Csa6G081490 (gene) Cucumber (Chinese Long) v2

NameCsa6G081490
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
Description60S ribosomal protein L38, putative; contains IPR002675 (Ribosomal protein L38e)
LocationChr6 : 5550483 .. 5551096 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAACTTTCAAAGTTAGGGTTTTGACCCTCCATAATCAGCAACTACGCGGCAGTCTCTGTTCTGCCACCAAAATGGTACCTCTCAATTTCTAATCCTTGATTGAATTTTTTTTCTATTGTTCATTTTCTTAATGCATTTCGGATTCAACCTACTTTTGAATTCTTATGTTTGCTGTCGCCGATTTTTTATCTGCCCTGAATTAGCTTCTGTTCTATTTAGTTGAACGTTGTGAGGGTGCATATCATCATTTAATTTTCTATTCTCGTTGCAATTCTATGGGTTTCTTGTGTTTTTGTTGGTAAACGTTTATGCGGATTTAATAACCGTAATGTACATGTTTTCATCTCGTTTGGATATCTTATGCTTTAGGTTATTTTGAAATTAATCAAATTGTGTCTTCTTGTTCCATATTTGGATTTGCAGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAGGATGTTGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAGGCAGACAAGTTGAAGCAATCCCTTCCACCAGGTTAG

mRNA sequence

ATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAGGATGTTGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAGGCAGACAAGTTGAAGCAATCCCTTCCACCAGGTTAG

Coding sequence (CDS)

ATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAGGATGTTGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAGGCAGACAAGTTGAAGCAATCCCTTCCACCAGGTTAG

Protein sequence

MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG*
BLAST of Csa6G081490 vs. Swiss-Prot
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.5e-28
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 1

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPG 64
          PPG
Sbjct: 61 PPG 63

BLAST of Csa6G081490 vs. Swiss-Prot
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.9e-26
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 1

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 61 PPG 64
          PPG
Sbjct: 61 PPG 63

BLAST of Csa6G081490 vs. Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-24
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

Query: 61 PPG 64
          PPG
Sbjct: 61 PPG 63

BLAST of Csa6G081490 vs. Swiss-Prot
Match: RL38_BOVIN (60S ribosomal protein L38 OS=Bos taurus GN=RPL38 PE=3 SV=4)

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-22
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 1

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPG 64
          PPG
Sbjct: 61 PPG 63

BLAST of Csa6G081490 vs. Swiss-Prot
Match: RL38_HUMAN (60S ribosomal protein L38 OS=Homo sapiens GN=RPL38 PE=1 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-22
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 1

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPG 64
          PPG
Sbjct: 61 PPG 63

BLAST of Csa6G081490 vs. TrEMBL
Match: V7BWX3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G154400g PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPG 64
          PPG
Sbjct: 61 PPG 63

BLAST of Csa6G081490 vs. TrEMBL
Match: A0A068VBT7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007069001 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 36 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 95

Query: 61 PPG 64
          PPG
Sbjct: 96 PPG 98

BLAST of Csa6G081490 vs. TrEMBL
Match: A0A0B2RCI9_GLYSO (60S ribosomal protein L38 OS=Glycine soja GN=glysoja_010467 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPG 64
          PPG
Sbjct: 61 PPG 63

BLAST of Csa6G081490 vs. TrEMBL
Match: D7SPL7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00930 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 59  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 118

Query: 61  PPG 64
           PPG
Sbjct: 119 PPG 121

BLAST of Csa6G081490 vs. TrEMBL
Match: A0A067K3R2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18058 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPG 64
          PPG
Sbjct: 61 PPG 63

BLAST of Csa6G081490 vs. TAIR10
Match: AT2G43460.1 (AT2G43460.1 Ribosomal L38e protein family)

HSP 1 Score: 125.9 bits (315), Expect = 8.7e-30
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 1

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPG 64
          PPG
Sbjct: 61 PPG 63

BLAST of Csa6G081490 vs. TAIR10
Match: AT3G59540.1 (AT3G59540.1 Ribosomal L38e protein family)

HSP 1 Score: 125.9 bits (315), Expect = 8.7e-30
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 1

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPG 64
          PPG
Sbjct: 61 PPG 63

BLAST of Csa6G081490 vs. NCBI nr
Match: gi|802724650|ref|XP_012085801.1| (PREDICTED: 60S ribosomal protein L38 [Jatropha curcas])

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPG 64
          PPG
Sbjct: 61 PPG 63

BLAST of Csa6G081490 vs. NCBI nr
Match: gi|700191104|gb|KGN46308.1| (hypothetical protein Csa_6G081490 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPG 64
          PPG
Sbjct: 61 PPG 63

BLAST of Csa6G081490 vs. NCBI nr
Match: gi|297735234|emb|CBI17596.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 59  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 118

Query: 61  PPG 64
           PPG
Sbjct: 119 PPG 121

BLAST of Csa6G081490 vs. NCBI nr
Match: gi|629123314|gb|KCW87739.1| (hypothetical protein EUGRSUZ_A00108, partial [Eucalyptus grandis])

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 32 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 91

Query: 61 PPG 64
          PPG
Sbjct: 92 PPG 94

BLAST of Csa6G081490 vs. NCBI nr
Match: gi|695075758|ref|XP_009385129.1| (PREDICTED: 60S ribosomal protein L38 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPG 64
          PPG
Sbjct: 61 PPG 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RL38_ARATH1.5e-2895.2460S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1[more]
RL38_SOLLC1.9e-2690.4860S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1[more]
RL38_BRABE1.3e-2485.7160S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1[more]
RL38_BOVIN2.2e-2279.3760S ribosomal protein L38 OS=Bos taurus GN=RPL38 PE=3 SV=4[more]
RL38_HUMAN2.2e-2279.3760S ribosomal protein L38 OS=Homo sapiens GN=RPL38 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
V7BWX3_PHAVU2.0e-27100.00Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G154400g PE=3 SV=1[more]
A0A068VBT7_COFCA2.0e-27100.00Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007069001 PE=3 SV=1[more]
A0A0B2RCI9_GLYSO2.0e-27100.0060S ribosomal protein L38 OS=Glycine soja GN=glysoja_010467 PE=3 SV=1[more]
D7SPL7_VITVI2.0e-27100.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00930 PE=3 SV=... [more]
A0A067K3R2_JATCU2.0e-27100.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18058 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G43460.18.7e-3095.24 Ribosomal L38e protein family[more]
AT3G59540.18.7e-3095.24 Ribosomal L38e protein family[more]
Match NameE-valueIdentityDescription
gi|802724650|ref|XP_012085801.1|2.9e-27100.00PREDICTED: 60S ribosomal protein L38 [Jatropha curcas][more]
gi|700191104|gb|KGN46308.1|2.9e-27100.00hypothetical protein Csa_6G081490 [Cucumis sativus][more]
gi|297735234|emb|CBI17596.3|2.9e-27100.00unnamed protein product [Vitis vinifera][more]
gi|629123314|gb|KCW87739.1|2.9e-27100.00hypothetical protein EUGRSUZ_A00108, partial [Eucalyptus grandis][more]
gi|695075758|ref|XP_009385129.1|2.9e-27100.00PREDICTED: 60S ribosomal protein L38 [Musa acuminata subsp. malaccensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002675Ribosomal_L38e
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0022618 ribonucleoprotein complex assembly
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU108079cucumber EST collection version 3.0transcribed_cluster
CU161735cucumber EST collection version 3.0transcribed_cluster
CU170011cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G081490.1Csa6G081490.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU170011CU170011transcribed_cluster
CU108079CU108079transcribed_cluster
CU161735CU161735transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002675Ribosomal protein L38ePRODOMPD010361coord: 1..63
score: 6.0
IPR002675Ribosomal protein L38ePANTHERPTHR1096560S RIBOSOMAL PROTEIN L38coord: 2..63
score: 2.1
IPR002675Ribosomal protein L38ePFAMPF01781Ribosomal_L38ecoord: 2..63
score: 8.4
NoneNo IPR availablePANTHERPTHR10965:SF3SUBFAMILY NOT NAMEDcoord: 2..63
score: 2.1