Csa6G319740 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G319740
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 15057184 .. 15057483 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTAAATTACTATTTTAATCGAAATCGAGAAAGTTGGGGAACAATCGTGTTGTTGGTGCTGCAATATGGGTACTCTAGAACTAGGCTTGCTTTATTATCCTTAGCATGCCGGATCATGTCCGCCATGGAAGCTACACAAACGAACTTCGTGACCTTTATCTTCTTGCAGTGTCCCATATCTGGTGGATGTTTCCCGGCATCTCGTCAAGGGAGTCTAATTCTTCGTCAATGGGAGTTGAAAAGCGAACAGCATTATAGTTTGCGATCGAGGAACATCCACTGTGAGATGAGATGA

mRNA sequence

ATGGAGTTAAATTACTATTTTAATCGAAATCGAGAAAGTTGGGGAACAATCGTGTTGTTGGTGCTGCAATATGGGTACTCTAGAACTAGGCTTGCTTTATTATCCTTAGCATGCCGGATCATGTCCGCCATGGAAGCTACACAAACGAACTTCGTGACCTTTATCTTCTTGCAGTGTCCCATATCTGGTGGATGTTTCCCGGCATCTCGTCAAGGGAGTCTAATTCTTCGTCAATGGGAGTTGAAAAGCGAACAGCATTATAGTTTGCGATCGAGGAACATCCACTGTGAGATGAGATGA

Coding sequence (CDS)

ATGGAGTTAAATTACTATTTTAATCGAAATCGAGAAAGTTGGGGAACAATCGTGTTGTTGGTGCTGCAATATGGGTACTCTAGAACTAGGCTTGCTTTATTATCCTTAGCATGCCGGATCATGTCCGCCATGGAAGCTACACAAACGAACTTCGTGACCTTTATCTTCTTGCAGTGTCCCATATCTGGTGGATGTTTCCCGGCATCTCGTCAAGGGAGTCTAATTCTTCGTCAATGGGAGTTGAAAAGCGAACAGCATTATAGTTTGCGATCGAGGAACATCCACTGTGAGATGAGATGA

Protein sequence

MELNYYFNRNRESWGTIVLLVLQYGYSRTRLALLSLACRIMSAMEATQTNFVTFIFLQCPISGGCFPASRQGSLILRQWELKSEQHYSLRSRNIHCEMR*

Homology

[Close]

BLAST of Csa6G319740 vs. TrEMBL
Match: A0A0A0KD32_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G319740 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 3.5e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 1   MELNYYFNRNRESWGTIVLLVLQYGYSRTRLALLSLACRIMSAMEATQTNFVTFIFLQCP 60
           MELNYYFNRNRESWGTIVLLVLQYGYSRTRLALLSLACRIMSAMEATQTNFVTFIFLQCP
Sbjct: 1   MELNYYFNRNRESWGTIVLLVLQYGYSRTRLALLSLACRIMSAMEATQTNFVTFIFLQCP 60

Query: 61  ISGGCFPASRQGSLILRQWELKSEQHYSLRSRNIHCEMR 100
           ISGGCFPASRQGSLILRQWELKSEQHYSLRSRNIHCEMR
Sbjct: 61  ISGGCFPASRQGSLILRQWELKSEQHYSLRSRNIHCEMR 99

[Close]

BLAST of Csa6G319740 vs. NCBI nr
Match: gi|700192224|gb|KGN47428.1| (hypothetical protein Csa_6G319740 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 5.0e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 1   MELNYYFNRNRESWGTIVLLVLQYGYSRTRLALLSLACRIMSAMEATQTNFVTFIFLQCP 60
           MELNYYFNRNRESWGTIVLLVLQYGYSRTRLALLSLACRIMSAMEATQTNFVTFIFLQCP
Sbjct: 1   MELNYYFNRNRESWGTIVLLVLQYGYSRTRLALLSLACRIMSAMEATQTNFVTFIFLQCP 60

Query: 61  ISGGCFPASRQGSLILRQWELKSEQHYSLRSRNIHCEMR 100
           ISGGCFPASRQGSLILRQWELKSEQHYSLRSRNIHCEMR
Sbjct: 61  ISGGCFPASRQGSLILRQWELKSEQHYSLRSRNIHCEMR 99

The following BLAST results are available for this feature:

BLAST of Csa6G319740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD32_CUCSA	3.5e-50	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G319740 PE=4 SV=1	[more]

BLAST of Csa6G319740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192224\|gb\|KGN47428.1\|	5.0e-50	100.00	hypothetical protein Csa_6G319740 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G319740.1	Csa6G319740.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G319740	Lsi09G014440	Bottle gourd (USVL1VR-Ls)	culsiB403
Csa6G319740	MELO3C035188.2	Melon (DHL92) v3.6.1	cumedB426
Csa6G319740	CSPI06G17520	Wild cucumber (PI 183967)	cpicuB313
Csa6G319740	CmoCh17G003260	Cucurbita moschata (Rifu)	cmocuB368
Csa6G319740	Cp4.1LG12g02910	Cucurbita pepo (Zucchini)	cpecuB151
Csa6G319740	CsGy6G016950	Cucumber (Gy14) v2	cgybcuB281

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G319740	Watermelon (Charleston Gray)	cuwcgB428
Csa6G319740	Watermelon (Charleston Gray)	cuwcgB474
Csa6G319740	Watermelon (Charleston Gray)	cuwcgB477
Csa6G319740	Watermelon (97103) v1	cuwmB497
Csa6G319740	Watermelon (97103) v1	cuwmB538
Csa6G319740	Cucurbita pepo (Zucchini)	cpecuB324
Csa6G319740	Cucurbita pepo (Zucchini)	cpecuB625
Csa6G319740	Cucurbita pepo (Zucchini)	cpecuB875
Csa6G319740	Bottle gourd (USVL1VR-Ls)	culsiB463
Csa6G319740	Cucumber (Gy14) v2	cgybcuB146
Csa6G319740	Melon (DHL92) v3.6.1	cumedB477
Csa6G319740	Silver-seed gourd	carcuB0079
Csa6G319740	Silver-seed gourd	carcuB0307
Csa6G319740	Silver-seed gourd	carcuB0724
Csa6G319740	Watermelon (97103) v2	cuwmbB465
Csa6G319740	Watermelon (97103) v2	cuwmbB469
Csa6G319740	Wax gourd	cuwgoB538
Csa6G319740	Wax gourd	cuwgoB558
Csa6G319740	Cucumber (Chinese Long) v2	cucuB120
Csa6G319740	Cucumber (Gy14) v1	cgycuB064
Csa6G319740	Cucumber (Gy14) v1	cgycuB371
Csa6G319740	Cucurbita maxima (Rimu)	cmacuB378
Csa6G319740	Cucurbita maxima (Rimu)	cmacuB845
Csa6G319740	Cucurbita maxima (Rimu)	cmacuB904
Csa6G319740	Cucurbita moschata (Rifu)	cmocuB254
Csa6G319740	Cucurbita moschata (Rifu)	cmocuB891
Csa6G319740	Melon (DHL92) v3.5.1	cumeB445
Csa6G319740	Melon (DHL92) v3.5.1	cumeB497