CmaCh15G005890 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh15G005890
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr15 : 2781742 .. 2784490 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCACACGGCAGCGGTTTTCCGGTCTCCCGTTCGATCCGACGTTTGAGCTCCCTGAGTACTCGAACTTGGCTCAGCTTCTCAGGAGACAACATTTCCCAGTAAATGCCTGCAATTCAGAACAATTTGGGGTGTTATATGAGACTCTCTTAATTGATATTTGACAAACTTGTTCATAAACTCATGTCCCTCCAATCTCGAGAAATCTTTTGAAATATGAAAAGAAAAGACATCTTTAGTAGGAAAAAATTTGACTTGAAGTTCTACAATTATTGAATATAGATGCAGGCACCTGAAATAACAGGACTTGTATTTCAAGAGGGGAGTTTGGCATGGATAAAGCAAAGCTGCTAACCTTGGGGTTTAGGGATTTTCGTGTTGGTTAAAATGACCTGCGTTGGTGTGCATACGATGTCTACGGGCACGTCGTGGACTAATAGCTTCTCAACTGGAATATCATCAACCAACTGGCAATCATGCACTGCAAGCCATCGGAAGTTCGTATTACGACATGATATTTGATAAACATGTATAACCCAAAAGCACAAAGACTATATAACGGCCCAAGCCCACCGCTAGCAGGTATTGTCCTCTTTGGGTTTTCTCTTTTGGGGTTTCTCTCAAAGGTTTTAAAACGTGTCTACTAGAAAGAAGTTTCTACACTCTTATATAGAATGTTTCGTTTTCGTGTCCAACCGATGTGGGATCTCACAAAGACACTATGAACTTTTAAAATGTCTCAATGACATGTAAGCTATCAATTTGTACCTAAACTTCTGGTTGTTTACCAACAGCTCTCTGCACATGTATTATCTCAACAGCTCGACATATGGTATCTCGACCGATAATTTGAAAACAAGCTCTCTTTTATTGAGGATGGGGAGGTCTGAAAATAATATATATTGGGAAATTAACTGCTAAACTATCTACATGGATAAAATTGCACGATCGAAGTTCACTGTAAAGAATATTTTGATATCAAGCACTGAAATTTATCAACACAACATCATGTTGCTGAAAATAATAAAAAGAATGAGATGCTACAAGATAAGATAGAAGCAGGGTAGTTATACAACCAGAAGTAACAATTGGAGTCGAGTCATCAATGGCGCCCATGTACCGAAGCATTCCATATTCCAGTTCTGCAAATCCCTGCACTTAGTGGAGGTTAAATTATAAGTTTGGTTTATAAACTTTTAGAGTTTGTTTGAATCGAGTAAAGAAACATAGATAGAATCAAGTATACTCGTTCCATTGCATAAGAGGGCTTGTTCGAATTCACTTTCTAAGGGCTTAAAAACACTTTGTTTAAGCACGTTATTTCAAACAGACCCTTAATCAATACATTCCATTTCCAAAGTGGCAAAACCGAGGATTATCAAATCTTCCGAGCAAATATGTTTTAAGCCAACAGTAACACTTTTACCTCACCCTTGCCAAGGCGAGCACCTGTTCTGGGATCAACAGCAACAGAGCCAATGACGATCAGATCGACTTTGATCTTTTCATCAAGTCCAATTGGCTCTCCATACTTTGCTACCCCAACAGAAGTGCAGGCCTCCTTGATGGTAGCAGAAGTCAGCATTCCGGATTCGACTATGGAGAAAAAACCTGTTCTCAACCGAGGCTGAGGTGTCAATAGTTTTTTGCCACCTGATCATAATCAAAATACAATTTAGTTTGTGATTTAACCTGAAAAAATCTGTCATGCTTGTCATGCTTGTCAAGAATCAAAGATGATACATACGATTCAGTGGAAGTTTACATTGTATTGATTCAACGTAACAGCCCAAGCCTACCGCTAGTAGATATTGTCTTCTTTGGGCTTTCCCTTCAAGGGCTTCCCCTTGAGGTTTTAAAACACGTCTACTAGGAAGAGGTTTCTACACCCTTATACGGAATGCTTCATTGTCTTCTACAACCGATGTGGGATCTCACTTTCAACCACCTCAAAATGATAACTAAATTGGACTACGTAGTCCACACATCCAACCACCACGTTTGCCAATAGAAATTCATAATTTCAGATCTTTATTAGTTTTAGTAATAAACTAAACTAAGACATGAACAGTTGACACATTTTGAAGTTTCCCCTCACATCACTTGGGCTTTGTAAGATTCGAATCCAACATCCTTGAGTGAACTCTGTTCTTGATAATCACTACAGGGTTGTGCAGAAAAGCAAAAAATGTATTGTTCACTTGCATTGAAACATAGTCTCTTGACGATATTGTAAATGGCAGACAGTGGTAGATATTTCATTAAAAGTATCAGCAGAACTGACCCATAAGTGTAAGAAGCCTCACACCCTTCTGAGGTGAATCCGGATTAACCTTCACGCACTGCGAATCCCTGAATACTTCCAAATCGCACAACTGATACAACTCCATTTCATCAGGTATATACGGAAGGAATCAAAATTTCCAACACTGAAAAGATCGACTCAAACATTTAATTTACAACAAAACAATTCAGGAATTAAGGAGCTCACTCTGTTAGCAGCTTCCATGGCGCCGACAAAATTAGGGATTCGATGATGAACAGGTCGGGGATTAGCAGCAATGTTTAGAGATTCCATAAAATCCCAGATTCGTTTCCGGATCACCCACTTCCAAGCTTTCGGATCGTCGTCCGAAGCGCCTTCAGTGTCCCTTACAGAAGCTTCGGCCATGGATTTCATAGCTAGGGCGTCGAGGCGAGATCTCTCCGCCTCGAATGCAGCTTCGTCGAAAGCGCCTTCGCGTTGA

mRNA sequence

ATGGGCCACACGGCAGCGGTTTTCCGGTCTCCCGTTCGATCCGACGCACCTGAAATAACAGGACTTGCGAGCACCTGTTCTGGGATCAACAGCAACAGAGCCAATGACGATCAGATCGACTTTGATCTTTTCATCAAGTCCAATTGGCTCTCCATACTTTGCTACCCCAACAGAAGTGCAGGCCTCCTTGATGGTAGCAGAAGTCAGCATTCCGGATTCGACTATGGAGAAAAAACCTGTTCTCAACCGAGGCTGAGCTTCCATGGCGCCGACAAAATTAGGGATTCGATGATGAACAGGTCGGGGATTAGCAGCAATATTCGTTTCCGGATCACCCACTTCCAAGCTTTCGGATCGTCGTCCGAAGCGCCTTCAGTGTCCCTTACAGAAGCTTCGGCCATGGATTTCATAGCTAGGGCGTCGAGGCGAGATCTCTCCGCCTCGAATGCAGCTTCGTCGAAAGCGCCTTCGCGTTGA

Coding sequence (CDS)

ATGGGCCACACGGCAGCGGTTTTCCGGTCTCCCGTTCGATCCGACGCACCTGAAATAACAGGACTTGCGAGCACCTGTTCTGGGATCAACAGCAACAGAGCCAATGACGATCAGATCGACTTTGATCTTTTCATCAAGTCCAATTGGCTCTCCATACTTTGCTACCCCAACAGAAGTGCAGGCCTCCTTGATGGTAGCAGAAGTCAGCATTCCGGATTCGACTATGGAGAAAAAACCTGTTCTCAACCGAGGCTGAGCTTCCATGGCGCCGACAAAATTAGGGATTCGATGATGAACAGGTCGGGGATTAGCAGCAATATTCGTTTCCGGATCACCCACTTCCAAGCTTTCGGATCGTCGTCCGAAGCGCCTTCAGTGTCCCTTACAGAAGCTTCGGCCATGGATTTCATAGCTAGGGCGTCGAGGCGAGATCTCTCCGCCTCGAATGCAGCTTCGTCGAAAGCGCCTTCGCGTTGA

Protein sequence

MGHTAAVFRSPVRSDAPEITGLASTCSGINSNRANDDQIDFDLFIKSNWLSILCYPNRSAGLLDGSRSQHSGFDYGEKTCSQPRLSFHGADKIRDSMMNRSGISSNIRFRITHFQAFGSSSEAPSVSLTEASAMDFIARASRRDLSASNAASSKAPSR
Homology
[Close]
BLAST of CmaCh15G005890 vs. TrEMBL
Match: A0A0A0K9I1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G055970 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 1 

Query: 107 IRFRITHFQAFGSSSEAPSVSLTEASAMDFIARASRRDLSASNAASSKAPSR 159
           +RFR+THFQAFGSSSEAPSVSL EASA+DF+A ASRRDLSASNA SSK  SR
Sbjct: 1   MRFRMTHFQAFGSSSEAPSVSLIEASAIDFLAWASRRDLSASNAGSSKGGSR 52

[Close]
BLAST of CmaCh15G005890 vs. NCBI nr
Match: gi|700190924|gb|KGN46128.1| (hypothetical protein Csa_6G055970 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 5.5e-11
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 1 

Query: 107 IRFRITHFQAFGSSSEAPSVSLTEASAMDFIARASRRDLSASNAASSKAPSR 159
           +RFR+THFQAFGSSSEAPSVSL EASA+DF+A ASRRDLSASNA SSK  SR
Sbjct: 1   MRFRMTHFQAFGSSSEAPSVSLIEASAIDFLAWASRRDLSASNAGSSKGGSR 52

The following BLAST results are available for this feature:
BLAST of CmaCh15G005890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh15G005890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9I1_CUCSA3.8e-1182.69Uncharacterized protein OS=Cucumis sativus GN=Csa_6G055970 PE=4 SV=1[more]
BLAST of CmaCh15G005890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh15G005890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190924|gb|KGN46128.1|5.5e-1182.69hypothetical protein Csa_6G055970 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G005890.1CmaCh15G005890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh15G005890Csa6G055970Cucumber (Chinese Long) v2cmacuB308
CmaCh15G005890Cp4.1LG13g03980Cucurbita pepo (Zucchini)cmacpeB305
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh15G005890Cucumber (Gy14) v2cgybcmaB740
CmaCh15G005890Cucumber (Gy14) v2cgybcmaB917
CmaCh15G005890Melon (DHL92) v3.6.1cmamedB309
CmaCh15G005890Silver-seed gourdcarcmaB0087
CmaCh15G005890Silver-seed gourdcarcmaB1148
CmaCh15G005890Cucumber (Chinese Long) v3cmacucB0362
CmaCh15G005890Cucumber (Chinese Long) v3cmacucB0370
CmaCh15G005890Watermelon (97103) v2cmawmbB319
CmaCh15G005890Watermelon (97103) v2cmawmbB323
CmaCh15G005890Wax gourdcmawgoB0391
CmaCh15G005890Cucurbita maxima (Rimu)cmacmaB325
CmaCh15G005890Cucumber (Gy14) v1cgycmaB0135
CmaCh15G005890Cucumber (Gy14) v1cgycmaB0995
CmaCh15G005890Cucurbita moschata (Rifu)cmacmoB283
CmaCh15G005890Cucurbita moschata (Rifu)cmacmoB287
CmaCh15G005890Cucurbita moschata (Rifu)cmacmoB309
CmaCh15G005890Wild cucumber (PI 183967)cmacpiB315
CmaCh15G005890Cucumber (Chinese Long) v2cmacuB317
CmaCh15G005890Melon (DHL92) v3.5.1cmameB268
CmaCh15G005890Watermelon (Charleston Gray)cmawcgB245
CmaCh15G005890Watermelon (Charleston Gray)cmawcgB273
CmaCh15G005890Watermelon (97103) v1cmawmB253
CmaCh15G005890Watermelon (97103) v1cmawmB260
CmaCh15G005890Cucurbita pepo (Zucchini)cmacpeB318
CmaCh15G005890Cucurbita pepo (Zucchini)cmacpeB335
CmaCh15G005890Bottle gourd (USVL1VR-Ls)cmalsiB273
CmaCh15G005890Bottle gourd (USVL1VR-Ls)cmalsiB294