CsaV3_6G007410 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G007410
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 6035467 .. 6035876 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGGAAAACACAAGGCGGAATTGAGGAATTTGAGAGTGAAAAAAGGGAAAGAGAGGGGAAATGGGAGAGGAAGTGTGAGAGTTGGTCCCTTCGTTTGATTTTTGATAAAGAGAACGAGGCCTGGGCGAGGGCAATTGGGCGAAAAGGGTCGGGTTCAGATTGCCGTCTTCTACCTTCTACAGTGCCTTATTGGGCTGGACCTCTCACCCTAAATCGGCCCAAGCTCATAAATGATTTTTCTATGTTTTTAAATACATACATACATATATATCTATATATATTATTGTATATATGTGTGTATGTATGCAGCTATAATTTTGAAAATTCATCAACAAATTTGATCCATCTATTAGCAGCTACAAATTTGAAAATTCAAATATATACTTTACAATTTTAAGGTATTGA

mRNA sequence

ATGAAAAGGAAAACACAAGGCGGAATTGAGGAATTTGAGAGTGAAAAAAGGGAAAGAGAGGGGAAATGGGAGAGGAAGTGTGAGAGTTGGTCCCTTCGTTTGATTTTTGATAAAGAGAACGAGGCCTGGGCGAGGGCAATTGGGCGAAAAGGGTCGGGTTCAGATTGCCGTCTTCTACCTTCTACAGTGCCTTATTGGGCTGGACCTCTCACCCTAAATCGGCCCAAGCTCATAAATGATTTTTCTATGTATTGA

Coding sequence (CDS)

ATGAAAAGGAAAACACAAGGCGGAATTGAGGAATTTGAGAGTGAAAAAAGGGAAAGAGAGGGGAAATGGGAGAGGAAGTGTGAGAGTTGGTCCCTTCGTTTGATTTTTGATAAAGAGAACGAGGCCTGGGCGAGGGCAATTGGGCGAAAAGGGTCGGGTTCAGATTGCCGTCTTCTACCTTCTACAGTGCCTTATTGGGCTGGACCTCTCACCCTAAATCGGCCCAAGCTCATAAATGATTTTTCTATGTATTGA

Protein sequence

MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLPSTVPYWAGPLTLNRPKLINDFSMY
Homology
[Close]
BLAST of CsaV3_6G007410 vs. NCBI nr
Match: KGN46377.1 (hypothetical protein Csa_6G088050 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 4.8e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP 60
          MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP
Sbjct: 1  MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP 60

Query: 61 STVPYWAGPLTLNRPKLINDFSMY 85
          STVPYWAGPLTLNRPKLINDFSMY
Sbjct: 61 STVPYWAGPLTLNRPKLINDFSMY 84

[Close]
BLAST of CsaV3_6G007410 vs. TrEMBL
Match: tr|A0A0A0KDB5|A0A0A0KDB5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G088050 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.2e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP 60
          MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP
Sbjct: 1  MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP 60

Query: 61 STVPYWAGPLTLNRPKLINDFSMY 85
          STVPYWAGPLTLNRPKLINDFSMY
Sbjct: 61 STVPYWAGPLTLNRPKLINDFSMY 84

The following BLAST results are available for this feature:
BLAST of CsaV3_6G007410 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46377.14.8e-42100.00hypothetical protein Csa_6G088050 [Cucumis sativus][more]
BLAST of CsaV3_6G007410 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G007410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G007410 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KDB5|A0A0A0KDB5_CUCSA3.2e-42100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G088050 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G007410.1CsaV3_6G007410.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G007410CsGy6G007050Cucumber (Gy14) v2cgybcucB298
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G007410Cucumber (Chinese Long) v3cuccucB145
CsaV3_6G007410Silver-seed gourdcarcucB0012
CsaV3_6G007410Silver-seed gourdcarcucB1024
CsaV3_6G007410Cucumber (Gy14) v1cgycucB532
CsaV3_6G007410Cucurbita maxima (Rimu)cmacucB0439
CsaV3_6G007410Cucurbita maxima (Rimu)cmacucB1072
CsaV3_6G007410Cucurbita moschata (Rifu)cmocucB0433
CsaV3_6G007410Cucurbita moschata (Rifu)cmocucB1054
CsaV3_6G007410Cucurbita pepo (Zucchini)cpecucB0166
CsaV3_6G007410Cucurbita pepo (Zucchini)cpecucB0403
CsaV3_6G007410Wild cucumber (PI 183967)cpicucB364
CsaV3_6G007410Bottle gourd (USVL1VR-Ls)cuclsiB424
CsaV3_6G007410Bottle gourd (USVL1VR-Ls)cuclsiB495
CsaV3_6G007410Melon (DHL92) v3.5.1cucmeB444
CsaV3_6G007410Melon (DHL92) v3.6.1cucmedB435
CsaV3_6G007410Watermelon (Charleston Gray)cucwcgB497
CsaV3_6G007410Watermelon (97103) v1cucwmB520
CsaV3_6G007410Watermelon (97103) v1cucwmB562
CsaV3_6G007410Watermelon (97103) v2cucwmbB487
CsaV3_6G007410Wax gourdcucwgoB549