Csa6G454390.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G454390.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 21779249 .. 21779838 (+)
Sequence length405
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAGTTGACGATGTTAAGATCAATCAAAAGCGTAAAATGGGGGAAGTGGATGAAAAAACAGAGTCCCAAATCTCAGAAAAAGCCCTAACTATAATTCCATGGTGAGAAGGAGAATTCAATTGCAAGAAACACCGAAGAAGCCCTCTCAAATCTTCCTTCGAGTATATCTCGTTCTCCAGAATCATTTGAACCATCGAGTGTCGGAAATCCAGGTACGGATCGTCCGAATCCTTCTCAACAGCAACACTCTCCCCCCCGCTCCGACCGAAGCCTCGGAACGTGATCGAGGTTCTGGTCTCGGAGTCGGAGTCGGAGAAGGGAGGGGATTCGGAGTCGGAGGAAGCGGAGGAGAAGCGATGATGATGATGGTTGGGGGATTTGGGGGAGGGCTTTGGTTTGAGGTGGTGGAAGAAGTGAGAGAGGAGCTTAGGTCTGCAAATGTTGAGATCGACGGAGAGGGAAGTGAGTTGGAGATTTCGCCGGGGAGCCGCCATTGTTGTTGAAGTTGGAGAGAGGGTGTGTTGTGTGGCTTTGGGTTTGAAGAGAGAGAGTTGGAATTTGGGGAATGAGTTTTAGAAAACCGTTTGCG

mRNA sequence

ATGGTGAGAAGGAGAATTCAATTGCAAGAAACACCGAAGAAGCCCTCTCAAATCTTCCTTCGAGTATATCTCGTTCTCCAGAATCATTTGAACCATCGAGTGTCGGAAATCCAGGTACGGATCGTCCGAATCCTTCTCAACAGCAACACTCTCCCCCCCGCTCCGACCGAAGCCTCGGAACGTGATCGAGGTTCTGGTCTCGGAGTCGGAGTCGGAGAAGGGAGGGGATTCGGAGTCGGAGGAAGCGGAGGAGAAGCGATGATGATGATGGTTGGGGGATTTGGGGGAGGGCTTTGGTTTGAGGTGGTGGAAGAAGTGAGAGAGGAGCTTAGGTCTGCAAATGTTGAGATCGACGGAGAGGGAAGTGAGTTGGAGATTTCGCCGGGGAGCCGCCATTGTTGTTGA

Coding sequence (CDS)

ATGGTGAGAAGGAGAATTCAATTGCAAGAAACACCGAAGAAGCCCTCTCAAATCTTCCTTCGAGTATATCTCGTTCTCCAGAATCATTTGAACCATCGAGTGTCGGAAATCCAGGTACGGATCGTCCGAATCCTTCTCAACAGCAACACTCTCCCCCCCGCTCCGACCGAAGCCTCGGAACGTGATCGAGGTTCTGGTCTCGGAGTCGGAGTCGGAGAAGGGAGGGGATTCGGAGTCGGAGGAAGCGGAGGAGAAGCGATGATGATGATGGTTGGGGGATTTGGGGGAGGGCTTTGGTTTGAGGTGGTGGAAGAAGTGAGAGAGGAGCTTAGGTCTGCAAATGTTGAGATCGACGGAGAGGGAAGTGAGTTGGAGATTTCGCCGGGGAGCCGCCATTGTTGTTGA

Protein sequence

MVRRRIQLQETPKKPSQIFLRVYLVLQNHLNHRVSEIQVRIVRILLNSNTLPPAPTEASERDRGSGLGVGVGEGRGFGVGGSGGEAMMMMVGGFGGGLWFEVVEEVREELRSANVEIDGEGSELEISPGSRHCC*
Homology
[Close]
BLAST of Csa6G454390.1 vs. TrEMBL
Match: A0A0A0KIS5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454390 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 9.1e-70
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MVRRRIQLQETPKKPSQIFLRVYLVLQNHLNHRVSEIQVRIVRILLNSNTLPPAPTEASE 60
           MVRRRIQLQETPKKPSQIFLRVYLVLQNHLNHRVSEIQVRIVRILLNSNTLPPAPTEASE
Sbjct: 1   MVRRRIQLQETPKKPSQIFLRVYLVLQNHLNHRVSEIQVRIVRILLNSNTLPPAPTEASE 60

Query: 61  RDRGSGLGVGVGEGRGFGVGGSGGEAMMMMVGGFGGGLWFEVVEEVREELRSANVEIDGE 120
           RDRGSGLGVGVGEGRGFGVGGSGGEAMMMMVGGFGGGLWFEVVEEVREELRSANVEIDGE
Sbjct: 61  RDRGSGLGVGVGEGRGFGVGGSGGEAMMMMVGGFGGGLWFEVVEEVREELRSANVEIDGE 120

Query: 121 GSELEISPGSRHCC 135
           GSELEISPGSRHCC
Sbjct: 121 GSELEISPGSRHCC 134

[Close]
BLAST of Csa6G454390.1 vs. NCBI nr
Match: gi|700193088|gb|KGN48292.1| (hypothetical protein Csa_6G454390 [Cucumis sativus])

HSP 1 Score: 270.8 bits (691), Expect = 1.3e-69
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MVRRRIQLQETPKKPSQIFLRVYLVLQNHLNHRVSEIQVRIVRILLNSNTLPPAPTEASE 60
           MVRRRIQLQETPKKPSQIFLRVYLVLQNHLNHRVSEIQVRIVRILLNSNTLPPAPTEASE
Sbjct: 1   MVRRRIQLQETPKKPSQIFLRVYLVLQNHLNHRVSEIQVRIVRILLNSNTLPPAPTEASE 60

Query: 61  RDRGSGLGVGVGEGRGFGVGGSGGEAMMMMVGGFGGGLWFEVVEEVREELRSANVEIDGE 120
           RDRGSGLGVGVGEGRGFGVGGSGGEAMMMMVGGFGGGLWFEVVEEVREELRSANVEIDGE
Sbjct: 61  RDRGSGLGVGVGEGRGFGVGGSGGEAMMMMVGGFGGGLWFEVVEEVREELRSANVEIDGE 120

Query: 121 GSELEISPGSRHCC 135
           GSELEISPGSRHCC
Sbjct: 121 GSELEISPGSRHCC 134

The following BLAST results are available for this feature:
BLAST of Csa6G454390.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIS5_CUCSA9.1e-70100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454390 PE=4 SV=1[more]
BLAST of Csa6G454390.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193088|gb|KGN48292.1|1.3e-69100.00hypothetical protein Csa_6G454390 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G454390Csa6G454390gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G454390.1Csa6G454390.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G454390.1.utr5p1Csa6G454390.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G454390.1.cds1Csa6G454390.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G454390.1.utr3p1Csa6G454390.1.utr3p1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 103..123
scor