CmoCh04G024590 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G024590
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionHistone-lysine N-methyltransferase SUV420H14-20, putative
LocationCmo_Chr04 : 18187348 .. 18188422 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAGGCTCGGTCGGTGCAGTGGCCGAGCTCCAACCGAAGAGGGTTCAGTCGGAGGATTACGGTGTTTCTCCGCGATCAGATTTGCGTAAACAGATAGAGAGATGCGAGGAACTGGTGGACCTCTTCTCTGCATAGGCGATCTTCTGTGCGATGTCGGAGAAGAAGAAGCAGGAGAAGGAAAGGGATCTAATGAAACCCCTAAATCAGTAATATCATCAACTTCTTCCTCTGCTTCTGTTTCCACTCTTCCGCTCGTATCAGAAACCCCCGATCTCCCCAAACTCTTTCAGGTTCCCTGCTTATCTTTCGATTTTTGATTTTTCGCTTTCTTTTCTGGTTGTCCTGTAAGTCATTGAGTACTCTGATAATTGATGCTTCGATTACGGTTTCGTACGCTTTGAATGCAGATTATTGTATCGCGAATGTGATTTTTGAGGATTGCGAATATTTTGTAATGAGCTTGATGTTTATTTCATATTCTAATCTTCTTTTGCTTCAGGAAAATTACGACCAATTGAACAAATCATTCGATGATAATGACCACTCTTGGACAGCTTTGACGTTGAAGGTAGGGCGTTTCTTGTGTTTGACAATCAATTTGAATGATTCAGTGATATGAACTTTACTTTCTAACAATTTACAACCTCATTTCCTTTGATTTTGAAATACCGCTTCGTGTTTGTGCAAAGAAATTAGCATTATACTATCCAGCAAATTGGCTTCTATTTCCTTGTGACTTCATTTTTGGGGCATTTTCAGATGTGCAGTGCTCTTGATACTGCTAGTAAACTGGTTGAATCAACCAACTCAAATTCGAGATTTTTGTTGGAGAAGATTGTGGAGCTTGAACAGGTTTTGGAAAAGGGGGATTCTACAAGAGAGGCGGCCATGGCCATCCAAACCAGTTTTAGCTCTCAAGTTGCTCAGGACTCCATTTCTTCTCAGAGTCAAGGTTAGCATAAGCTTATACATTTAAGGGGTTTCTCATGTTTGTTGATGCATTATGGAAATCTTCTCTTGAGAAATACTCGTTTGAGCAGTTGCCATATTCATTGCTTTGATTCATGCAGTTTGA

mRNA sequence

CCAGGCTCGGTCGGTGCAGTGGCCGAGCTCCAACCGAAGAGGGTTCAGTCGGAGGATTACGGTGTTTCTCCGCGATCAGATTTGCGTAAACAGATAGAGAGATGCGAGGAACTGGTGGACCTCTTCTCTGCATAGGCGATCTTCTGTGCGATGTCGGAGAAGAAGAAGCAGGAGAAGGAAAGGGATCTAATGAAACCCCTAAATCAGTAATATCATCAACTTCTTCCTCTGCTTCTGTTTCCACTCTTCCGCTCGTATCAGAAACCCCCGATCTCCCCAAACTCTTTCAGGAAAATTACGACCAATTGAACAAATCATTCGATGATAATGACCACTCTTGGACAGCTTTGACGTTGAAGATGTGCAGTGCTCTTGATACTGCTAGTAAACTGGTTGAATCAACCAACTCAAATTCGAGATTTTTGTTGGAGAAGATTGTGGAGCTTGAACAGGTTTTGGAAAAGGGGGATTCTACAAGAGAGGCGGCCATGGCCATCCAAACCAGTTTTAGCTCTCAAGTTGCTCAGGACTCCATTTCTTCTCAGAGTCAAGTTGCCATATTCATTGCTTTGATTCATGCAGTTTGA

Coding sequence (CDS)

ATGCGAGGAACTGGTGGACCTCTTCTCTGCATAGGCGATCTTCTGTGCGATGTCGGAGAAGAAGAAGCAGGAGAAGGAAAGGGATCTAATGAAACCCCTAAATCAGTAATATCATCAACTTCTTCCTCTGCTTCTGTTTCCACTCTTCCGCTCGTATCAGAAACCCCCGATCTCCCCAAACTCTTTCAGGAAAATTACGACCAATTGAACAAATCATTCGATGATAATGACCACTCTTGGACAGCTTTGACGTTGAAGATGTGCAGTGCTCTTGATACTGCTAGTAAACTGGTTGAATCAACCAACTCAAATTCGAGATTTTTGTTGGAGAAGATTGTGGAGCTTGAACAGGTTTTGGAAAAGGGGGATTCTACAAGAGAGGCGGCCATGGCCATCCAAACCAGTTTTAGCTCTCAAGTTGCTCAGGACTCCATTTCTTCTCAGAGTCAAGTTGCCATATTCATTGCTTTGATTCATGCAGTTTGA
BLAST of CmoCh04G024590 vs. TrEMBL
Match: A0A0A0K969_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G040570 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.7e-59
Identity = 126/151 (83.44%), Postives = 138/151 (91.39%), Query Frame = 1

Query: 1   MRGTGGPLLCIGDLLCDVGEEEAGEGKGSNETPKSVISSTSSSASVSTLPL-VSETPDLP 60
           MRGTGGPLLCIGDLLCDVGE+EA EGKG NETP+S+ S +SSS+SVST    +S+ PDLP
Sbjct: 1   MRGTGGPLLCIGDLLCDVGEDEAVEGKGLNETPRSIPSPSSSSSSVSTTIFDLSQPPDLP 60

Query: 61  KLFQENYDQLNKSFDDNDHSWTALTLKMCSALDTASKLVESTNSNSRFLLEKIVELEQVL 120
           KLFQENYDQLNK FDDNDHSWTALTLKMCSALDTA+KLVESTNSNSRFLLEKIVELE VL
Sbjct: 61  KLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120

Query: 121 EKGDSTREAAMAIQTSFSSQVAQDSISSQSQ 151
           EKGD+TREAAMAIQTS+SS VAQDSISS ++
Sbjct: 121 EKGDATREAAMAIQTSYSSHVAQDSISSLNE 151

BLAST of CmoCh04G024590 vs. TrEMBL
Match: A0A067GLZ3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031692mg PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.3e-27
Identity = 76/148 (51.35%), Postives = 96/148 (64.86%), Query Frame = 1

Query: 1   MRGTGGPLLCIGDLLCDVGEEEAGEGKGSNETPKSVISSTSSSASVSTLPLVSETPDLPK 60
           MRG GGPLL IGDLL DVG E       S+ +  S +   S+S   S         DL K
Sbjct: 13  MRGIGGPLLTIGDLLSDVGGETVTASDSSHSSSPSSLVQDSNSTPHSL--------DLTK 72

Query: 61  LFQENYDQLNKSFDDNDHSWTALTLKMCSALDTASKLVESTNSNSRFLLEKIVELEQVLE 120
           LFQENYDQLNK+F  +DHSWTALTLK+C+AL+TA+KLV+STN+N   L EK++ELE+V++
Sbjct: 73  LFQENYDQLNKAFSGSDHSWTALTLKLCTALETANKLVQSTNTNVTLLSEKVLELERVVQ 132

Query: 121 KGDSTREAAMAIQTSFSSQVAQDSISSQ 149
           + DS   AA AI  S + +  Q   S Q
Sbjct: 133 REDSATSAAKAINVSLNRKQGQSIGSDQ 152

BLAST of CmoCh04G024590 vs. TrEMBL
Match: G7K8T8_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_5g058660 PE=4 SV=2)

HSP 1 Score: 129.8 bits (325), Expect = 3.0e-27
Identity = 79/147 (53.74%), Postives = 99/147 (67.35%), Query Frame = 1

Query: 1   MRGTGGPLLCIGDLLCDVGEEEAGEGKGSNETPKSVISSTSSSASVSTLPLVSETPDLPK 60
           MRG GGPLLCIGDLL DVGEE   EG          I  TS S+S+S L   +  P L K
Sbjct: 1   MRGIGGPLLCIGDLLTDVGEENEQEG----------IEKTSPSSSLSDLNN-NALPHLTK 60

Query: 61  LFQENYDQLNKSFDDNDHSWTALTLKMCSALDTASKLVESTNSNSRFLLEKIVELEQVLE 120
           LFQENYD LN + +  DHSWT+LTLK+C++LDTA+KLV+STNSN   LLEK+ ELE++++
Sbjct: 61  LFQENYDHLNSALNATDHSWTSLTLKLCTSLDTANKLVQSTNSNVASLLEKVEELEKIVK 120

Query: 121 KGDSTREAAMAIQTSFSSQVAQDSISS 148
           +GDS      AI  + +  VA D+ SS
Sbjct: 121 RGDS------AIAATKAFYVAPDNNSS 130

BLAST of CmoCh04G024590 vs. TrEMBL
Match: E0CR94_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03330 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.9e-27
Identity = 74/139 (53.24%), Postives = 93/139 (66.91%), Query Frame = 1

Query: 1   MRGTGGPLLCIGDLLCDVGEEEAGEGKGSNETPKSVISSTSSSASVSTLPLVSETPDLPK 60
           MRG GGPLLCIGDLL DVGE +    + S  +P       SSS S+   P   +   L +
Sbjct: 1   MRGIGGPLLCIGDLLTDVGEADPHSDQPSPLSP-------SSSPSMPFSPHTLQPSHLNR 60

Query: 61  LFQENYDQLNKSFDDNDHSWTALTLKMCSALDTASKLVESTNSNSRFLLEKIVELEQVLE 120
           LFQENYDQLNK+F   DHSWTALTLK+C+AL TA+ LV+STN+N   L EK+ ELE+V++
Sbjct: 61  LFQENYDQLNKAFAGTDHSWTALTLKLCTALQTANTLVQSTNTNVELLSEKVGELERVVK 120

Query: 121 KGDSTREAAMAIQTSFSSQ 140
           +GDS   AA AI  S + +
Sbjct: 121 RGDSAVAAAKAIHISLNQK 132

BLAST of CmoCh04G024590 vs. TrEMBL
Match: V4T2M5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002759mg PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.9e-27
Identity = 76/148 (51.35%), Postives = 96/148 (64.86%), Query Frame = 1

Query: 1   MRGTGGPLLCIGDLLCDVGEEEAGEGKGSNETPKSVISSTSSSASVSTLPLVSETPDLPK 60
           MRG GGPLL IGDLL DVG E       S+ +  S +   S+S   S         DL K
Sbjct: 13  MRGIGGPLLTIGDLLSDVGGETVTASDSSHSSSPSSLVQDSNSTPHSL--------DLTK 72

Query: 61  LFQENYDQLNKSFDDNDHSWTALTLKMCSALDTASKLVESTNSNSRFLLEKIVELEQVLE 120
           LFQENYDQLNK+F  +DHSWTALTLK+C+AL+TA+KLV+STN+N   L EK++ELE+V++
Sbjct: 73  LFQENYDQLNKAFSGSDHSWTALTLKLCTALETANKLVQSTNTNVTLLSEKVLELERVVK 132

Query: 121 KGDSTREAAMAIQTSFSSQVAQDSISSQ 149
           + DS   AA AI  S + +  Q   S Q
Sbjct: 133 REDSATAAAKAINVSLNRKQGQSIGSDQ 152

BLAST of CmoCh04G024590 vs. TAIR10
Match: AT4G08240.2 (AT4G08240.2 unknown protein)

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-27
Identity = 65/139 (46.76%), Postives = 93/139 (66.91%), Query Frame = 1

Query: 1   MRGTGGPLLCIGDLLCDVGEEEAGEGKGSNETPKSVISSTSSSASVSTLPLVSETPDLPK 60
           MRG GGPLL IGDLL D+G+E    G      P   +SS S S    + PL     DL +
Sbjct: 1   MRGVGGPLLSIGDLLADLGDET---GHSPQNHPNPEVSSKSYSDDTISGPL-----DLTR 60

Query: 61  LFQENYDQLNKSFDDNDHSWTALTLKMCSALDTASKLVESTNSNSRFLLEKIVELEQVLE 120
           LFQENYD+LN +F  +DHSWT+LTL++C++L+TA+KLV +T +N+R L EK+ ELE++++
Sbjct: 61  LFQENYDKLNDAFAGSDHSWTSLTLELCTSLETANKLVHATTTNARLLSEKVEELEKIVK 120

Query: 121 KGDSTREAAMAIQTSFSSQ 140
           +GDS   AA  +  + + +
Sbjct: 121 RGDSAVAAARTVHATVNQK 131

BLAST of CmoCh04G024590 vs. NCBI nr
Match: gi|659089752|ref|XP_008445673.1| (PREDICTED: uncharacterized protein LOC103488633 isoform X2 [Cucumis melo])

HSP 1 Score: 240.4 bits (612), Expect = 2.3e-60
Identity = 128/152 (84.21%), Postives = 140/152 (92.11%), Query Frame = 1

Query: 1   MRGTGGPLLCIGDLLCDVGEEEAGEGKGSNETPKSVISSTSSSASVSTLPL-VSETPDLP 60
           MRGTGGPLLCIGDLLCDVGEEEA EGKG NETPKS+ S +SSS+SVST    +S+ PDLP
Sbjct: 1   MRGTGGPLLCIGDLLCDVGEEEAVEGKGLNETPKSIPSPSSSSSSVSTTLFDLSQPPDLP 60

Query: 61  KLFQENYDQLNKSFDDNDHSWTALTLKMCSALDTASKLVESTNSNSRFLLEKIVELEQVL 120
           +LFQENYDQLNK FDDNDHSWTALTLKMCSALDTA+KLVESTNSNSRFLLEKIVELE VL
Sbjct: 61  QLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120

Query: 121 EKGDSTREAAMAIQTSFSSQVAQDSISSQSQV 152
           EKGD+TREAAMAIQTS+SSQ+AQDSISS ++V
Sbjct: 121 EKGDATREAAMAIQTSYSSQIAQDSISSLNEV 152

BLAST of CmoCh04G024590 vs. NCBI nr
Match: gi|659089759|ref|XP_008445677.1| (PREDICTED: uncharacterized protein LOC103488633 isoform X5 [Cucumis melo])

HSP 1 Score: 240.4 bits (612), Expect = 2.3e-60
Identity = 128/152 (84.21%), Postives = 140/152 (92.11%), Query Frame = 1

Query: 1   MRGTGGPLLCIGDLLCDVGEEEAGEGKGSNETPKSVISSTSSSASVSTLPL-VSETPDLP 60
           MRGTGGPLLCIGDLLCDVGEEEA EGKG NETPKS+ S +SSS+SVST    +S+ PDLP
Sbjct: 1   MRGTGGPLLCIGDLLCDVGEEEAVEGKGLNETPKSIPSPSSSSSSVSTTLFDLSQPPDLP 60

Query: 61  KLFQENYDQLNKSFDDNDHSWTALTLKMCSALDTASKLVESTNSNSRFLLEKIVELEQVL 120
           +LFQENYDQLNK FDDNDHSWTALTLKMCSALDTA+KLVESTNSNSRFLLEKIVELE VL
Sbjct: 61  QLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120

Query: 121 EKGDSTREAAMAIQTSFSSQVAQDSISSQSQV 152
           EKGD+TREAAMAIQTS+SSQ+AQDSISS ++V
Sbjct: 121 EKGDATREAAMAIQTSYSSQIAQDSISSLNEV 152

BLAST of CmoCh04G024590 vs. NCBI nr
Match: gi|659089750|ref|XP_008445672.1| (PREDICTED: uncharacterized protein LOC103488633 isoform X1 [Cucumis melo])

HSP 1 Score: 239.2 bits (609), Expect = 5.0e-60
Identity = 127/151 (84.11%), Postives = 139/151 (92.05%), Query Frame = 1

Query: 1   MRGTGGPLLCIGDLLCDVGEEEAGEGKGSNETPKSVISSTSSSASVSTLPL-VSETPDLP 60
           MRGTGGPLLCIGDLLCDVGEEEA EGKG NETPKS+ S +SSS+SVST    +S+ PDLP
Sbjct: 1   MRGTGGPLLCIGDLLCDVGEEEAVEGKGLNETPKSIPSPSSSSSSVSTTLFDLSQPPDLP 60

Query: 61  KLFQENYDQLNKSFDDNDHSWTALTLKMCSALDTASKLVESTNSNSRFLLEKIVELEQVL 120
           +LFQENYDQLNK FDDNDHSWTALTLKMCSALDTA+KLVESTNSNSRFLLEKIVELE VL
Sbjct: 61  QLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120

Query: 121 EKGDSTREAAMAIQTSFSSQVAQDSISSQSQ 151
           EKGD+TREAAMAIQTS+SSQ+AQDSISS ++
Sbjct: 121 EKGDATREAAMAIQTSYSSQIAQDSISSLNE 151

BLAST of CmoCh04G024590 vs. NCBI nr
Match: gi|659089754|ref|XP_008445675.1| (PREDICTED: uncharacterized protein LOC103488633 isoform X3 [Cucumis melo])

HSP 1 Score: 239.2 bits (609), Expect = 5.0e-60
Identity = 127/151 (84.11%), Postives = 139/151 (92.05%), Query Frame = 1

Query: 1   MRGTGGPLLCIGDLLCDVGEEEAGEGKGSNETPKSVISSTSSSASVSTLPL-VSETPDLP 60
           MRGTGGPLLCIGDLLCDVGEEEA EGKG NETPKS+ S +SSS+SVST    +S+ PDLP
Sbjct: 1   MRGTGGPLLCIGDLLCDVGEEEAVEGKGLNETPKSIPSPSSSSSSVSTTLFDLSQPPDLP 60

Query: 61  KLFQENYDQLNKSFDDNDHSWTALTLKMCSALDTASKLVESTNSNSRFLLEKIVELEQVL 120
           +LFQENYDQLNK FDDNDHSWTALTLKMCSALDTA+KLVESTNSNSRFLLEKIVELE VL
Sbjct: 61  QLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120

Query: 121 EKGDSTREAAMAIQTSFSSQVAQDSISSQSQ 151
           EKGD+TREAAMAIQTS+SSQ+AQDSISS ++
Sbjct: 121 EKGDATREAAMAIQTSYSSQIAQDSISSLNE 151

BLAST of CmoCh04G024590 vs. NCBI nr
Match: gi|659089757|ref|XP_008445676.1| (PREDICTED: uncharacterized protein LOC103488633 isoform X4 [Cucumis melo])

HSP 1 Score: 239.2 bits (609), Expect = 5.0e-60
Identity = 127/151 (84.11%), Postives = 139/151 (92.05%), Query Frame = 1

Query: 1   MRGTGGPLLCIGDLLCDVGEEEAGEGKGSNETPKSVISSTSSSASVSTLPL-VSETPDLP 60
           MRGTGGPLLCIGDLLCDVGEEEA EGKG NETPKS+ S +SSS+SVST    +S+ PDLP
Sbjct: 1   MRGTGGPLLCIGDLLCDVGEEEAVEGKGLNETPKSIPSPSSSSSSVSTTLFDLSQPPDLP 60

Query: 61  KLFQENYDQLNKSFDDNDHSWTALTLKMCSALDTASKLVESTNSNSRFLLEKIVELEQVL 120
           +LFQENYDQLNK FDDNDHSWTALTLKMCSALDTA+KLVESTNSNSRFLLEKIVELE VL
Sbjct: 61  QLFQENYDQLNKVFDDNDHSWTALTLKMCSALDTATKLVESTNSNSRFLLEKIVELEHVL 120

Query: 121 EKGDSTREAAMAIQTSFSSQVAQDSISSQSQ 151
           EKGD+TREAAMAIQTS+SSQ+AQDSISS ++
Sbjct: 121 EKGDATREAAMAIQTSYSSQIAQDSISSLNE 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K969_CUCSA1.7e-5983.44Uncharacterized protein OS=Cucumis sativus GN=Csa_6G040570 PE=4 SV=1[more]
A0A067GLZ3_CITSI2.3e-2751.35Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031692mg PE=4 SV=1[more]
G7K8T8_MEDTR3.0e-2753.74Uncharacterized protein OS=Medicago truncatula GN=MTR_5g058660 PE=4 SV=2[more]
E0CR94_VITVI3.9e-2753.24Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03330 PE=4 SV=... [more]
V4T2M5_9ROSI3.9e-2751.35Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002759mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G08240.22.0e-2746.76 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659089752|ref|XP_008445673.1|2.3e-6084.21PREDICTED: uncharacterized protein LOC103488633 isoform X2 [Cucumis melo][more]
gi|659089759|ref|XP_008445677.1|2.3e-6084.21PREDICTED: uncharacterized protein LOC103488633 isoform X5 [Cucumis melo][more]
gi|659089750|ref|XP_008445672.1|5.0e-6084.11PREDICTED: uncharacterized protein LOC103488633 isoform X1 [Cucumis melo][more]
gi|659089754|ref|XP_008445675.1|5.0e-6084.11PREDICTED: uncharacterized protein LOC103488633 isoform X3 [Cucumis melo][more]
gi|659089757|ref|XP_008445676.1|5.0e-6084.11PREDICTED: uncharacterized protein LOC103488633 isoform X4 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G024590.1CmoCh04G024590.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37237FAMILY NOT NAMEDcoord: 2..146
score: 2.7

The following gene(s) are paralogous to this gene:

None