Csa6G040570 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G040570
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 2900754 .. 2902271 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAATGGACTAGAGGCATGTGCCTCTTACCCCATGTAGATCCACCAAGACTCCATTGCATTGCCTGCAATAAATTGAAAAAACTGTATATCTAGTTCATCAACGTAAGAAAATAAATGTGTGAAGGGTGAATCGTCAATGATGAAGACGTGCTAAGTGGGTTAAACGTTCTATATGACCATGGGGTCATCTGTACAAAGAAACACCTTTTTATGGCATAATGGAAAACGATGAAAGAAAAGATCCCTAATTTCTATTTTCTGTGTGTTGTTTGGAGAAATGGGGGCAGAATACAATAGGTGAGAAACTAAGGGCGAGCTCCATTCAAGAGGGTTTAGTCGAACGATTCCGTTCTCTCTCCTCGATCCGATTTGAAGAAACAGAGAGGAAGAGCGTGATGCGAGGAACTGGAGGACCTCTTCTTTGCATTGGCGATCTTCTCTGCGATGTCGGAGAAGACGAAGCCGTAGAAGGAAAGGGTTTGAATGAAACCCCCAGATCAATTCCATCTCCATCTTCTTCCTCTTCTTCTGTTTCCACCACAATTTTCGACCTATCTCAACCCCCCGATCTCCCCAAACTCTTCCAGGTTTCCTCCTCATCCTTCCATTTCCCTTTCCAATTGTTCATTTTGCTAATATTGATTCTATCTACGATTGCGAATGTGATAAGGACTTTACCTATTTTGCTGTATGTTTATTTCCTGTTTCAAATATCATAGCTGCGAGAATTTCACCCTACCCATCTTCTTCTTCAGGAAAATTACGACCAATTGAACAAAGTATTTGATGATAATGATCACTCATGGACTGCTTTGACATTGAAGGTAGGCTGTTTCGCGTGCTGGACATTGAGTACTTATACATTGATATGAAATAATGTCTGTAGCTTACCATTCGATTTCTACAACCCGTTCTTTCCCCATTTCCTTTGATTTGAACAACTGCTTGATTTTTGGGGAGAAGCATTATTTCCTTATATATGACTAATTGGGGCATTTTCAGATGTGCAGTGCTCTTGATACTGCTACCAAGTTGGTTGAATCAACCAACTCGAATTCAAGATTTTTGTTGGAGAAGATTGTTGAGCTTGAACATGTTTTGGAAAAGGGAGATGCTACAAGAGAGGCAGCCATGGCCATCCAAACAAGCTATAGCTCTCATGTTGCTCAAGACTCCATTTCTTCTCTGAATGAAGGTTAGCATAGGCTTGTACTTCAAAGGTTTTCTCATTACTGAAGCCTGATGGAAATTTAATCTTCATAAATGCTCGTTTAGGGTAATTTACATATTCACAGCTTTGATTCATGCTCTTGTTTTTCTTATGCGGTAGGGTGTTGTTGAGAAAATTTTGTTTTCTAATTATTTGTCATCATATTTTGATTGGATTAGAATTAGTAATTCGACTAAATAGAATAAGGTTTATATTGTATTTTGGTCCCTAAAAGTTCTTTCCACTGTCCTTCCTGAATTTTCAAATATTCATTTTAGTTCTTCAACATAAAATGTTCTATTTTGGT

mRNA sequence

ATGCGAGGAACTGGAGGACCTCTTCTTTGCATTGGCGATCTTCTCTGCGATGTCGGAGAAGACGAAGCCGTAGAAGGAAAGGGTTTGAATGAAACCCCCAGATCAATTCCATCTCCATCTTCTTCCTCTTCTTCTGTTTCCACCACAATTTTCGACCTATCTCAACCCCCCGATCTCCCCAAACTCTTCCAGGAAAATTACGACCAATTGAACAAAGTATTTGATGATAATGATCACTCATGGACTGCTTTGACATTGAAGATGTGCAGTGCTCTTGATACTGCTACCAAGTTGGTTGAATCAACCAACTCGAATTCAAGATTTTTGTTGGAGAAGATTGTTGAGCTTGAACATGTTTTGGAAAAGGGAGATGCTACAAGAGAGGCAGCCATGGCCATCCAAACAAGCTATAGCTCTCATGTTGCTCAAGACTCCATTTCTTCTCTGAATGAAGGTTAG

Coding sequence (CDS)

ATGCGAGGAACTGGAGGACCTCTTCTTTGCATTGGCGATCTTCTCTGCGATGTCGGAGAAGACGAAGCCGTAGAAGGAAAGGGTTTGAATGAAACCCCCAGATCAATTCCATCTCCATCTTCTTCCTCTTCTTCTGTTTCCACCACAATTTTCGACCTATCTCAACCCCCCGATCTCCCCAAACTCTTCCAGGAAAATTACGACCAATTGAACAAAGTATTTGATGATAATGATCACTCATGGACTGCTTTGACATTGAAGATGTGCAGTGCTCTTGATACTGCTACCAAGTTGGTTGAATCAACCAACTCGAATTCAAGATTTTTGTTGGAGAAGATTGTTGAGCTTGAACATGTTTTGGAAAAGGGAGATGCTACAAGAGAGGCAGCCATGGCCATCCAAACAAGCTATAGCTCTCATGTTGCTCAAGACTCCATTTCTTCTCTGAATGAAGGTTAG

Protein sequence

MRGTGGPLLCIGDLLCDVGEDEAVEGKGLNETPRSIPSPSSSSSSVSTTIFDLSQPPDLPKLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVLEKGDATREAAMAIQTSYSSHVAQDSISSLNEG*

Homology

[Close]

BLAST of Csa6G040570 vs. TrEMBL
Match: A0A0A0K969_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G040570 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.9e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 1   MRGTGGPLLCIGDLLCDVGEDEAVEGKGLNETPRSIPSPSSSSSSVSTTIFDLSQPPDLP 60
           MRGTGGPLLCIGDLLCDVGEDEAVEGKGLNETPRSIPSPSSSSSSVSTTIFDLSQPPDLP
Sbjct: 1   MRGTGGPLLCIGDLLCDVGEDEAVEGKGLNETPRSIPSPSSSSSSVSTTIFDLSQPPDLP 60

Query: 61  KLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120
           KLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL
Sbjct: 61  KLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120

Query: 121 EKGDATREAAMAIQTSYSSHVAQDSISSLNEG 153
           EKGDATREAAMAIQTSYSSHVAQDSISSLNEG
Sbjct: 121 EKGDATREAAMAIQTSYSSHVAQDSISSLNEG 152

[Close]

BLAST of Csa6G040570 vs. TrEMBL
Match: A0A061FGR1_THECC (Histone-lysine N-methyltransferase SUV420H14-20, putative OS=Theobroma cacao GN=TCM_035068 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.8e-29
Identity = 70/133 (52.63%), Postives = 93/133 (69.92%), Query Frame = 1


Query: 1   MRGTGGPLLCIGDLLCDVGEDEAVEGKGLNETPRSIPSPSSSSSSVSTTIFDLSQPPDLP 60
           MRG GGPLL IGDLL DVG++       L+    ++PSPSSS    +    D+ Q  DL 
Sbjct: 1   MRGVGGPLLTIGDLLSDVGDESGAAPDHLHHHDTTLPSPSSSIFDAN----DVPQSLDLT 60

Query: 61  KLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120
           KLFQENY++LN+    +DHSWTALTLK+C+AL+TA KLV+ST++N R L EK+ ELE ++
Sbjct: 61  KLFQENYEKLNEALSGSDHSWTALTLKLCTALETANKLVQSTDTNIRLLSEKVAELEKIV 120

Query: 121 EKGDATREAAMAI 134
           ++GD+   AA AI
Sbjct: 121 KRGDSAITAARAI 129

[Close]

BLAST of Csa6G040570 vs. TrEMBL
Match: G7K8T8_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_5g058660 PE=4 SV=2)

HSP 1 Score: 135.2 bits (339), Expect = 6.8e-29
Identity = 77/148 (52.03%), Postives = 99/148 (66.89%), Query Frame = 1


Query: 1   MRGTGGPLLCIGDLLCDVGEDEAVEGKGLNETPRSIPSPSSSSSSVSTTIFDLSQPPDLP 60
           MRG GGPLLCIGDLL DVGE+   E +G+ +T     SPSSS S ++         P L 
Sbjct: 1   MRGIGGPLLCIGDLLTDVGEEN--EQEGIEKT-----SPSSSLSDLNNNAL-----PHLT 60

Query: 61  KLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120
           KLFQENYD LN   +  DHSWT+LTLK+C++LDTA KLV+STNSN   LLEK+ ELE ++
Sbjct: 61  KLFQENYDHLNSALNATDHSWTSLTLKLCTSLDTANKLVQSTNSNVASLLEKVEELEKIV 120

Query: 121 EKGDATREAAMAIQTSYSSHVAQDSISS 149
           ++GD+      AI  + + +VA D+ SS
Sbjct: 121 KRGDS------AIAATKAFYVAPDNNSS 130

[Close]

BLAST of Csa6G040570 vs. TrEMBL
Match: A0A067GLZ3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031692mg PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.8e-29
Identity = 76/146 (52.05%), Postives = 93/146 (63.70%), Query Frame = 1


Query: 1   MRGTGGPLLCIGDLLCDVGEDEAVEGKGLNETPRSIPSPSSSSSSVSTTIFDLSQPP--- 60
           MRG GGPLL IGDLL DVG +                S SS SSS S+ + D +  P   
Sbjct: 13  MRGIGGPLLTIGDLLSDVGGETVTA------------SDSSHSSSPSSLVQDSNSTPHSL 72

Query: 61  DLPKLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELE 120
           DL KLFQENYDQLNK F  +DHSWTALTLK+C+AL+TA KLV+STN+N   L EK++ELE
Sbjct: 73  DLTKLFQENYDQLNKAFSGSDHSWTALTLKLCTALETANKLVQSTNTNVTLLSEKVLELE 132

Query: 121 HVLEKGDATREAAMAIQTSYSSHVAQ 144
            V+++ D+   AA AI  S +    Q
Sbjct: 133 RVVQREDSATSAAKAINVSLNRKQGQ 146

[Close]

BLAST of Csa6G040570 vs. TrEMBL
Match: V4T2M5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002759mg PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-28
Identity = 76/146 (52.05%), Postives = 93/146 (63.70%), Query Frame = 1


Query: 1   MRGTGGPLLCIGDLLCDVGEDEAVEGKGLNETPRSIPSPSSSSSSVSTTIFDLSQPP--- 60
           MRG GGPLL IGDLL DVG +                S SS SSS S+ + D +  P   
Sbjct: 13  MRGIGGPLLTIGDLLSDVGGETVTA------------SDSSHSSSPSSLVQDSNSTPHSL 72

Query: 61  DLPKLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELE 120
           DL KLFQENYDQLNK F  +DHSWTALTLK+C+AL+TA KLV+STN+N   L EK++ELE
Sbjct: 73  DLTKLFQENYDQLNKAFSGSDHSWTALTLKLCTALETANKLVQSTNTNVTLLSEKVLELE 132

Query: 121 HVLEKGDATREAAMAIQTSYSSHVAQ 144
            V+++ D+   AA AI  S +    Q
Sbjct: 133 RVVKREDSATAAAKAINVSLNRKQGQ 146

[Close]

BLAST of Csa6G040570 vs. TAIR10
Match: AT4G08240.2 (AT4G08240.2 unknown protein)

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-29
Identity = 64/136 (47.06%), Postives = 90/136 (66.18%), Query Frame = 1


Query: 1   MRGTGGPLLCIGDLLCDVGEDEAVEGKGLNETPRSIPSPSSSSSSVSTTIFDLSQPPDLP 60
           MRG GGPLL IGDLL D+G++          +P++ P+P  SS S S     +S P DL 
Sbjct: 1   MRGVGGPLLSIGDLLADLGDETG-------HSPQNHPNPEVSSKSYSDDT--ISGPLDLT 60

Query: 61  KLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120
           +LFQENYD+LN  F  +DHSWT+LTL++C++L+TA KLV +T +N+R L EK+ ELE ++
Sbjct: 61  RLFQENYDKLNDAFAGSDHSWTSLTLELCTSLETANKLVHATTTNARLLSEKVEELEKIV 120

Query: 121 EKGDATREAAMAIQTS 137
           ++GD+   AA  +  +
Sbjct: 121 KRGDSAVAAARTVHAT 127

[Close]

BLAST of Csa6G040570 vs. NCBI nr
Match: gi|449446209|ref|XP_004140864.1| (PREDICTED: uncharacterized protein LOC101219718 [Cucumis sativus])

HSP 1 Score: 303.1 bits (775), Expect = 2.7e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 1   MRGTGGPLLCIGDLLCDVGEDEAVEGKGLNETPRSIPSPSSSSSSVSTTIFDLSQPPDLP 60
           MRGTGGPLLCIGDLLCDVGEDEAVEGKGLNETPRSIPSPSSSSSSVSTTIFDLSQPPDLP
Sbjct: 1   MRGTGGPLLCIGDLLCDVGEDEAVEGKGLNETPRSIPSPSSSSSSVSTTIFDLSQPPDLP 60

Query: 61  KLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120
           KLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL
Sbjct: 61  KLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120

Query: 121 EKGDATREAAMAIQTSYSSHVAQDSISSLNEG 153
           EKGDATREAAMAIQTSYSSHVAQDSISSLNEG
Sbjct: 121 EKGDATREAAMAIQTSYSSHVAQDSISSLNEG 152

[Close]

BLAST of Csa6G040570 vs. NCBI nr
Match: gi|659089754|ref|XP_008445675.1| (PREDICTED: uncharacterized protein LOC103488633 isoform X3 [Cucumis melo])

HSP 1 Score: 294.7 bits (753), Expect = 9.6e-77
Identity = 146/152 (96.05%), Postives = 151/152 (99.34%), Query Frame = 1


Query: 1   MRGTGGPLLCIGDLLCDVGEDEAVEGKGLNETPRSIPSPSSSSSSVSTTIFDLSQPPDLP 60
           MRGTGGPLLCIGDLLCDVGE+EAVEGKGLNETP+SIPSPSSSSSSVSTT+FDLSQPPDLP
Sbjct: 1   MRGTGGPLLCIGDLLCDVGEEEAVEGKGLNETPKSIPSPSSSSSSVSTTLFDLSQPPDLP 60

Query: 61  KLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120
           +LFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL
Sbjct: 61  QLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120

Query: 121 EKGDATREAAMAIQTSYSSHVAQDSISSLNEG 153
           EKGDATREAAMAIQTSYSS +AQDSISSLNEG
Sbjct: 121 EKGDATREAAMAIQTSYSSQIAQDSISSLNEG 152

[Close]

BLAST of Csa6G040570 vs. NCBI nr
Match: gi|659089757|ref|XP_008445676.1| (PREDICTED: uncharacterized protein LOC103488633 isoform X4 [Cucumis melo])

HSP 1 Score: 294.7 bits (753), Expect = 9.6e-77
Identity = 146/152 (96.05%), Postives = 151/152 (99.34%), Query Frame = 1


Query: 1   MRGTGGPLLCIGDLLCDVGEDEAVEGKGLNETPRSIPSPSSSSSSVSTTIFDLSQPPDLP 60
           MRGTGGPLLCIGDLLCDVGE+EAVEGKGLNETP+SIPSPSSSSSSVSTT+FDLSQPPDLP
Sbjct: 1   MRGTGGPLLCIGDLLCDVGEEEAVEGKGLNETPKSIPSPSSSSSSVSTTLFDLSQPPDLP 60

Query: 61  KLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120
           +LFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL
Sbjct: 61  QLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120

Query: 121 EKGDATREAAMAIQTSYSSHVAQDSISSLNEG 153
           EKGDATREAAMAIQTSYSS +AQDSISSLNEG
Sbjct: 121 EKGDATREAAMAIQTSYSSQIAQDSISSLNEG 152

[Close]

BLAST of Csa6G040570 vs. NCBI nr
Match: gi|659089759|ref|XP_008445677.1| (PREDICTED: uncharacterized protein LOC103488633 isoform X5 [Cucumis melo])

HSP 1 Score: 292.4 bits (747), Expect = 4.7e-76
Identity = 145/151 (96.03%), Postives = 150/151 (99.34%), Query Frame = 1


Query: 1   MRGTGGPLLCIGDLLCDVGEDEAVEGKGLNETPRSIPSPSSSSSSVSTTIFDLSQPPDLP 60
           MRGTGGPLLCIGDLLCDVGE+EAVEGKGLNETP+SIPSPSSSSSSVSTT+FDLSQPPDLP
Sbjct: 1   MRGTGGPLLCIGDLLCDVGEEEAVEGKGLNETPKSIPSPSSSSSSVSTTLFDLSQPPDLP 60

Query: 61  KLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120
           +LFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL
Sbjct: 61  QLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120

Query: 121 EKGDATREAAMAIQTSYSSHVAQDSISSLNE 152
           EKGDATREAAMAIQTSYSS +AQDSISSLNE
Sbjct: 121 EKGDATREAAMAIQTSYSSQIAQDSISSLNE 151

[Close]

BLAST of Csa6G040570 vs. NCBI nr
Match: gi|659089752|ref|XP_008445673.1| (PREDICTED: uncharacterized protein LOC103488633 isoform X2 [Cucumis melo])

HSP 1 Score: 292.4 bits (747), Expect = 4.7e-76
Identity = 145/151 (96.03%), Postives = 150/151 (99.34%), Query Frame = 1


Query: 1   MRGTGGPLLCIGDLLCDVGEDEAVEGKGLNETPRSIPSPSSSSSSVSTTIFDLSQPPDLP 60
           MRGTGGPLLCIGDLLCDVGE+EAVEGKGLNETP+SIPSPSSSSSSVSTT+FDLSQPPDLP
Sbjct: 1   MRGTGGPLLCIGDLLCDVGEEEAVEGKGLNETPKSIPSPSSSSSSVSTTLFDLSQPPDLP 60

Query: 61  KLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120
           +LFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL
Sbjct: 61  QLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120

Query: 121 EKGDATREAAMAIQTSYSSHVAQDSISSLNE 152
           EKGDATREAAMAIQTSYSS +AQDSISSLNE
Sbjct: 121 EKGDATREAAMAIQTSYSSQIAQDSISSLNE 151

The following BLAST results are available for this feature:

BLAST of Csa6G040570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K969_CUCSA	1.9e-79	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G040570 PE=4 SV=1	[more]
A0A061FGR1_THECC	1.8e-29	52.63	Histone-lysine N-methyltransferase SUV420H14-20, putative OS=Theobroma cacao GN=...	[more]
G7K8T8_MEDTR	6.8e-29	52.03	Uncharacterized protein OS=Medicago truncatula GN=MTR_5g058660 PE=4 SV=2	[more]
A0A067GLZ3_CITSI	6.8e-29	52.05	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031692mg PE=4 SV=1	[more]
V4T2M5_9ROSI	1.2e-28	52.05	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002759mg PE=4 SV=1	[more]

BLAST of Csa6G040570 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G08240.2	1.2e-29	47.06	unknown protein	[more]

BLAST of Csa6G040570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446209\|ref\|XP_004140864.1\|	2.7e-79	100.00	PREDICTED: uncharacterized protein LOC101219718 [Cucumis sativus]	[more]
gi\|659089754\|ref\|XP_008445675.1\|	9.6e-77	96.05	PREDICTED: uncharacterized protein LOC103488633 isoform X3 [Cucumis melo]	[more]
gi\|659089757\|ref\|XP_008445676.1\|	9.6e-77	96.05	PREDICTED: uncharacterized protein LOC103488633 isoform X4 [Cucumis melo]	[more]
gi\|659089759\|ref\|XP_008445677.1\|	4.7e-76	96.03	PREDICTED: uncharacterized protein LOC103488633 isoform X5 [Cucumis melo]	[more]
gi\|659089752\|ref\|XP_008445673.1\|	4.7e-76	96.03	PREDICTED: uncharacterized protein LOC103488633 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU085145	cucumber EST collection version 3.0	transcribed_cluster
CU121146	cucumber EST collection version 3.0	transcribed_cluster
CU123332	cucumber EST collection version 3.0	transcribed_cluster
CU151849	cucumber EST collection version 3.0	transcribed_cluster
CU159944	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G040570.1	Csa6G040570.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU159944	CU159944	transcribed_cluster
CU121146	CU121146	transcribed_cluster
CU151849	CU151849	transcribed_cluster
CU123332	CU123332	transcribed_cluster
CU085145	CU085145	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37237	FAMILY NOT NAMED	coord: 2..147 score: 2.9
None	No IPR available	PANTHER	PTHR37237:SF1	SUBFAMILY NOT NAMED	coord: 2..147 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G040570	Cla008011	Watermelon (97103) v1	cuwmB459
Csa6G040570	MELO3C011587	Melon (DHL92) v3.5.1	cumeB476
Csa6G040570	ClCG08G005410	Watermelon (Charleston Gray)	cuwcgB499
Csa6G040570	Lsi08G004130	Bottle gourd (USVL1VR-Ls)	culsiB472
Csa6G040570	MELO3C011587.2	Melon (DHL92) v3.6.1	cumedB455
Csa6G040570	Cla97C08G148250	Watermelon (97103) v2	cuwmbB491
Csa6G040570	Bhi04G001558	Wax gourd	cuwgoB578
Csa6G040570	CSPI06G03290	Wild cucumber (PI 183967)	cpicuB314
Csa6G040570	Cucsa.365260	Cucumber (Gy14) v1	cgycuB511
Csa6G040570	CmaCh04G023500	Cucurbita maxima (Rimu)	cmacuB766
Csa6G040570	CmoCh04G024590	Cucurbita moschata (Rifu)	cmocuB757
Csa6G040570	Cp4.1LG01g20340	Cucurbita pepo (Zucchini)	cpecuB458
Csa6G040570	Carg24452	Silver-seed gourd	carcuB0479

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G040570	Cucurbita maxima (Rimu)	cmacuB316
Csa6G040570	Cucurbita moschata (Rifu)	cmocuB304
Csa6G040570	Cucurbita pepo (Zucchini)	cpecuB196
Csa6G040570	Cucumber (Gy14) v2	cgybcuB282
Csa6G040570	Silver-seed gourd	carcuB0849