Csa6G055970.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G055970.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 4311637 .. 4311852 (+)
Sequence length216
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTTTTCGGATGACCCATTTCCAAGCTTTTGGGTCGTCGTCCGAAGCGCCTTCAGTGTCCCTTATTGAAGCTTCGGCCATAGATTTTCTAGCTTGGGCGTCGAGGCGAGACCTCTCGGCCTCGAATGCTGGTTCGTCGAAAGGGGGATCGCGTTGTGTATCAGTGCCTCCATTTTTAGTGCTGTCCAGGTTGAAGTGCCTCCTCTGGAAGTGA

mRNA sequence

ATGCGTTTTCGGATGACCCATTTCCAAGCTTTTGGGTCGTCGTCCGAAGCGCCTTCAGTGTCCCTTATTGAAGCTTCGGCCATAGATTTTCTAGCTTGGGCGTCGAGGCGAGACCTCTCGGCCTCGAATGCTGGTTCGTCGAAAGGGGGATCGCGTTGTGTATCAGTGCCTCCATTTTTAGTGCTGTCCAGGTTGAAGTGCCTCCTCTGGAAGTGA

Coding sequence (CDS)

ATGCGTTTTCGGATGACCCATTTCCAAGCTTTTGGGTCGTCGTCCGAAGCGCCTTCAGTGTCCCTTATTGAAGCTTCGGCCATAGATTTTCTAGCTTGGGCGTCGAGGCGAGACCTCTCGGCCTCGAATGCTGGTTCGTCGAAAGGGGGATCGCGTTGTGTATCAGTGCCTCCATTTTTAGTGCTGTCCAGGTTGAAGTGCCTCCTCTGGAAGTGA

Protein sequence

MRFRMTHFQAFGSSSEAPSVSLIEASAIDFLAWASRRDLSASNAGSSKGGSRCVSVPPFLVLSRLKCLLWK*
Homology
[Close]
BLAST of Csa6G055970.1 vs. TrEMBL
Match: A0A0A0K9I1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G055970 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MRFRMTHFQAFGSSSEAPSVSLIEASAIDFLAWASRRDLSASNAGSSKGGSRCVSVPPFL 60
          MRFRMTHFQAFGSSSEAPSVSLIEASAIDFLAWASRRDLSASNAGSSKGGSRCVSVPPFL
Sbjct: 1  MRFRMTHFQAFGSSSEAPSVSLIEASAIDFLAWASRRDLSASNAGSSKGGSRCVSVPPFL 60

Query: 61 VLSRLKCLLWK 72
          VLSRLKCLLWK
Sbjct: 61 VLSRLKCLLWK 71

[Close]
BLAST of Csa6G055970.1 vs. NCBI nr
Match: gi|700190924|gb|KGN46128.1| (hypothetical protein Csa_6G055970 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 1.7e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MRFRMTHFQAFGSSSEAPSVSLIEASAIDFLAWASRRDLSASNAGSSKGGSRCVSVPPFL 60
          MRFRMTHFQAFGSSSEAPSVSLIEASAIDFLAWASRRDLSASNAGSSKGGSRCVSVPPFL
Sbjct: 1  MRFRMTHFQAFGSSSEAPSVSLIEASAIDFLAWASRRDLSASNAGSSKGGSRCVSVPPFL 60

Query: 61 VLSRLKCLLWK 72
          VLSRLKCLLWK
Sbjct: 61 VLSRLKCLLWK 71

The following BLAST results are available for this feature:
BLAST of Csa6G055970.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9I1_CUCSA1.2e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G055970 PE=4 SV=1[more]
BLAST of Csa6G055970.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190924|gb|KGN46128.1|1.7e-31100.00hypothetical protein Csa_6G055970 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G055970Csa6G055970gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G055970.1Csa6G055970.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G055970.1.cds1Csa6G055970.1.cds1CDS