Csa6G020170 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G020170
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 2152921 .. 2153475 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGATGATGATGATGTTCATGATCACTGTCCTTTCTTTTTGTCCATCTTCAAATTGGTCTTCCAAATTACCATGGCATTTTATAGGTTTCTAGGTTTCTGTGTTCCCAGTTCGACTCTGCCATCATCGGAAGATTCTTACCCCGTTGACCCACATCCGCCTCCGAAAACGGATGACCCACCGATTGAAAATTCGGTATGCTTTCTCTCTTTTACTTGAAAGGGTAAATTATATTTTTGGTACATAAAGTTTGGGTTTTATGTTCAGTAGTGTCTTTAGGTACATAACTGCATTTTTAAACTATATAAACTCTAATAAGTATCAATAAAAAAAATCTACAAATAATCCTTTGTTAAAAATTTCTCGACCTGTTATAACTTACGAAAGAAATGAACAAATATTGCATAATAAAAATGAGACACTAAGTTACTACGTGGGGGATGTTTCTTGGATTTGTTGGCTTTACAGGGGGAGGAAGAACGTGAGTTTGCTAGACGGAATCCGCCGCCGCCACCGCCGCCTAGCAATGGCGGTGGCGGTCGAACGAACTGA

mRNA sequence

ATGAATGATGATGATGATGTTCATGATCACTGTCCTTTCTTTTTGTCCATCTTCAAATTGGTCTTCCAAATTACCATGGCATTTTATAGGTTTCTAGGTTTCTGTGTTCCCAGTTCGACTCTGCCATCATCGGAAGATTCTTACCCCGTTGACCCACATCCGCCTCCGAAAACGGATGACCCACCGATTGAAAATTCGGGGGAGGAAGAACGTGAGTTTGCTAGACGGAATCCGCCGCCGCCACCGCCGCCTAGCAATGGCGGTGGCGGTCGAACGAACTGA

Coding sequence (CDS)

ATGAATGATGATGATGATGTTCATGATCACTGTCCTTTCTTTTTGTCCATCTTCAAATTGGTCTTCCAAATTACCATGGCATTTTATAGGTTTCTAGGTTTCTGTGTTCCCAGTTCGACTCTGCCATCATCGGAAGATTCTTACCCCGTTGACCCACATCCGCCTCCGAAAACGGATGACCCACCGATTGAAAATTCGGGGGAGGAAGAACGTGAGTTTGCTAGACGGAATCCGCCGCCGCCACCGCCGCCTAGCAATGGCGGTGGCGGTCGAACGAACTGA

Protein sequence

MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDDPPIENSGEEEREFARRNPPPPPPPSNGGGGRTN*

Homology

[Close]

BLAST of Csa6G020170 vs. TrEMBL
Match: A0A0A0K8Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020170 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 6.6e-51
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDD 60
          MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDD
Sbjct: 1  MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDD 60

Query: 61 PPIENSGEEEREFARRNPPPPPPPSNGGGGRTN 94
          PPIENSGEEEREFARRNPPPPPPPSNGGGGRTN
Sbjct: 61 PPIENSGEEEREFARRNPPPPPPPSNGGGGRTN 93

[Close]

BLAST of Csa6G020170 vs. NCBI nr
Match: gi|700190699|gb|KGN45903.1| (hypothetical protein Csa_6G020170 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 9.4e-51
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDD 60
          MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDD
Sbjct: 1  MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDD 60

Query: 61 PPIENSGEEEREFARRNPPPPPPPSNGGGGRTN 94
          PPIENSGEEEREFARRNPPPPPPPSNGGGGRTN
Sbjct: 61 PPIENSGEEEREFARRNPPPPPPPSNGGGGRTN 93

[Close]

BLAST of Csa6G020170 vs. NCBI nr
Match: gi|659128738|ref|XP_008464347.1| (PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 2.7e-37
Identity = 76/91 (83.52%), Postives = 78/91 (85.71%), Query Frame = 1


Query: 3   DDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDDPP 62
           +DD VHDHCPFFLSIF LVFQITMAFYRFLGF V    L SSEDSYPVD  PPP T DPP
Sbjct: 25  NDDVVHDHCPFFLSIFNLVFQITMAFYRFLGFRVHRPILSSSEDSYPVDSQPPPTTVDPP 84

Query: 63  IENSGEEEREFARRNPPPPPPPSNGGGGRTN 94
           IE+ GEEEREFARRNPPPPPPPSNGGGGRTN
Sbjct: 85  IEDPGEEEREFARRNPPPPPPPSNGGGGRTN 115

The following BLAST results are available for this feature:

BLAST of Csa6G020170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8Z6_CUCSA	6.6e-51	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020170 PE=4 SV=1	[more]

BLAST of Csa6G020170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190699\|gb\|KGN45903.1\|	9.4e-51	100.00	hypothetical protein Csa_6G020170 [Cucumis sativus]	[more]
gi\|659128738\|ref\|XP_008464347.1\|	2.7e-37	83.52	PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G020170.1	Csa6G020170.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G020170	Cla002459	Watermelon (97103) v1	cuwmB463
Csa6G020170	CsGy6G002810	Cucumber (Gy14) v2	cgybcuB282

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G020170	Melon (DHL92) v3.5.1	cumeB418
Csa6G020170	Watermelon (Charleston Gray)	cuwcgB500
Csa6G020170	Watermelon (Charleston Gray)	cuwcgB513
Csa6G020170	Watermelon (97103) v1	cuwmB462
Csa6G020170	Watermelon (97103) v1	cuwmB475
Csa6G020170	Bottle gourd (USVL1VR-Ls)	culsiB471
Csa6G020170	Melon (DHL92) v3.6.1	cumedB455
Csa6G020170	Watermelon (97103) v2	cuwmbB490
Csa6G020170	Watermelon (97103) v2	cuwmbB504
Csa6G020170	Wax gourd	cuwgoB589
Csa6G020170	Cucumber (Gy14) v1	cgycuB511