Cp4.1LG12g02910 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g02910
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 1912941 .. 1913267 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTCAGATTTGCTGTTGCCAATGGAGTTGATGAATATGTTAATCGAAATCGAGAAAGTTGGGGAACAATCGTGTTGCTGGTGCTGCAATATCGGTACTCTACGACTAGTCCTGCTTTATTATCCTCATCAGTACTGCCGGATCATGTCCGCCATGGAAAATACACTGACGAACTTCATGACCTATATCCTCTTGCAGTGTCCATATCTGGTGGATGTTTCCTGGCATCTCGTCGTCAAGGAGCCAATTCTTCGACAATCGGAGTTGATAAGCGAACAGCATATAGTTTGCGATTAAGAAACAGCAACTGTGAGATGAGATGA

mRNA sequence

ATGGAATTCAGATTTGCTGTTGCCAATGGAGTTGATGAATATGTTAATCGAAATCGAGAAAGTTGGGGAACAATCGTGTTGCTGGTGCTGCAATATCGGTACTCTACGACTAGTCCTGCTTTATTATCCTCATCAGTACTGCCGGATCATGTCCGCCATGGAAAATACACTGACGAACTTCATGACCTATATCCTCTTGCAGTGTCCATATCTGGTGGATGTTTCCTGGCATCTCGTCGTCAAGGAGCCAATTCTTCGACAATCGGAGTTGATAAGCGAACAGCATATAGTTTGCGATTAAGAAACAGCAACTGTGAGATGAGATGA

Coding sequence (CDS)

ATGGAATTCAGATTTGCTGTTGCCAATGGAGTTGATGAATATGTTAATCGAAATCGAGAAAGTTGGGGAACAATCGTGTTGCTGGTGCTGCAATATCGGTACTCTACGACTAGTCCTGCTTTATTATCCTCATCAGTACTGCCGGATCATGTCCGCCATGGAAAATACACTGACGAACTTCATGACCTATATCCTCTTGCAGTGTCCATATCTGGTGGATGTTTCCTGGCATCTCGTCGTCAAGGAGCCAATTCTTCGACAATCGGAGTTGATAAGCGAACAGCATATAGTTTGCGATTAAGAAACAGCAACTGTGAGATGAGATGA

Protein sequence

MEFRFAVANGVDEYVNRNRESWGTIVLLVLQYRYSTTSPALLSSSVLPDHVRHGKYTDELHDLYPLAVSISGGCFLASRRQGANSSTIGVDKRTAYSLRLRNSNCEMR
Homology
[Close]
BLAST of Cp4.1LG12g02910 vs. TrEMBL
Match: A0A0A0KD32_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G319740 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-10
Identity = 46/95 (48.42%), Postives = 54/95 (56.84%), Query Frame = 1 

Query: 14  YVNRNRESWGTIVLLVLQYRYSTTSPALLSSSVLPDHVRHGKYTDELHDLYPLAVSISGG 73
           Y NRNRESWGTIVLLVLQY YS T  ALLS +           T+ +  ++ L   ISGG
Sbjct: 6   YFNRNRESWGTIVLLVLQYGYSRTRLALLSLACRIMSAMEATQTNFVTFIF-LQCPISGG 65

Query: 74  CFLASRRQGANSSTIGVDKRTAYSLRLRNSNCEMR 109
           CF ASR+         +     YSLR RN +CEMR
Sbjct: 66  CFPASRQGSLILRQWELKSEQHYSLRSRNIHCEMR 99

[Close]
BLAST of Cp4.1LG12g02910 vs. NCBI nr
Match: gi|700192224|gb|KGN47428.1| (hypothetical protein Csa_6G319740 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-10
Identity = 46/95 (48.42%), Postives = 54/95 (56.84%), Query Frame = 1 

Query: 14  YVNRNRESWGTIVLLVLQYRYSTTSPALLSSSVLPDHVRHGKYTDELHDLYPLAVSISGG 73
           Y NRNRESWGTIVLLVLQY YS T  ALLS +           T+ +  ++ L   ISGG
Sbjct: 6   YFNRNRESWGTIVLLVLQYGYSRTRLALLSLACRIMSAMEATQTNFVTFIF-LQCPISGG 65

Query: 74  CFLASRRQGANSSTIGVDKRTAYSLRLRNSNCEMR 109
           CF ASR+         +     YSLR RN +CEMR
Sbjct: 66  CFPASRQGSLILRQWELKSEQHYSLRSRNIHCEMR 99

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g02910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g02910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KD32_CUCSA1.7e-1048.42Uncharacterized protein OS=Cucumis sativus GN=Csa_6G319740 PE=4 SV=1[more]
BLAST of Cp4.1LG12g02910 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g02910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192224|gb|KGN47428.1|2.4e-1048.42hypothetical protein Csa_6G319740 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g02910.1Cp4.1LG12g02910.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g02910CmaCh17G003370Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g02910Csa6G319740Cucumber (Chinese Long) v2cpecuB151
Cp4.1LG12g02910CSPI06G17520Wild cucumber (PI 183967)cpecpiB153
Cp4.1LG12g02910Lsi09G014440Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g02910CsaV3_6G023880Cucumber (Chinese Long) v3cpecucB0175
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g02910Cucumber (Chinese Long) v3cpecucB0149
Cp4.1LG12g02910Cucumber (Chinese Long) v3cpecucB0154
Cp4.1LG12g02910Wax gourdcpewgoB0181
Cp4.1LG12g02910Wax gourdcpewgoB0188
Cp4.1LG12g02910Cucurbita pepo (Zucchini)cpecpeB109
Cp4.1LG12g02910Cucurbita pepo (Zucchini)cpecpeB158
Cp4.1LG12g02910Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g02910Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG12g02910Cucumber (Gy14) v1cgycpeB0107
Cp4.1LG12g02910Cucumber (Gy14) v1cgycpeB0671
Cp4.1LG12g02910Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g02910Cucurbita moschata (Rifu)cmocpeB225
Cp4.1LG12g02910Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g02910Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g02910Wild cucumber (PI 183967)cpecpiB133
Cp4.1LG12g02910Cucumber (Chinese Long) v2cpecuB132
Cp4.1LG12g02910Bottle gourd (USVL1VR-Ls)cpelsiB118
Cp4.1LG12g02910Watermelon (Charleston Gray)cpewcgB139
Cp4.1LG12g02910Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g02910Watermelon (97103) v1cpewmB152
Cp4.1LG12g02910Watermelon (97103) v1cpewmB161
Cp4.1LG12g02910Melon (DHL92) v3.5.1cpemeB112
Cp4.1LG12g02910Melon (DHL92) v3.5.1cpemeB140
Cp4.1LG12g02910Cucumber (Gy14) v2cgybcpeB179
Cp4.1LG12g02910Cucumber (Gy14) v2cgybcpeB303
Cp4.1LG12g02910Cucumber (Gy14) v2cgybcpeB731
Cp4.1LG12g02910Melon (DHL92) v3.6.1cpemedB138
Cp4.1LG12g02910Melon (DHL92) v3.6.1cpemedB169
Cp4.1LG12g02910Melon (DHL92) v3.6.1cpemedB170
Cp4.1LG12g02910Silver-seed gourdcarcpeB0099
Cp4.1LG12g02910Silver-seed gourdcarcpeB0393
Cp4.1LG12g02910Silver-seed gourdcarcpeB0984