Csa6G446330 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G446330
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 20880825 .. 20881282 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACGATACTCAAAACCCCAGGATGAAGTTCTTGGTACTTATCTTATCAATGATGATATTGAGCTACACTTGCTCAGCGACTTCAAGAAGGATTGCTTTGGGAGGACTTCATGGACAAGGAAACCAATATTTCTTCAAACAAGCACAAAAAGTTGAAGAAAATAACAGCAGAAAGAGCAATTTCAAGCACCCAGAAAGTGGCGTTAGCAACCATCATTCATTGCCTCGAGAGTACTTCAACAACTCACAAGGAAATGACAACGATAATGGCAATGGCGGAAGTGGGTAACTATTGCAAATTCAGAAGACCAATATATAATAGTTGATATATTGTACCAGAGAGGTCCGAGTAGTTCTTTATCTTCTATCTTTCAGTGTTCCTGTGTTCCAAGGAGTAGGCAACCAGGTTATGAGGGTAGAGGGAGGTGGGCTGTCCTACTGTAATCGATACCATCTGTC

mRNA sequence

ATGAAGTTCTTGGTACTTATCTTATCAATGATGATATTGAGCTACACTTGCTCAGCGACTTCAAGAAGGATTGCTTTGGGAGGACTTCATGGACAAGGAAACCAATATTTCTTCAAACAAGCACAAAAAGTTGAAGAAAATAACAGCAGAAAGAGCAATTTCAAGCACCCAGAAAGTGGCGTTAGCAACCATCATTCATTGCCTCGAGAGTACTTCAACAACTCACAAGGAAATGACAACGATAATGGCAATGGCGGAAGTGGGTAA

Coding sequence (CDS)

ATGAAGTTCTTGGTACTTATCTTATCAATGATGATATTGAGCTACACTTGCTCAGCGACTTCAAGAAGGATTGCTTTGGGAGGACTTCATGGACAAGGAAACCAATATTTCTTCAAACAAGCACAAAAAGTTGAAGAAAATAACAGCAGAAAGAGCAATTTCAAGCACCCAGAAAGTGGCGTTAGCAACCATCATTCATTGCCTCGAGAGTACTTCAACAACTCACAAGGAAATGACAACGATAATGGCAATGGCGGAAGTGGGTAA

Protein sequence

MKFLVLILSMMILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESGVSNHHSLPREYFNNSQGNDNDNGNGGSG*

Homology

[Close]

BLAST of Csa6G446330 vs. TrEMBL
Match: A0A0A0KK82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446330 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 5.6e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 1  MKFLVLILSMMILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESG 60
          MKFLVLILSMMILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESG
Sbjct: 1  MKFLVLILSMMILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESG 60

Query: 61 VSNHHSLPREYFNNSQGNDNDNGNGGSG 89
          VSNHHSLPREYFNNSQGNDNDNGNGGSG
Sbjct: 61 VSNHHSLPREYFNNSQGNDNDNGNGGSG 88

[Close]

BLAST of Csa6G446330 vs. TAIR10
Match: AT3G45160.1 (AT3G45160.1 Putative membrane lipoprotein)

HSP 1 Score: 47.8 bits (112), Expect = 4.2e-06
Identity = 27/86 (31.40%), Postives = 46/86 (53.49%), Query Frame = 1


Query: 4  LVLILSMMILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESGVSN 63
          +V+I+ MM++  +C A +R I     + +  +   +     EE+++ K   +HP S V N
Sbjct: 9  VVVIMVMMVIISSCLA-ARNIIPRETNQESEKVSREMIIGKEEDSTEK--IEHPRSSVEN 68

Query: 64 HHSLPR-EYFNNSQGNDNDNGNGGSG 89
          HH +PR +++N   G +N+ G GG G
Sbjct: 69 HHYIPRQDFYNYGPGGENNGGGGGGG 91

[Close]

BLAST of Csa6G446330 vs. NCBI nr
Match: gi|700192967|gb|KGN48171.1| (hypothetical protein Csa_6G446330 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 8.1e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 1  MKFLVLILSMMILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESG 60
          MKFLVLILSMMILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESG
Sbjct: 1  MKFLVLILSMMILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESG 60

Query: 61 VSNHHSLPREYFNNSQGNDNDNGNGGSG 89
          VSNHHSLPREYFNNSQGNDNDNGNGGSG
Sbjct: 61 VSNHHSLPREYFNNSQGNDNDNGNGGSG 88

[Close]

BLAST of Csa6G446330 vs. NCBI nr
Match: gi|659096686|ref|XP_008449232.1| (PREDICTED: uncharacterized protein LOC103491167 [Cucumis melo])

HSP 1 Score: 181.8 bits (460), Expect = 5.3e-43
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 1  MKFLVLILSMMILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESG 60
          MKFLVLILS MILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESG
Sbjct: 1  MKFLVLILSTMILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESG 60

Query: 61 VSNHHSLPREYFNNSQGNDNDNGNGGSG 89
          +SNHHSLPREYFNNSQGNDNDNGNGGSG
Sbjct: 61 ISNHHSLPREYFNNSQGNDNDNGNGGSG 88

The following BLAST results are available for this feature:

BLAST of Csa6G446330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK82_CUCSA	5.6e-44	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446330 PE=4 SV=1	[more]

BLAST of Csa6G446330 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G45160.1	4.2e-06	31.40	Putative membrane lipoprotein	[more]

BLAST of Csa6G446330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192967\|gb\|KGN48171.1\|	8.1e-44	100.00	hypothetical protein Csa_6G446330 [Cucumis sativus]	[more]
gi\|659096686\|ref\|XP_008449232.1\|	5.3e-43	97.73	PREDICTED: uncharacterized protein LOC103491167 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU164220	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G446330.1	Csa6G446330.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU164220	CU164220	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G446330	Cla018307	Watermelon (97103) v1	cuwmB505
Csa6G446330	MELO3C014218	Melon (DHL92) v3.5.1	cumeB490
Csa6G446330	ClCG04G009180	Watermelon (Charleston Gray)	cuwcgB464
Csa6G446330	Lsi01G013210	Bottle gourd (USVL1VR-Ls)	culsiB435
Csa6G446330	MELO3C014218.2	Melon (DHL92) v3.6.1	cumedB488
Csa6G446330	Cla97C04G075900	Watermelon (97103) v2	cuwmbB455
Csa6G446330	CSPI06G24560	Wild cucumber (PI 183967)	cpicuB313
Csa6G446330	CmaCh03G012260	Cucurbita maxima (Rimu)	cmacuB681
Csa6G446330	CmoCh03G012240	Cucurbita moschata (Rifu)	cmocuB670
Csa6G446330	Cp4.1LG10g04610	Cucurbita pepo (Zucchini)	cpecuB085

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G446330	Cucurbita moschata (Rifu)	cmocuB253
Csa6G446330	Cucurbita moschata (Rifu)	cmocuB828
Csa6G446330	Cucurbita moschata (Rifu)	cmocuB865
Csa6G446330	Melon (DHL92) v3.5.1	cumeB484
Csa6G446330	Watermelon (Charleston Gray)	cuwcgB424
Csa6G446330	Watermelon (Charleston Gray)	cuwcgB444
Csa6G446330	Watermelon (97103) v1	cuwmB452
Csa6G446330	Watermelon (97103) v1	cuwmB518
Csa6G446330	Cucurbita pepo (Zucchini)	cpecuB296
Csa6G446330	Cucurbita pepo (Zucchini)	cpecuB503
Csa6G446330	Cucurbita pepo (Zucchini)	cpecuB624
Csa6G446330	Cucurbita pepo (Zucchini)	cpecuB876
Csa6G446330	Bottle gourd (USVL1VR-Ls)	culsiB445
Csa6G446330	Cucumber (Gy14) v2	cgybcuB137
Csa6G446330	Cucumber (Gy14) v2	cgybcuB281
Csa6G446330	Cucumber (Gy14) v2	cgybcuB284
Csa6G446330	Melon (DHL92) v3.6.1	cumedB411
Csa6G446330	Melon (DHL92) v3.6.1	cumedB464
Csa6G446330	Silver-seed gourd	carcuB0181
Csa6G446330	Silver-seed gourd	carcuB0267
Csa6G446330	Silver-seed gourd	carcuB0278
Csa6G446330	Watermelon (97103) v2	cuwmbB418
Csa6G446330	Watermelon (97103) v2	cuwmbB434
Csa6G446330	Wax gourd	cuwgoB529
Csa6G446330	Wax gourd	cuwgoB629
Csa6G446330	Cucumber (Chinese Long) v2	cucuB109
Csa6G446330	Cucumber (Chinese Long) v2	cucuB168
Csa6G446330	Cucumber (Gy14) v1	cgycuB167
Csa6G446330	Cucumber (Gy14) v1	cgycuB439
Csa6G446330	Cucumber (Gy14) v1	cgycuB542
Csa6G446330	Cucurbita maxima (Rimu)	cmacuB267
Csa6G446330	Cucurbita maxima (Rimu)	cmacuB561
Csa6G446330	Cucurbita maxima (Rimu)	cmacuB840
Csa6G446330	Cucurbita maxima (Rimu)	cmacuB878