Cla97C06G110240 (gene) Watermelon (97103) v2

Overview
NameCla97C06G110240
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Description60S ribosomal protein L38-like
LocationCla97Chr06 : 864392 .. 874820 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACTTCTCAAATTCTAATTCCTAATTTCATTGCTTTTCTATTGTTCATATCCTTCACATACGTTCATGATTCAATCCACTTTTGATTTATTAGTACTATGTTTGCTGTCGCCGACTTGTCATCTGCTCTGATTTAGTTTCTCTTCAACCTTGTTGAACGTTATGAGGCTGCATATCCTCATTAGCTAACAATTTCAGATGTTCTACTCACGCTGAAATTTGAGGCGTTCTTGAGTATTTTTTTGTTAAGGTCTACGAGGATTTAAGTAACAGTTTGAGATGCAGATTTTGTTCCTCAAATTCTTCACTTTTGTGCACACGTCTCCCTCTCGTTTGCATATCTTATGCCTTGGGTTATTTTATAATCAATTCTTTGTCTTTTTGTTCCATATTTCAATTTGCAGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAGATTTTCTTTCTCAAGAACCAACACTGCGATGTTTTAAGAGCATTAATGATATATTGGAAGTAGCTATAACTGTAGCTAGGTGAAGTGTTTTTAATTGGTTAGATAGATTACATACAAGTGTTTCATAATTTGTTTGTGAAGGCTATAAATTTCCGAGGAAGAGGCTAAAAACACTCGTGTGTGCTTTTATCATGTGCTTTTGGCTTAAATGAACCTTAAATTTCCTAAAACACACTTTTTCTTTAGACTAACTTCCCTTTAAGTACAAATAGAAACTCTCCCACAAATCTCCCGCTTGTGATTTTTTCCTCTACAAGTTTGTATGTGCTTCTTGCTTCCATATATCGGTCTCTTTACAAAATTGTGTATTTCTTTAGCACTGCCCACATCACTTATCTTCTTAACCATAAGGATGAATTGCTTACGATGAATCCCCTTGTAGATAGGGGCAAACCCTTCGGCAGGCTTGCTTTTCCCCCTTCCTTGGGGAATTTTTACTTGACTCTTGAGACGAATTTTAGACATTTAGGAGTTTACAGATCTGGGTAGGTTATTAGCTTCTTGGGGGTTCAGTCGTCAAGTTAGGCTTCATTTGTTTGGATTGGTGTTCGGATTCCTTTTTTTCAACTCCCGGCGTATTCATTCACTATCTATGAAAGCATGGTTTCTTGTTAAAATAAATATTAAAATACTATTTTGGTCTTGTATTTTAGGACTTACATTTTAGTTTTGTCTTATTTTAGTCCTCACACCTTCAATTAATTTTTAAGTTTTAGTCTATTTTAGTTTATGGCGAACTTTTTCAAAAAGTATAATGAGATCATCTCTACTATCCTTCATCCCATCAATTCTGGAGGAAAATTTTTTACATTCACTTTTCTTAAATAGAAATTATTATAATTATTTTATGAAGTTTGACATAAAAAAAATATTAACCTCAAACTAACCTAAAATGACTAATTTCAAAATTTAAGAAAGAATATGGACTAAAATTGGACATTTGGGAGTTTTGTGACTAAGTTTGAATGAATCCAAATTACATGGATGAAAATGGTATTTTAACGTAGAACAAAATTGGTGCCTATTACATTTTGCTAGGATGAAGATGACTTTGGTTTGAATACTGACTGACATTTATTTTTCCACTTTGGCAGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTAAAGTCTCAAATGATCACAAGAATGAGAACCAAAATTTTTGTATGATGTTTGCTTTCCCAACTATTCAGAATACATTTAAATTGGATTTGAGCCTTTAGTAATCCGTATTTATCTTCGTTTTCCAGTGGATTGGTTTAAATTTAGAATTGTTATGTTGAGTTTATCATGTGAGTTGATATTTCGTTGAATTCATGGCTACTCCCGCGGTGTTTATAACCAAAGATGGATTTGATTAGCACAACCTTTTTGATATGCGGCAGCAAGCAGTTTGGTTTTTGAACAATACCAAGCTGATCCTTTTATTTTTATTCTTTTTGCCATTTCGTTTTGAATTCTAACATGTGGTTTTAGATACATGTTTTAATTATTTTAACTATGTTCATCTTGGCTATTAAATCATATAGATGCTGAATGTAATGTACGAAATTTACCGCCAAATTTGACGCCCACGCATTCTGTGAACATGATGAGGATTGTTGTGAAATTATTTGGCTTGCATTACTCAAAACTGAGGAAGGTTGAAAACAATTAAAACTCAATTCAACAGTCATTAGGTGTGTAGATGATCGTAACAAAGGAAGCAATTACAGATTATTCATTAGGGGCTTCTCCGTGAAATGTCTTAGTAAAAGGTCTATATTACACTAATGTCTACGACATCCAATTTTTTACATAGAAGGCTTTTTTGTTAAGACTTTTTTTCATTAATGTCAAAGGCTATAAGTTCTCCTCTATGCACAAAGTTTTTTAAGTTTTTTTTTATCCTCCATGCTCGTGCTTAGGACTTTACACCCATTGTTAAATTCTTCCACTTCTACGAATTGGTACTTGGATGGTGTACTGCGCAAAAACTGATAATATCCAAGGCCGCAAGACATTAGATTGCGACATACTCTCTAGAATTCTTTGAGTATTTGGTCACAAGCAGGAGAAGATTGCAAAGTCCGCGAGTTTGTTGGCTGACATGCTTTTTTACCAGTTCATGTCGTTTCTTTTTTTCCCAACTATAATTAACATTTAATAAATTCATTTTAATGCATATAATAGGAGCGAGAAGTGATAAGCGAGCTCAATAAAAATTAGTTGTACTAATTGGAATTTGAGCGAGGATCATGAGTTGATTCAAAAGTGAGAAGCGGGTATGATAATAGTAAATAATTGGCAATAGTGAAATTCTACGTACAGCAAGAGTCTGATCAACTAGTGAGAGCAAAAATTTTACAGAAAGCTTTGAATTTTCAACTAAACACCAGCCTGTCAATTGTGCCATGTACCACCACATTGACTGCATTTCTTGACTGGACACTGTTCTCCAATAAATGGGTCATTAGTATAAATTTTTCAAGACAAAGATGAAAACAAAAAGAGTAGTGTTTGGAGTTGTTCTTATTTTTCCTTATCTACATGATAATTAGTGAATGAGGCAGATAAAAGTGAAAATGGGGGAGAGAGGGAAACAAAAAATGAAACTAAAAATTACTTTGGGATTCACATAAGAAAAAGAAATGGAAAGTTAAAAGATGAAGTCTACCTACAATGTCTATTTTAAACCTCACTAAGTGTATCTATAATGCCAGTCAAAAAATGACATTAAAGATCCATGCTTTTTTTTTTCTCCTTACATTGTACATCAATGCCTCTTTTTTACCAACATCAGAGGTTGTTGTAGAATAATAATAAGTCAACCATCAATGGTATCACAAGAGAAGAATATTTCAATGCCGATTTTTCCATAGATTTCAAGATTAAACTATAAAAGGCCAAGAGTTTATACGATATGGCGTATAAATAATGCAAATCAAATCTAAATATATTAAGTCTACATTTAAAAAAATAAAGAGATTTTCCTTACCAAAAAAAATATATAAAGAGATTTTTTTCCGCAAAACAAGGGGATACTTGCAAAATATGGGGAGAATTTATATTACAATTCGCATTGATTCATTTTTTAAAAAATGAATTTAATTAAATTTACGTGTTTATGTTCAATAAATAAGTAAATGGGCCTTGTTGGATTGGGCTTATCTCAAATGACAGCCCATCTAGGGTTTGAAACAACTAAGTATCATCTTCGTTCCCCTTTGAACCTCCACATAAATGACAACTTCTAAAAGCTAGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGGTACTTCTCAAATTCTAATTCCTAATTTCATTGCTTTTCTATTGTTCTTATCCTTCATATACGTTCATGATTCAATCCACTTTTGATTTATTAGTACTATGTTTGCTGTCGCCGACTTGTCATCTGCTCTGATTTAGTTTCTCTTCTGTCTTGTTGAATGTTACGAGGCTGCATATTCTCATCAGATTACAACTCCAGATGCTCTATTCACGCTGAAATTTGAGGCGTTCTCGAGTTTTTTTGTTTATTGTCTATGCGGAAAGTAAACTTTTTGAGATGTAGATTGTGTTCATCAAATTTGTCACTTTTGTGTACATGTCTCCCTCTCGTTTGCATTTCTTATGCTTTGGGTTATTTTATAATCAATTCTTTTTTTTTTTTTTTTGTTCCATATTTCAATATGCAGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTTGACTCCGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAGATTCGCTTTCTTAAGAACCAACACTGCAATGTTTTAAGAGTATTCCTGATATATTGGAAGTGGCTATAACTATAGCTAGGTGAAGTGTTTTTAATTGGTTAGATAGATTACATACAAGTGTTTCATAATTTGTTTGTGACAACTATAAATTCCCGAGGAAGAGGCTAAAAACACTCATGTGTGCTTTTATCATCTGCTTTTGGCTATAAGTACAAATAGAAGCTCTCCCACAAATCTCTCGCTTGTGATTTTTTTCTCTACAAGTTTGTATTTGCTTCTTGCTTTCTTACACCGGTCTCTTTACAAAATTTTGTGTATTTCTTTAGCACTGCCAACATCTCTATCGTCTTAACCATAAGGATGAATTGCTTACGATGAATCCCCTTGTAGATAGAGGCAAAGTCCTTCGGCAGGCTTGTTTTTCCCCCTTCATTGGGGAATTTTACTCGACTCTTGAGAGGAATTTTAGACTTTTTAGGGGTTGAGAGATCTGGGTGGGTTATTAGTATCTTGGGGCTTCAGTCGTCAGGTTAGACTTCATTTTTGGGTTGGTATTCATTCTAGTTTGTGTCCGGATTCCTTTTCTTCAACTCCCGGTGCATTCTTTCGCTATCTATGAAAGCACGCTTTCTTATTTATGGCCAACTTTTTACGAAAAGTATAATAAGATCATCTCTACTATCCTTCATCGCATAGAAATTATTTACTTTCACTTTTCTTAAATAGAAATTATTGTAATTATTTTATAAAGTTTAATATAAAAAAATATTAACCTCAAACTAACCAAAAAGGACTACTTTTGAAATTTAGGAAAGAACATGACTAAAATTGTACGTTTGAGAGTTTTGTGACTAAATTTGAATGAATCCTACATGGATGAAAATGGTATTTTAACTTCAAACAAAATTGGTGCCTATGATGTTTTGCTAAGATGAGGATGGATTTGGTGTGAATACTGACTGGCGTTTATTGTTCCACTTTGGCAGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTAAAGTCTCAAATGATCGCAAGAATGAGAACTAGTTTTTTTGTATGATGTTTTCTTCCCCAACTATTTAGAATACATTTAAGTTGGATTTGAGCTTGTAGCAATCCATATTTATCTTCGGTTTTCAGTGGATTGGTTGAAATTTAGAATTGATATTTCATTAAATTTATGGCTACTCAAGCAGTGTTTCTAACCAAAGGTGGATTTGATTAGCACAACCTTTTTGATATGGGGCAGCAAACAGTTTGGTTTTTTAACAATACCAAGCTGATCCTTTTATTATTATTTTTTTTTCCATTTCGTTTTGAATTCTAACATGTGGGAGGGTGAGATTCAAATCTTGAATCTCTTTGTTCTAGATACATGTTTCAATTATTTTAACTATGCTCATCTTGGCTATCAAATCATGTAGATGCTGAATGTAATGTTCGACATTTACCACCAAATTTGACCCGCAAACATTTATTTGATCATGACGAGGATTGTTTTGAAATTATTTGCCTTGCATATCTCAGAATTGAGGAAAGTTGAAAATAATTGAAACTCAATTCAACAGCCATTGGATGTGTAGAACATCATAACACTAATGAAGCAATTACAGAAAATTGTCTGATTATTCCTTTTTTAAAAAATTGTTGAAGGATAAATATATTAAAACGTGAGAATTAAATATAGGAAGGTGAGGACACCTTTTTTGGGACTTTCAGCCCAAAAAATCTACTTTGACACTTCATGCGAGGGGAGACTACAAAAACATAAGTTAAAGGTAAGGCTTGCTGTAAGCTTTTAGACTAATTTACTTTCTTTATCGGTGGCACAATAAACTTTATAAACGGGTGGTAAATCACCTTATTGTAATATAAAAGTGCTAACGTCAGTTAAGGTGAAGGTGGTGCCTATCATGACGATTCCAATGACTAACTCGAGTGAAGTTTAAGCTTTGGTTCGTGTTTGTCTAGTTCTTGGGCTAACAAGACAATGTCAATTGTTGCCAATGGTTATGATTTCGGTTATGATGACGTGAAGTTCAAGTTTTGATTCGTGTTTGCCTAGTTCTTAGGCTAACAAGACAATGTCAATTGTTGCCAGTGATCATGATTTTGGTTATGATGACGTGAAGTTCAAGCTTTGATTCGTGTTTGCCTAGTTCTTGGGCTAGCAAGACAATGTCAGTTATTGCCAGGGATTATGATTTTGGTTATGATGACGAAGCTCTCTTTGAGAAGACCTATTGCTACTCTGAATACGAGGTTTTTTGTGTGCCTTCTCCTCATAAGGGGATTGAAACCACTAAAGATTGATGAACTCCTTATGTTGGCTTTTTGGTCTATTGCCTTCAATGGCTTAGTAAGTCTGTGTGCTTTCTACTTGTTGCAAAACCCTTATCACTTAGTTTTTCAACTTCTCGAAAATATATTAGCTAATGAATTAGTAGTCGTTGCATCTAGCATTGGGTAGACCTCATACAATATCTGTCCTAGTTCTACCATATCTTTTGTTTCATTTCTTCTGGAATAATCACAAACACTTCTTTTTATTATGGATCTACTACTAGAAACTCAATGCGTAATCTTAGCATTCAATGTGTATCCCACATCTGAACTGAATTCTTTATGGTTAAAGAATCTCTTTCTACATTTTGCAAGTTCGTTATTACGAGTAGTTCCTACAAAGGATTGGACTAATAATTCAATTGTGTTTTATTTGAAGATAGTATATTTTCTTCTCTATAAACAAGGTCCATTGCCTTTTGATGTCCATTGCCACTTCTATATGCACTAGGCTCATTGGTCCAGTGATGAGCAACTTGTCTTTGAATAGTGGATTTATTCGTGAAATTCGTTTAGGCGCAATAAGGGACTTCATTCTTCCAGACGTAAACCCATTGTTTGTGAGAAAGTCACCAATATATTAGGATTTCCAAGATCCTCAAAAGACGAATTTGAAAGAGGTCCTAGTAAAGGGATCAAATGTTGGAACCTCATGGGTAAGGATAAGGTAATAGAATTGATAGAGAAATTCATGGATCTAGGTGGGATAGGAGAATTGAAAAAGGGAAATAGAGACGATGATAGAGATCACACTGAGAAACAAAGGAATTTTGTATGGGTACAACTCTTATTTGAATGAAAAGAAAAAAAGTGCGATATTTGTTGTCTAATAGAACTAAGACTAATACCTTAATTGGCTCAGTCAGGTTCAAATCAGTGCTTCTTTGATTGCTCAAGACATCTTTTTCAACTGAGAAACAAAACAAGATCATTTCGTTTCATTACGAAGAAGCATATTCCATTAGCAATGAAAAATGGGGTTGAGGGGATCAGTATATGTTCAGGTTGATCAGAAGGTGCGACAATAGCTAAAACTGAATGCGGAAAGCATGGCAAGTGTTTGAGGGTATGGAGCATTTTTTAATCGAGTCTTTTAAGAAGTTATATAAGTTGGATTGGCGCCATTGACGATGTCGTTTTGGGTGATTTTTTTGTGCTTGTTCTTGGAAATCAAAACAAATGTTTGGATCAACTCCTTTTCAAATTTAAGTATGCTTAATCCTATATTGGGTGACCTCTTGAGATCAAGTAGGATTAAAGATGGTATATCAATATATTATAAATGTATTTAATCTATTGAAAAGCCTTGTTAATTATCTTACAAAAAGTTATACTTTTGGGACATGGGCCTAATTTTTATAACTCATTTTATCAATCTGGCCAATCATTAATTATCCAGAAAAAACTTGTACTCGAGTTCATCGAAATGGACTAAACATCATGAATCAAATCGAAATCTAACAATCAGTTTGCCATTTTTCATTATTTATCATTTAATTAATTTTTTATTTTTAATTAAAATTTTCGTGTTTCTAATCAATAAATAGCTAAATGGGCCTTGTTGGATTGGGCTTATCTCAAATGACAGCCCATCTAGGGTTTAGAACAATTAAGTATCATCTTCGTTTCCCTCTGAACCTCCGCATAAATGACAACTTCTAAAAGCTAGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGGTACTTCTCAAATTCTAATTCCTAATTTCATTGCTTTTCTATTGTTCATATCCTTCACATACGTTCATGATTCAATCCACTTTTGATTTATTAGTACTATGTTTGCTGTCGCCGACTTGTCATCTGCTCTGATTTAGTTTCTCTTCAACCTTGTTGAACGTTATGAGGCTGCATATCCTCATTAGCTAACAATTTCAGATGTTCTACTCACGCTGAAATTTGAGGCGTTCTTGAGTATTTTTTTTGTTAAGGTCTACGAGGATTTAAGTAACAGTTTGAGATGCAGATTTTGTTCCTCAAATTCTTCACTTTTGTGCACACGTCTCCCTCTCGTTTGCATATCTTATGCCTTGGGTTATTTTATAATCAATTCTTTGTCTTTTTGTTCCATATTTCAATTTGCAGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAGATTTTCTTTCTCAAGAACCAACACTGCGATGTTTTAAGAGCATTAATGATATATTGGAAGTAGCTATAACTGTAGCTAGGTGAAGTGTTTTTAATTGGTTAGATAGATTACATACAAGTGTTTCATAATTTGTTTGTGAAGGCTATAAATTTCCGAGGAAGAGGCTAAAAACACTCGTGTGTGCTTTTATCATGTGCTTTTGGCTTAAATGAACCTTAAATTTCCTAAAACACACTTTTTCTTTAGACTAACTTCCCTTTAAGTACAAATAGAAACTCTCCCACAAATCTCCCGCTTGTGATTTTTTCCTCTACAAGTTTGTATGTGCTTCTTGCTTCCATATATCGGTCTCTTTACAAAATTGTGTATTTCTTTAGCACTGCCCACATCACTTATCTTCTTAACCATAAGGATGAATTGCTTACGATGAATCCCCTTGTAGATAGGGGCAAACCCTTCGGCAGGCTTGCTTTTCCCCCTTCCTTGGGGAATTTTTACTTGACTCTTGAGACGAATTTTAGACATTTAGGAGTTTACAGATCTGGGTAGGTTATTAGCTTCTTGGGGGTTCAGTCGTCCTGTTAGAGTTCATTTGTTTGGATTGGTGTTCATTCTAGTTGGTGTCCGGATTCGTTTTCTTCAACTCCCGGTGTATTCTTTGACTATCTATGAAGGCATGGTTTCTTATTAAAAAAATATATATTAAAATACCATTTTGGTTTTTTATTTTAGGGCTGGCATTTTAGTTTTGTCTTATTTTTGTCATCACACTTTCAATAAAATTTTAAGTTTTAGTCTATTTTAGTTTATGGCCAACTTTTTCAATTCTGAGGGATAATTTTTTACATTCACTTTTCTTAAATAGAAATTATTATAATTATTTTATAAAGTTCAATATAAAAAAATATTAACCTCAAACTAACCCAAACTAACCTAAAATGGCTAATTTTGAAATTTGTGAAAGAACATGGATTAAAGTTCGACATTTGAGAGTTTTGTCTCTAGGTTTGAATGAATCCCAAATTACATGAATGAAAATAGTATTTTAACTACAAACAAAATTGGTGCCTATGATGTTTGGCTAAGATGAGCATGAATTTGCCCTGCATATTAAATGACATTTATTTTTCTGCTTTGGCAGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTAGTCTCAAATGATCACAAGAATGAGAACTAG

mRNA sequence

ATGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGATAGGGGCAAACCCTTCGGCAGGCTTGCTTTTCCCCCTTCCTTGGGGAATTTTTACTTGACTCTTGAGACGAATTTTAGACATTTAGGAGTTTACAGATCTGGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGATAGGGGCAAACCCTTCGGCAGGCTTGCTTTTCCCCCTTCCTTGGGGAATTTTTACTTGACTCTTGAGACGAATTTTAGACATTTAGGAGTTTACAGATCTGGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTAGTCTCAAATGATCACAAGAATGAGAACTAG

Coding sequence (CDS)

ATGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGATAGGGGCAAACCCTTCGGCAGGCTTGCTTTTCCCCCTTCCTTGGGGAATTTTTACTTGACTCTTGAGACGAATTTTAGACATTTAGGAGTTTACAGATCTGGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGATAGGGGCAAACCCTTCGGCAGGCTTGCTTTTCCCCCTTCCTTGGGGAATTTTTACTTGACTCTTGAGACGAATTTTAGACATTTAGGAGTTTACAGATCTGGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTAGTCTCAAATGATCACAAGAATGAGAACTAG

Protein sequence

MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDRGKPFGRLAFPPSLGNFYLTLETNFRHLGVYRSGFECARSVKEWVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDRGKPFGRLAFPPSLGNFYLTLETNFRHLGVYRSGFECARSVKEWLVSNDHKNEN
Homology
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BLAST of Cla97C06G110240 vs. NCBI nr
Match: KVH95117.1 (Ribosomal protein L38e, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 213.8 bits (543), Expect = 6.6e-52
Identity = 123/186 (66.13%), Postives = 130/186 (69.89%), Query Frame = 0 

Query: 2   PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 61
           PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLP
Sbjct: 15  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKANKLKQSLP 74

Query: 62  PDRGKPFGRLAFPPSLGNFYLTLETNFRHLGVYRSGFECARSVKEWVLSLHNQKLLGNLS 121
           P              L   Y+ L+                  +  W              
Sbjct: 75  P-----------VCLLSFIYIILD------------------IFCWFY------------ 134

Query: 122 SATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKL 181
              T PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KL
Sbjct: 135 ---TQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKANKL 156

Query: 182 KQSLPP 188
           KQSLPP
Sbjct: 195 KQSLPP 156

[Close]
BLAST of Cla97C06G110240 vs. NCBI nr
Match: XP_014812068.1 (PREDICTED: 60S ribosomal protein L38 [Calidris pugnax])

HSP 1 Score: 137.1 bits (344), Expect = 7.8e-29
Identity = 92/187 (49.20%), Postives = 109/187 (58.29%), Query Frame = 0 

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61  PPDRGKPFGRLAFPPSLGNFYLTLETNFRHLGVYRSGFECARSVKEWVLSLHNQKLLGNL 120
           PP  G P+      P  G+                 GF        W       +L G+ 
Sbjct: 61  PP--GIPW------PLEGSV---------------PGF--------W----GGNRLDGSG 120

Query: 121 SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK 180
            S T               A       VKIK++KD VKFKVRCS+YLYTL + D EKA+K
Sbjct: 121 PSGT--------------RALSHHVSPVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEK 138

Query: 181 LKQSLPP 188
           LKQSLPP
Sbjct: 181 LKQSLPP 138

[Close]
BLAST of Cla97C06G110240 vs. NCBI nr
Match: KFD71281.1 (hypothetical protein M514_16628 [Trichuris suis])

HSP 1 Score: 132.1 bits (331), Expect = 2.5e-27
Identity = 83/195 (42.56%), Postives = 114/195 (58.46%), Query Frame = 0 

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK----VRCSKYLYTLCVFDSEKADKL 60
           MP++I EIK+FLLTARR+DARSVKIK++    KFK    +RCSK+LYTL + D+++A+K+
Sbjct: 1   MPREIKEIKEFLLTARRRDARSVKIKKNPFNTKFKLIIQLRCSKFLYTLVIQDNDRAEKI 60

Query: 61  KQSLPPDRGKPFGRLAFPPSLGNFYLTLETNFRHLGVYRSGFECARSVKEWVLSLHNQKL 120
           +QSLPP                                                L  + L
Sbjct: 61  RQSLPP-----------------------------------------------GLQVKDL 120

Query: 121 LGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK----VRCSKYLYTLCV 180
            G       MP++I EIK+FLLTARR+DARSVKIK++    KFK    +RCSK+LYTL +
Sbjct: 121 YG------LMPREIKEIKEFLLTARRRDARSVKIKKNPFNTKFKLIIQLRCSKFLYTLVI 142

Query: 181 FDSEKADKLKQSLPP 188
            D+++A+K++QSLPP
Sbjct: 181 QDNDRAEKIRQSLPP 142

[Close]
BLAST of Cla97C06G110240 vs. NCBI nr
Match: CDP18171.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 128.3 bits (321), Expect = 3.6e-26
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 0 

Query: 121 SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK 180
           SS+  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK
Sbjct: 31  SSSLNMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK 90

Query: 181 LKQSLPP 188
           LKQSLPP
Sbjct: 91  LKQSLPP 97

[Close]
BLAST of Cla97C06G110240 vs. NCBI nr
Match: CDP04642.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 127.9 bits (320), Expect = 4.8e-26
Identity = 71/100 (71.00%), Postives = 77/100 (77.00%), Query Frame = 0 

Query: 88  FRHLGVYRSGFECARSVKEWVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARS 147
           FR+L + R   E  +  +    +LH  + L     A  MPKQIHEIKDFLLTARRKDARS
Sbjct: 3   FRNLILIRLVGEEQQHSRRLNFALHRGEAL-----APKMPKQIHEIKDFLLTARRKDARS 62

Query: 148 VKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP 188
           VKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
Sbjct: 63  VKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP 97

[Close]
BLAST of Cla97C06G110240 vs. TrEMBL
Match: tr|A0A103XQP8|A0A103XQP8_CYNCS (Ribosomal protein L38e (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_002813 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 4.4e-52
Identity = 123/186 (66.13%), Postives = 130/186 (69.89%), Query Frame = 0 

Query: 2   PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 61
           PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLP
Sbjct: 15  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKANKLKQSLP 74

Query: 62  PDRGKPFGRLAFPPSLGNFYLTLETNFRHLGVYRSGFECARSVKEWVLSLHNQKLLGNLS 121
           P              L   Y+ L+                  +  W              
Sbjct: 75  P-----------VCLLSFIYIILD------------------IFCWFY------------ 134

Query: 122 SATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKL 181
              T PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KL
Sbjct: 135 ---TQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKANKL 156

Query: 182 KQSLPP 188
           KQSLPP
Sbjct: 195 KQSLPP 156

[Close]
BLAST of Cla97C06G110240 vs. TrEMBL
Match: tr|A0A0D9X019|A0A0D9X019_9ORYZ (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.9e-48
Identity = 113/187 (60.43%), Postives = 125/187 (66.84%), Query Frame = 0 

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSV+IKR+KD VKFKVRCSKYLYTLCVFD++KA+KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSL 60

Query: 61  PPDRGKPFGRLAFPPSLGNFYLTLETNFRHLGVYRSGFECARSVKEWVLSLHNQKLLGNL 120
           PP                   LT++                                   
Sbjct: 61  PPG------------------LTVQE---------------------------------- 120

Query: 121 SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK 180
                 PKQIHEIKDFLLTARRKDARSV+IKR+KD VKFKVRCSKYLYTLCVFD++KA+K
Sbjct: 121 ------PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANK 129

Query: 181 LKQSLPP 188
           LKQSLPP
Sbjct: 181 LKQSLPP 129

[Close]
BLAST of Cla97C06G110240 vs. TrEMBL
Match: tr|A0A085NP85|A0A085NP85_9BILA (Uncharacterized protein OS=Trichuris suis OX=68888 GN=M514_16628 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.7e-27
Identity = 83/195 (42.56%), Postives = 114/195 (58.46%), Query Frame = 0 

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK----VRCSKYLYTLCVFDSEKADKL 60
           MP++I EIK+FLLTARR+DARSVKIK++    KFK    +RCSK+LYTL + D+++A+K+
Sbjct: 1   MPREIKEIKEFLLTARRRDARSVKIKKNPFNTKFKLIIQLRCSKFLYTLVIQDNDRAEKI 60

Query: 61  KQSLPPDRGKPFGRLAFPPSLGNFYLTLETNFRHLGVYRSGFECARSVKEWVLSLHNQKL 120
           +QSLPP                                                L  + L
Sbjct: 61  RQSLPP-----------------------------------------------GLQVKDL 120

Query: 121 LGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK----VRCSKYLYTLCV 180
            G       MP++I EIK+FLLTARR+DARSVKIK++    KFK    +RCSK+LYTL +
Sbjct: 121 YG------LMPREIKEIKEFLLTARRRDARSVKIKKNPFNTKFKLIIQLRCSKFLYTLVI 142

Query: 181 FDSEKADKLKQSLPP 188
            D+++A+K++QSLPP
Sbjct: 181 QDNDRAEKIRQSLPP 142

[Close]
BLAST of Cla97C06G110240 vs. TrEMBL
Match: tr|A0A068VBT7|A0A068VBT7_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00007069001 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.4e-26
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 0 

Query: 121 SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK 180
           SS+  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK
Sbjct: 31  SSSLNMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK 90

Query: 181 LKQSLPP 188
           LKQSLPP
Sbjct: 91  LKQSLPP 97

[Close]
BLAST of Cla97C06G110240 vs. TrEMBL
Match: tr|A0A068U8M1|A0A068U8M1_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00018662001 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.1e-26
Identity = 71/100 (71.00%), Postives = 77/100 (77.00%), Query Frame = 0 

Query: 88  FRHLGVYRSGFECARSVKEWVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARS 147
           FR+L + R   E  +  +    +LH  + L     A  MPKQIHEIKDFLLTARRKDARS
Sbjct: 3   FRNLILIRLVGEEQQHSRRLNFALHRGEAL-----APKMPKQIHEIKDFLLTARRKDARS 62

Query: 148 VKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP 188
           VKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
Sbjct: 63  VKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP 97

[Close]
BLAST of Cla97C06G110240 vs. Swiss-Prot
Match: sp|O22860|RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.5e-27
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PP 63
          PP
Sbjct: 61 PP 62

[Close]
BLAST of Cla97C06G110240 vs. Swiss-Prot
Match: sp|P46291|RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.0e-24
Identity = 56/62 (90.32%), Postives = 60/62 (96.77%), Query Frame = 0 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 61 PP 63
          PP
Sbjct: 61 PP 62

[Close]
BLAST of Cla97C06G110240 vs. Swiss-Prot
Match: sp|Q95V84|RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.5e-23
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

Query: 61 PP 63
          PP
Sbjct: 61 PP 62

[Close]
BLAST of Cla97C06G110240 vs. Swiss-Prot
Match: sp|Q32PB9|RL38_BOVIN (60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-20
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 0 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PP 63
          PP
Sbjct: 61 PP 62

[Close]
BLAST of Cla97C06G110240 vs. Swiss-Prot
Match: sp|P63173|RL38_HUMAN (60S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-20
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 0 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PP 63
          PP
Sbjct: 61 PP 62

[Close]
BLAST of Cla97C06G110240 vs. TAIR10
Match: AT2G43460.1 (Ribosomal L38e protein family)

HSP 1 Score: 122.1 bits (305), Expect = 4.7e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PP 63
          PP
Sbjct: 61 PP 62

[Close]
BLAST of Cla97C06G110240 vs. TAIR10
Match: AT3G59540.1 (Ribosomal L38e protein family)

HSP 1 Score: 122.1 bits (305), Expect = 4.7e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0 

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PP 63
          PP
Sbjct: 61 PP 62

The following BLAST results are available for this feature:
BLAST of Cla97C06G110240 vs. NCBI nr
Match NameE-valueIdentityDescription
KVH95117.16.6e-5266.13Ribosomal protein L38e, partial [Cynara cardunculus var. scolymus][more]
XP_014812068.17.8e-2949.20PREDICTED: 60S ribosomal protein L38 [Calidris pugnax][more]
KFD71281.12.5e-2742.56hypothetical protein M514_16628 [Trichuris suis][more]
CDP18171.13.6e-2695.52unnamed protein product [Coffea canephora][more]
CDP04642.14.8e-2671.00unnamed protein product [Coffea canephora][more]
BLAST of Cla97C06G110240 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A103XQP8|A0A103XQP8_CYNCS4.4e-5266.13Ribosomal protein L38e (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 G... [more]
tr|A0A0D9X019|A0A0D9X019_9ORYZ2.9e-4860.43Uncharacterized protein OS=Leersia perrieri OX=77586 PE=3 SV=1[more]
tr|A0A085NP85|A0A085NP85_9BILA1.7e-2742.56Uncharacterized protein OS=Trichuris suis OX=68888 GN=M514_16628 PE=3 SV=1[more]
tr|A0A068VBT7|A0A068VBT7_COFCA2.4e-2695.52Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00007069001 PE=3 ... [more]
tr|A0A068U8M1|A0A068U8M1_COFCA3.1e-2671.00Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00018662001 PE=3 ... [more]
BLAST of Cla97C06G110240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O22860|RL38_ARATH8.5e-2795.1660S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1[more]
sp|P46291|RL38_SOLLC1.0e-2490.3260S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1[more]
sp|Q95V84|RL38_BRABE7.5e-2385.4860S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1[more]
sp|Q32PB9|RL38_BOVIN1.2e-2079.0360S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4[more]
sp|P63173|RL38_HUMAN1.2e-2079.0360S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2[more]
BLAST of Cla97C06G110240 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G43460.14.7e-2895.16Ribosomal L38e protein family[more]
AT3G59540.14.7e-2895.16Ribosomal L38e protein family[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR002675Ribosomal_L38e
IPR038464Ribosomal_L38e_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0022618 ribonucleoprotein complex assembly
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G110240.1Cla97C06G110240.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038464Ribosomal protein L38e superfamilyGENE3DG3DSA:3.30.720.90coord: 1..66
e-value: 1.2E-32
score: 113.8
coord: 126..191
e-value: 1.2E-32
score: 113.8
IPR002675Ribosomal protein L38ePFAMPF01781Ribosomal_L38ecoord: 2..63
e-value: 2.2E-31
score: 107.6
coord: 127..188
e-value: 2.2E-31
score: 107.6
IPR002675Ribosomal protein L38ePANTHERPTHR1096560S RIBOSOMAL PROTEIN L38coord: 126..187
IPR002675Ribosomal protein L38ePANTHERPTHR1096560S RIBOSOMAL PROTEIN L38coord: 1..62
IPR002675Ribosomal protein L38ePRODOMPD010361coord: 1..62
e-value: 1.0E-27
score: 306.0
coord: 126..187
e-value: 1.0E-27
score: 306.0
NoneNo IPR availablePANTHERPTHR10965:SF3SUBFAMILY NOT NAMEDcoord: 126..187
NoneNo IPR availablePANTHERPTHR10965:SF3SUBFAMILY NOT NAMEDcoord: 1..62

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C06G110240Cla007019Watermelon (97103) v1wmwmbB407
Cla97C06G110240Csa6G081490Cucumber (Chinese Long) v2cuwmbB468
Cla97C06G110240MELO3C022441Melon (DHL92) v3.5.1mewmbB127
Cla97C06G110240ClCG06G000980Watermelon (Charleston Gray)wcgwmbB273
Cla97C06G110240Cucsa.362150Cucumber (Gy14) v1cgywmbB625
Cla97C06G110240CmaCh08G001900Cucurbita maxima (Rimu)cmawmbB925
Cla97C06G110240CmoCh08G001960Cucurbita moschata (Rifu)cmowmbB900
Cla97C06G110240Lsi09G018420Bottle gourd (USVL1VR-Ls)lsiwmbB026
Cla97C06G110240CsGy6G006470Cucumber (Gy14) v2cgybwmbB446
Cla97C06G110240MELO3C022441.2Melon (DHL92) v3.6.1medwmbB118
Cla97C06G110240CsaV3_6G006830Cucumber (Chinese Long) v3cucwmbB487
Cla97C06G110240Bhi12G002217Wax gourdwgowmbB093
Cla97C06G110240Bhi12G002209Wax gourdwgowmbB098
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C06G110240Silver-seed gourdcarwmbB0079
Cla97C06G110240Silver-seed gourdcarwmbB0800
Cla97C06G110240Cucurbita maxima (Rimu)cmawmbB372
Cla97C06G110240Cucurbita moschata (Rifu)cmowmbB356
Cla97C06G110240Wild cucumber (PI 183967)cpiwmbB495