Csa6G055970 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G055970
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 4311637 .. 4311852 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTTTTCGGATGACCCATTTCCAAGCTTTTGGGTCGTCGTCCGAAGCGCCTTCAGTGTCCCTTATTGAAGCTTCGGCCATAGATTTTCTAGCTTGGGCGTCGAGGCGAGACCTCTCGGCCTCGAATGCTGGTTCGTCGAAAGGGGGATCGCGTTGTGTATCAGTGCCTCCATTTTTAGTGCTGTCCAGGTTGAAGTGCCTCCTCTGGAAGTGA

mRNA sequence

ATGCGTTTTCGGATGACCCATTTCCAAGCTTTTGGGTCGTCGTCCGAAGCGCCTTCAGTGTCCCTTATTGAAGCTTCGGCCATAGATTTTCTAGCTTGGGCGTCGAGGCGAGACCTCTCGGCCTCGAATGCTGGTTCGTCGAAAGGGGGATCGCGTTGTGTATCAGTGCCTCCATTTTTAGTGCTGTCCAGGTTGAAGTGCCTCCTCTGGAAGTGA

Coding sequence (CDS)

ATGCGTTTTCGGATGACCCATTTCCAAGCTTTTGGGTCGTCGTCCGAAGCGCCTTCAGTGTCCCTTATTGAAGCTTCGGCCATAGATTTTCTAGCTTGGGCGTCGAGGCGAGACCTCTCGGCCTCGAATGCTGGTTCGTCGAAAGGGGGATCGCGTTGTGTATCAGTGCCTCCATTTTTAGTGCTGTCCAGGTTGAAGTGCCTCCTCTGGAAGTGA

Protein sequence

MRFRMTHFQAFGSSSEAPSVSLIEASAIDFLAWASRRDLSASNAGSSKGGSRCVSVPPFLVLSRLKCLLWK*
Homology
[Close]
BLAST of Csa6G055970 vs. TrEMBL
Match: A0A0A0K9I1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G055970 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MRFRMTHFQAFGSSSEAPSVSLIEASAIDFLAWASRRDLSASNAGSSKGGSRCVSVPPFL 60
          MRFRMTHFQAFGSSSEAPSVSLIEASAIDFLAWASRRDLSASNAGSSKGGSRCVSVPPFL
Sbjct: 1  MRFRMTHFQAFGSSSEAPSVSLIEASAIDFLAWASRRDLSASNAGSSKGGSRCVSVPPFL 60

Query: 61 VLSRLKCLLWK 72
          VLSRLKCLLWK
Sbjct: 61 VLSRLKCLLWK 71

[Close]
BLAST of Csa6G055970 vs. NCBI nr
Match: gi|700190924|gb|KGN46128.1| (hypothetical protein Csa_6G055970 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 1.7e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MRFRMTHFQAFGSSSEAPSVSLIEASAIDFLAWASRRDLSASNAGSSKGGSRCVSVPPFL 60
          MRFRMTHFQAFGSSSEAPSVSLIEASAIDFLAWASRRDLSASNAGSSKGGSRCVSVPPFL
Sbjct: 1  MRFRMTHFQAFGSSSEAPSVSLIEASAIDFLAWASRRDLSASNAGSSKGGSRCVSVPPFL 60

Query: 61 VLSRLKCLLWK 72
          VLSRLKCLLWK
Sbjct: 61 VLSRLKCLLWK 71

The following BLAST results are available for this feature:
BLAST of Csa6G055970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9I1_CUCSA1.2e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G055970 PE=4 SV=1[more]
BLAST of Csa6G055970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190924|gb|KGN46128.1|1.7e-31100.00hypothetical protein Csa_6G055970 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G055970.1Csa6G055970.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G055970CmaCh15G005890Cucurbita maxima (Rimu)cmacuB308
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G055970Cucurbita pepo (Zucchini)cpecuB197
Csa6G055970Cucurbita pepo (Zucchini)cpecuB459
Csa6G055970Bottle gourd (USVL1VR-Ls)culsiB478
Csa6G055970Cucumber (Gy14) v2cgybcuB282
Csa6G055970Melon (DHL92) v3.6.1cumedB451
Csa6G055970Silver-seed gourdcarcuB0066
Csa6G055970Silver-seed gourdcarcuB0850
Csa6G055970Watermelon (97103) v2cuwmbB500
Csa6G055970Wax gourdcuwgoB574
Csa6G055970Cucumber (Gy14) v1cgycuB511
Csa6G055970Cucurbita maxima (Rimu)cmacuB767
Csa6G055970Cucurbita moschata (Rifu)cmocuB297
Csa6G055970Cucurbita moschata (Rifu)cmocuB760
Csa6G055970Melon (DHL92) v3.5.1cumeB469
Csa6G055970Watermelon (Charleston Gray)cuwcgB509
Csa6G055970Watermelon (97103) v1cuwmB470