Csa6G088050.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G088050.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 5996187 .. 5996596 (+)
Sequence length255
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGGAAAACACAAGGCGGAATTGAGGAATTTGAGAGTGAAAAAAGGGAAAGAGAGGGGAAATGGGAGAGGAAGTGTGAGAGTTGGTCCCTTCGTTTGATTTTTGATAAAGAGAACGAGGCCTGGGCGAGGGCAATTGGGCGAAAAGGGTCGGGTTCAGATTGCCGTCTTCTACCTTCTACAGTGCCTTATTGGGCTGGACCTCTCACCCTAAATCGGCCCAAGCTCATAAATGATTTTTCTATGTTTTTAAATACATACATACATATATATCTATATATATTATTGTATATATGTGTGTATGTATGCAGCTATAATTTTGAAAATTCATCAACAAATTTGATCCATCTATTAGCAGCTACAAATTTGAAAATTCAAATATATACTTTACAATTTTAAGGTATTGA

mRNA sequence

ATGAAAAGGAAAACACAAGGCGGAATTGAGGAATTTGAGAGTGAAAAAAGGGAAAGAGAGGGGAAATGGGAGAGGAAGTGTGAGAGTTGGTCCCTTCGTTTGATTTTTGATAAAGAGAACGAGGCCTGGGCGAGGGCAATTGGGCGAAAAGGGTCGGGTTCAGATTGCCGTCTTCTACCTTCTACAGTGCCTTATTGGGCTGGACCTCTCACCCTAAATCGGCCCAAGCTCATAAATGATTTTTCTATGTATTGA

Coding sequence (CDS)

ATGAAAAGGAAAACACAAGGCGGAATTGAGGAATTTGAGAGTGAAAAAAGGGAAAGAGAGGGGAAATGGGAGAGGAAGTGTGAGAGTTGGTCCCTTCGTTTGATTTTTGATAAAGAGAACGAGGCCTGGGCGAGGGCAATTGGGCGAAAAGGGTCGGGTTCAGATTGCCGTCTTCTACCTTCTACAGTGCCTTATTGGGCTGGACCTCTCACCCTAAATCGGCCCAAGCTCATAAATGATTTTTCTATGTATTGA

Protein sequence

MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLPSTVPYWAGPLTLNRPKLINDFSMY*
Homology
[Close]
BLAST of Csa6G088050.1 vs. TrEMBL
Match: A0A0A0KDB5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088050 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 7.8e-43
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP 60
          MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP
Sbjct: 1  MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP 60

Query: 61 STVPYWAGPLTLNRPKLINDFSMY 85
          STVPYWAGPLTLNRPKLINDFSMY
Sbjct: 61 STVPYWAGPLTLNRPKLINDFSMY 84

[Close]
BLAST of Csa6G088050.1 vs. NCBI nr
Match: gi|700191173|gb|KGN46377.1| (hypothetical protein Csa_6G088050 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP 60
          MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP
Sbjct: 1  MKRKTQGGIEEFESEKREREGKWERKCESWSLRLIFDKENEAWARAIGRKGSGSDCRLLP 60

Query: 61 STVPYWAGPLTLNRPKLINDFSMY 85
          STVPYWAGPLTLNRPKLINDFSMY
Sbjct: 61 STVPYWAGPLTLNRPKLINDFSMY 84

The following BLAST results are available for this feature:
BLAST of Csa6G088050.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDB5_CUCSA7.8e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088050 PE=4 SV=1[more]
BLAST of Csa6G088050.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191173|gb|KGN46377.1|1.1e-42100.00hypothetical protein Csa_6G088050 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G088050Csa6G088050gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G088050.1Csa6G088050.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G088050.1.cds1Csa6G088050.1.cds1CDS
Csa6G088050.1.cds2Csa6G088050.1.cds2CDS