CsGy6G007050 (gene) Cucumber (Gy14) v2

Overview
NameCsGy6G007050
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr6 : 6057798 .. 6059490 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGGAAAACACAAGGCGGAATTGAGGAATTTGAGAGTGAAAAAAGGGAAAGAGAGGGGAAATGGGAGAGGAAGTGTGAGAGTTGGTCCCTTCGTTTGATTTTTGATAAAGAGAACGAGGCCTGGGCGAGGGCAATTGGGCGAAAAGGGTCGGGTTCAGATTGCCGTCTTCTACCTTCTACAGTGCCTTATTGGGCTGGACCTCTCACCCTAAATCGGCCCAAGCTCATAAATGATTTTTCTATGTTTTTAAATACATACATACATATATATCTATATATATTATTGTATATATGTGTGTATGTATGCAGCTATAATTTTGAAAATTCATCAACAAATTTGATCCATCTATTAGCAGCTACAAATTTGAAAATTCAAATATATACTTTACAATTTTAAGGTATTGATGAACTATTAGACACAACATTGAAAGTTCAATGATCTATTAGATGTTTTTAAAAGTTGAAATGTTAGGTGTCTTTAAAGGTTAAGATATTAGGTGTTTTTCAAGGTTAAGAAATCACGTGAAAATTCTTTGATGTCGATACATTTAGAGACGGTTTAGATTGAGATAATTATGATGAAAATAAGAGTGAAAATGTGTATGTAAACATGCACTTGTTTAGAACAGTATTTAGTAGTTTAAACATGAGAATAACCTATTATCGTGCATTACTTATGCTCGTTAATCATACTCGTCCAAAATAATGAATTTTCTTTTTTGTCCACACTCTTTTCTCTTTTCCCGAATCGCACAAAAGAGATAAAAAAAACTAGAGATATTCTAATGTAATAAATTGGTGTATTCTTTTTTTTATTATTATTTCATGCTTGTATTTGTTAATTAAAAGTTAATTAGACAAAAAATAAATTTTTAGTTTATAAAATCACATTAAAATTAAAATGATAGTGCATGCATTTGACTACTTTCATTTAATGAATCAATACATGCTTTACTTTTATTTTAATTTGATAGAATAGTTTATACTCGTGCTTGTTTTTAAATAGATGGCAAATAAAAACTATTAATTATGTTTGGAGTTAGTTAATGATTGTTATGATTTATATAATGTGAATTTATTTATCAATTGTTTTATTATCAACTTAATATTAATTAATTACGGTTTATTAATTATTTGATTGATTAACAGCAAAATATTCATTTTACCAATATGGATAATTAATAATTTAATCGATATTGTTTGAAATATTTTTAAAAATAACAAACTTAATTAAAATATTTATCAACTATATTAAAATCATGAATTATATAGATGATAGTCACTAATACACTTTTATCGGTATTTGTCACTCGTAAAAGCATATTAATGACTACCAACGTTTATTATCGATCGAATTTGAAAATGTTGTTATATATTGTAAATCTTTTGTCAATTTTGTTATTTTTTATAATTAGTTTATTGTTAAACAATTATTTTATCAATAATTTGAATTACATTTATTGTACAACAATTAATATATTATAATTTTATATAGTTTTTATTACATGGTTTTACCAACGAAATTTATATAAAGCCATCATTTTAATTATCAACAATCGTACTTATTATTTCCATCCCAACTCTCTCGATTCAAACGACCCTTTGTGGTTGAGTGTATTTAATCTTTTATTATGTTATACTTTTAGGTCGTACAATATACATTTTATTTTGAGAGACTTCAAATTTAG

mRNA sequence

ATGAAAAGGAAAACACAAGGCGGAATTGAGGAATTTGAGAGTGAAAAAAGGGAAAGAGAGGGGAAATGGGAGAGGAAGTGTGAGAGTTGGTCCCTTCGTTTGATTTTTGATAAAGAGAACGAGGCCTGGGCGAGGGCAATTGGGCGAAAAGGGTCGGGTTCAGATTGCCGTCTTCTACCTTCTACAGTCGTACAATATACATTTTATTTTGAGAGACTTCAAATTTAG

Coding sequence (CDS)

ATGAAAAGGAAAACACAAGGCGGAATTGAGGAATTTGAGAGTGAAAAAAGGGAAAGAGAGGGGAAATGGGAGAGGAAGTGTGAGAGTTGGTCCCTTCGTTTGATTTTTGATAAAGAGAACGAGGCCTGGGCGAGGGCAATTGGGCGAAAAGGGTCGGGTTCAGATTGCCGTCTTCTACCTTCTACAGTCGTACAATATACATTTTATTTTGAGAGACTTCAAATTTAG

Protein sequence

MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLPSTVVQYTFYFERLQI
Homology
[Close]
BLAST of CsGy6G007050 vs. NCBI nr
Match: KGN46377.1 (hypothetical protein Csa_6G088050 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 1.0e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP 60
          MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP
Sbjct: 1  MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP 60

Query: 61 STV 64
          STV
Sbjct: 61 STV 63

[Close]
BLAST of CsGy6G007050 vs. TrEMBL
Match: tr|A0A0A0KDB5|A0A0A0KDB5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G088050 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.8e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP 60
          MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP
Sbjct: 1  MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP 60

Query: 61 STV 64
          STV
Sbjct: 61 STV 63

The following BLAST results are available for this feature:
BLAST of CsGy6G007050 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46377.11.0e-27100.00hypothetical protein Csa_6G088050 [Cucumis sativus][more]
BLAST of CsGy6G007050 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy6G007050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy6G007050 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KDB5|A0A0A0KDB5_CUCSA6.8e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G088050 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G007050.1CsGy6G007050.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy6G007050Csa6G088050Cucumber (Chinese Long) v2cgybcuB282
CsGy6G007050CsaV3_6G007410Cucumber (Chinese Long) v3cgybcucB298
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy6G007050Cucurbita maxima (Rimu)cgybcmaB751
CsGy6G007050Cucurbita maxima (Rimu)cgybcmaB871
CsGy6G007050Cucurbita moschata (Rifu)cgybcmoB734
CsGy6G007050Cucurbita moschata (Rifu)cgybcmoB853
CsGy6G007050Cucurbita pepo (Zucchini)cgybcpeB722
CsGy6G007050Cucurbita pepo (Zucchini)cgybcpeB783
CsGy6G007050Bottle gourd (USVL1VR-Ls)cgyblsiB366
CsGy6G007050Melon (DHL92) v3.5.1cgybmeB379
CsGy6G007050Melon (DHL92) v3.6.1cgybmedB381
CsGy6G007050Watermelon (Charleston Gray)cgybwcgB438
CsGy6G007050Watermelon (97103) v1cgybwmB501
CsGy6G007050Wild cucumber (PI 183967)cgybcpiB288
CsGy6G007050Silver-seed gourdcarcgybB0011
CsGy6G007050Silver-seed gourdcarcgybB0968
CsGy6G007050Watermelon (97103) v2cgybwmbB446
CsGy6G007050Wax gourdcgybwgoB509