CmaCh08G001900 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G001900
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	60S ribosomal protein L38
Location	Cma_Chr08 : 1070537 .. 1072340 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACTGATTCCTAATTTCACTGGATTTTCTTTGTATTTGCTCTGCTTGTAATCATTTGAACATGGTAGAGTTAAGGATTTTTCCCCATTTGTTATCATTTTAATGGTAGGTTAAGTTAAATAAATTTCAATTTACTTCTCTTTGGACTGAAATTTGATGAATAAGGTCAAGGAATTTTCATCAGTTGCATGATTCTGCTGTGTTTTGTTGAGTGTATCTTATTTATTCATATCGTTGTTGGAAGATTCTGTTGTTTTACCTTCGCATTCTCATAGCTGAAGTGTTTACTTTATAATTTTTGCAATGTTCGTTCCGATCCATTCCTTTTCGTTCTTTATTAGTTTTGTAGGTTGGATCATTTGACTTATGCAATTGAAAGGGCATCAGATCTCAAACTTTCTTGACGAATTAACGAACGCAATTTCGGTTGTATGCTATATGTCTATTTGTCAATTTCTTTGTGAGAGTACACGTGAAGATTTCTAGTTCTTTGGAAGAATATTAATGAAACATAGATTTCTTGTGTAGAGTAATGTAAAAATTTCAACTTGTGTTCTTTGGACTGAAACTTGTGGTAAAGGAAATTGTTATTGGCTTCATGTCTCTGCTTTGATTATTAGTCATCTGGATTTTACATTAACTTCTGTCCAGATTTGTTGAGTGTTTTGGGTTGGGTTTATTAGCGGTATAAGGTGTTCTTGAAGTTTTTTGGCCAAGGTTTAGAGGTATTCAAGTAATTATTCGAGATTCTGGGACTGTTCGGTTGCCTCACTCATTTGCAAATCTTACTTTTGTGTTATGTTATGATCGATTCTTACTCTTTTTATTCCATAATTCATTGTGCAGCCGAAGCAAATTAACGAGATCAAAGATTTCCTTCTCACTGCCAGAAGGAAGGATGCTCGCTCTGTGAAAATCAAGAGAAGCAAAGATGTGGTCAAGTTCAAAGTTCGATGCTCCAAGTATCTTTATACTCTTTGTGTTTTCGACTCCGAGAAGGCAGAGAAGTTGAAGCAGTCTCTTCCACCAGGTTAACTTTTTGAACAACTACAGTTGTAATTACTTAAAACAATTTCATGCACATAATTATCAGTACTTTAGAATGGTTTAAATTCATATCATAAGGTACTTATGTCTGACCATAATTCAAAACGAGAAGGCCAAGAACATGTATAGGTGCTTCCATTATTTGCTTTTGTCGCCATCAATCTACTAAATCCATTTCTTGTTTCACTTTATCCTCGGCATCGTCGTTATCTCACCGATCTCTTTAAAAATTCTGTTATTAGTCTTGTATTTACCCCTCACTTTCTCTAATCCATGTCTCTGTAAATACTTTTGTGTATTTCCTGATAACTTGCATTGATTCTGTAACGACCTAGATTTTCTAATATAAGTTTTCAAGAAATTCATGTTTTTCTTTGAGGATGACTTCAGTAAGAGTTGTCCATTGAATCTACTCACCAAAGCCTTTGTTTTGTGATCCTAACATGATTACTGAGACCTGACATTTGTTTTACTGATTGTTCATCAGGTTTGAGTGTGCAAGATCTGTGAAAATATGTTGGGTTAGAGCCTGACAGCAAGAAGAGGACCAAAGTTTTTGTTTTAGTTGAAGTTTTTTTGTCCAAGTATTTAGGGAAATACATACATTTTAAAGTGGATTGAGTTTATTATGCAATTCCCAGTTGATGTTTCAGTAAAATTATGTACTCTTGATGTGATTCCCAGTTTTGGTTCCAGCAATCAACTTCTAAACTTTGCAAAATGAATGAAACATGAAAAAATCTGCCTTTTGTTA

mRNA sequence

ATGCCGAAGCAAATTAACGAGATCAAAGATTTCCTTCTCACTGCCAGAAGGAAGGATGCTCGCTCTGTGAAAATCAAGAGAAGCAAAGATGTGGTCAAGTTCAAAGTTCGATGCTCCAAGTATCTTTATACTCTTTGTGTTTTCGACTCCGAGAAGGCAGAGAAGTTGAAGCAGTCTCTTCCACCAGGTTTGAGTGTGCAAGATCTGTGAAAATATGTTGGGTTAGAGCCTGACAGCAAGAAGAGGACCAAAGTTTTTGTTTTAGTTGAAGTTTTTTTGTCCAAGTATTTAGGGAAATACATACATTTTAAAGTGGATTGAGTTTATTATGCAATTCCCAGTTGATGTTTCAGTAAAATTATGTACTCTTGATGTGATTCCCAGTTTTGGTTCCAGCAATCAACTTCTAAACTTTGCAAAATGAATGAAACATGAAAAAATCTGCCTTTTGTTA

Coding sequence (CDS)

ATGCCGAAGCAAATTAACGAGATCAAAGATTTCCTTCTCACTGCCAGAAGGAAGGATGCTCGCTCTGTGAAAATCAAGAGAAGCAAAGATGTGGTCAAGTTCAAAGTTCGATGCTCCAAGTATCTTTATACTCTTTGTGTTTTCGACTCCGAGAAGGCAGAGAAGTTGAAGCAGTCTCTTCCACCAGGTTTGAGTGTGCAAGATCTGTGA

Protein sequence

MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

Homology

[Close]

BLAST of CmaCh08G001900 vs. Swiss-Prot
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 8.8e-30
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSL 60
          MPKQI+EIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of CmaCh08G001900 vs. Swiss-Prot
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-27
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSL 60
          MPKQI+EIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of CmaCh08G001900 vs. Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-24
Identity = 55/69 (79.71%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSL 60
          MPKQI+EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGL+V++L
Sbjct: 61 PPGLAVKEL 69

[Close]

BLAST of CmaCh08G001900 vs. Swiss-Prot
Match: RL38_MOUSE (60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=1 SV=3)

HSP 1 Score: 112.5 bits (280), Expect = 1.9e-24
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKAEKLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGL+V+DL
Sbjct: 61 PPGLAVKDL 69

[Close]

BLAST of CmaCh08G001900 vs. Swiss-Prot
Match: RL38_RAT (60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 5.5e-24
Identity = 54/69 (78.26%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKAEKLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGL+V++L
Sbjct: 61 PPGLAVKEL 69

[Close]

BLAST of CmaCh08G001900 vs. TrEMBL
Match: A0A068VBT7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007069001 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-28
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSL 60
           MPKQI+EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSL
Sbjct: 36  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 95

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 96  PPGLSVQDL 104

[Close]

BLAST of CmaCh08G001900 vs. TrEMBL
Match: A0A0A0KBT2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G081500 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-28
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSL 60
          MPKQI+EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of CmaCh08G001900 vs. TrEMBL
Match: A0A0J8CRR4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g057800 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-28
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSL 60
          MPKQI+EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of CmaCh08G001900 vs. TrEMBL
Match: D7SPL7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00930 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-28
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSL 60
           MPKQI+EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSL
Sbjct: 59  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 118

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 119 PPGLSVQDL 127

[Close]

BLAST of CmaCh08G001900 vs. TrEMBL
Match: A0A059DB65_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A00108 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-28
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSL 60
           MPKQI+EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSL
Sbjct: 32  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 91

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 92  PPGLSVQDL 100

[Close]

BLAST of CmaCh08G001900 vs. TAIR10
Match: AT2G43460.1 (AT2G43460.1 Ribosomal L38e protein family)

HSP 1 Score: 130.2 bits (326), Expect = 5.0e-31
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSL 60
          MPKQI+EIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of CmaCh08G001900 vs. TAIR10
Match: AT3G59540.1 (AT3G59540.1 Ribosomal L38e protein family)

HSP 1 Score: 130.2 bits (326), Expect = 5.0e-31
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSL 60
          MPKQI+EIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of CmaCh08G001900 vs. NCBI nr
Match: gi|729290633|ref|XP_010528118.1| (PREDICTED: 60S ribosomal protein L38 [Tarenaya hassleriana])

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-28
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSL 60
          MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD EKA+KLKQSL
Sbjct: 25 MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDQEKADKLKQSL 84

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 85 PPGLSVQDL 93

[Close]

BLAST of CmaCh08G001900 vs. NCBI nr
Match: gi|629123314|gb|KCW87739.1| (hypothetical protein EUGRSUZ_A00108, partial [Eucalyptus grandis])

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-28
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSL 60
           MPKQI+EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSL
Sbjct: 32  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 91

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 92  PPGLSVQDL 100

[Close]

BLAST of CmaCh08G001900 vs. NCBI nr
Match: gi|297735234|emb|CBI17596.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-28
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSL 60
           MPKQI+EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSL
Sbjct: 59  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 118

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 119 PPGLSVQDL 127

[Close]

BLAST of CmaCh08G001900 vs. NCBI nr
Match: gi|661878012|emb|CDP18171.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-28
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSL 60
           MPKQI+EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSL
Sbjct: 36  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 95

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 96  PPGLSVQDL 104

[Close]

BLAST of CmaCh08G001900 vs. NCBI nr
Match: gi|359476741|ref|XP_003631881.1| (PREDICTED: 60S ribosomal protein L38 [Vitis vinifera])

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-28
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSL 60
          MPKQI+EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

The following BLAST results are available for this feature:

BLAST of CmaCh08G001900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL38_ARATH	8.8e-30	92.75	60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1	[more]
RL38_SOLLC	1.1e-27	88.41	60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1	[more]
RL38_BRABE	1.5e-24	79.71	60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1	[more]
RL38_MOUSE	1.9e-24	79.71	60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=1 SV=3	[more]
RL38_RAT	5.5e-24	78.26	60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2	[more]

BLAST of CmaCh08G001900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A068VBT7_COFCA	1.2e-28	97.10	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007069001 PE=3 SV=1	[more]
A0A0A0KBT2_CUCSA	1.2e-28	97.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G081500 PE=3 SV=1	[more]
A0A0J8CRR4_BETVU	1.2e-28	97.10	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g057800 PE=3 S...	[more]
D7SPL7_VITVI	1.2e-28	97.10	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00930 PE=3 SV=...	[more]
A0A059DB65_EUCGR	1.2e-28	97.10	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A00108 PE=3 ...	[more]

BLAST of CmaCh08G001900 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43460.1	5.0e-31	92.75	Ribosomal L38e protein family	[more]
AT3G59540.1	5.0e-31	92.75	Ribosomal L38e protein family	[more]

BLAST of CmaCh08G001900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|729290633\|ref\|XP_010528118.1\|	1.3e-28	97.10	PREDICTED: 60S ribosomal protein L38 [Tarenaya hassleriana]	[more]
gi\|629123314\|gb\|KCW87739.1\|	1.7e-28	97.10	hypothetical protein EUGRSUZ_A00108, partial [Eucalyptus grandis]	[more]
gi\|297735234\|emb\|CBI17596.3\|	1.7e-28	97.10	unnamed protein product [Vitis vinifera]	[more]
gi\|661878012\|emb\|CDP18171.1\|	1.7e-28	97.10	unnamed protein product [Coffea canephora]	[more]
gi\|359476741\|ref\|XP_003631881.1\|	1.7e-28	97.10	PREDICTED: 60S ribosomal protein L38 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002675	Ribosomal_L38e

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0022618	ribonucleoprotein complex assembly
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G001900.1	CmaCh08G001900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002675	Ribosomal protein L38e	PRODOM	PD010361		coord: 1..69 score: 4.0
IPR002675	Ribosomal protein L38e	PANTHER	PTHR10965	60S RIBOSOMAL PROTEIN L38	coord: 2..69 score: 9.2
IPR002675	Ribosomal protein L38e	PFAM	PF01781	Ribosomal_L38e	coord: 2..68 score: 4.7
None	No IPR available	PANTHER	PTHR10965:SF3	SUBFAMILY NOT NAMED	coord: 2..69 score: 9.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G001900	Cucsa.362150	Cucumber (Gy14) v1	cgycmaB1012
CmaCh08G001900	Cla007019	Watermelon (97103) v1	cmawmB883
CmaCh08G001900	Csa6G081490	Cucumber (Chinese Long) v2	cmacuB908
CmaCh08G001900	MELO3C022441	Melon (DHL92) v3.5.1	cmameB820
CmaCh08G001900	ClCG06G000980	Watermelon (Charleston Gray)	cmawcgB808
CmaCh08G001900	CmoCh08G001960	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G001900	Lsi09G018420	Bottle gourd (USVL1VR-Ls)	cmalsiB815
CmaCh08G001900	Cp4.1LG17g10780	Cucurbita pepo (Zucchini)	cmacpeB914
CmaCh08G001900	MELO3C022441.2	Melon (DHL92) v3.6.1	cmamedB918
CmaCh08G001900	CsaV3_6G006830	Cucumber (Chinese Long) v3	cmacucB1077
CmaCh08G001900	Cla97C06G110240	Watermelon (97103) v2	cmawmbB925
CmaCh08G001900	Bhi12G002209	Wax gourd	cmawgoB1092
CmaCh08G001900	CsGy6G006470	Cucumber (Gy14) v2	cgybcmaB876

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G001900	Cucurbita moschata (Rifu)	cmacmoB903
CmaCh08G001900	Wild cucumber (PI 183967)	cmacpiB928
CmaCh08G001900	Cucurbita pepo (Zucchini)	cmacpeB910
CmaCh08G001900	Silver-seed gourd	carcmaB0112
CmaCh08G001900	Cucurbita maxima (Rimu)	cmacmaB389
CmaCh08G001900	Cucumber (Gy14) v1	cgycmaB0956