Csa6G088050 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G088050
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 5996187 .. 5996596 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGGAAAACACAAGGCGGAATTGAGGAATTTGAGAGTGAAAAAAGGGAAAGAGAGGGGAAATGGGAGAGGAAGTGTGAGAGTTGGTCCCTTCGTTTGATTTTTGATAAAGAGAACGAGGCCTGGGCGAGGGCAATTGGGCGAAAAGGGTCGGGTTCAGATTGCCGTCTTCTACCTTCTACAGTGCCTTATTGGGCTGGACCTCTCACCCTAAATCGGCCCAAGCTCATAAATGATTTTTCTATGTTTTTAAATACATACATACATATATATCTATATATATTATTGTATATATGTGTGTATGTATGCAGCTATAATTTTGAAAATTCATCAACAAATTTGATCCATCTATTAGCAGCTACAAATTTGAAAATTCAAATATATACTTTACAATTTTAAGGTATTGA

mRNA sequence

ATGAAAAGGAAAACACAAGGCGGAATTGAGGAATTTGAGAGTGAAAAAAGGGAAAGAGAGGGGAAATGGGAGAGGAAGTGTGAGAGTTGGTCCCTTCGTTTGATTTTTGATAAAGAGAACGAGGCCTGGGCGAGGGCAATTGGGCGAAAAGGGTCGGGTTCAGATTGCCGTCTTCTACCTTCTACAGTGCCTTATTGGGCTGGACCTCTCACCCTAAATCGGCCCAAGCTCATAAATGATTTTTCTATGTATTGA

Coding sequence (CDS)

ATGAAAAGGAAAACACAAGGCGGAATTGAGGAATTTGAGAGTGAAAAAAGGGAAAGAGAGGGGAAATGGGAGAGGAAGTGTGAGAGTTGGTCCCTTCGTTTGATTTTTGATAAAGAGAACGAGGCCTGGGCGAGGGCAATTGGGCGAAAAGGGTCGGGTTCAGATTGCCGTCTTCTACCTTCTACAGTGCCTTATTGGGCTGGACCTCTCACCCTAAATCGGCCCAAGCTCATAAATGATTTTTCTATGTATTGA

Protein sequence

MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLPSTVPYWAGPLTLNRPKLINDFSMY*
Homology
[Close]
BLAST of Csa6G088050 vs. TrEMBL
Match: A0A0A0KDB5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088050 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 7.8e-43
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP 60
          MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP
Sbjct: 1  MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP 60

Query: 61 STVPYWAGPLTLNRPKLINDFSMY 85
          STVPYWAGPLTLNRPKLINDFSMY
Sbjct: 61 STVPYWAGPLTLNRPKLINDFSMY 84

[Close]
BLAST of Csa6G088050 vs. NCBI nr
Match: gi|700191173|gb|KGN46377.1| (hypothetical protein Csa_6G088050 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP 60
          MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP
Sbjct: 1  MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP 60

Query: 61 STVPYWAGPLTLNRPKLINDFSMY 85
          STVPYWAGPLTLNRPKLINDFSMY
Sbjct: 61 STVPYWAGPLTLNRPKLINDFSMY 84

The following BLAST results are available for this feature:
BLAST of Csa6G088050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDB5_CUCSA7.8e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088050 PE=4 SV=1[more]
BLAST of Csa6G088050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191173|gb|KGN46377.1|1.1e-42100.00hypothetical protein Csa_6G088050 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU154354cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G088050.1Csa6G088050.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU154354CU154354transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G088050CsGy6G007050Cucumber (Gy14) v2cgybcuB282
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G088050Melon (DHL92) v3.6.1cumedB422
Csa6G088050Silver-seed gourdcarcuB0012
Csa6G088050Silver-seed gourdcarcuB0995
Csa6G088050Watermelon (97103) v2cuwmbB468
Csa6G088050Wax gourdcuwgoB533
Csa6G088050Cucumber (Chinese Long) v2cucuB118
Csa6G088050Cucumber (Gy14) v1cgycuB490
Csa6G088050Cucurbita maxima (Rimu)cmacuB367
Csa6G088050Cucurbita maxima (Rimu)cmacuB903
Csa6G088050Cucurbita moschata (Rifu)cmocuB358
Csa6G088050Cucurbita moschata (Rifu)cmocuB889
Csa6G088050Melon (DHL92) v3.5.1cumeB442
Csa6G088050Watermelon (Charleston Gray)cuwcgB476
Csa6G088050Watermelon (97103) v1cuwmB537
Csa6G088050Cucurbita pepo (Zucchini)cpecuB142
Csa6G088050Cucurbita pepo (Zucchini)cpecuB322
Csa6G088050Bottle gourd (USVL1VR-Ls)culsiB402