Csa6G020170.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G020170.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 2152921 .. 2153475 (+)
Sequence length282
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGATGATGATGATGTTCATGATCACTGTCCTTTCTTTTTGTCCATCTTCAAATTGGTCTTCCAAATTACCATGGCATTTTATAGGTTTCTAGGTTTCTGTGTTCCCAGTTCGACTCTGCCATCATCGGAAGATTCTTACCCCGTTGACCCACATCCGCCTCCGAAAACGGATGACCCACCGATTGAAAATTCGGTATGCTTTCTCTCTTTTACTTGAAAGGGTAAATTATATTTTTGGTACATAAAGTTTGGGTTTTATGTTCAGTAGTGTCTTTAGGTACATAACTGCATTTTTAAACTATATAAACTCTAATAAGTATCAATAAAAAAAATCTACAAATAATCCTTTGTTAAAAATTTCTCGACCTGTTATAACTTACGAAAGAAATGAACAAATATTGCATAATAAAAATGAGACACTAAGTTACTACGTGGGGGATGTTTCTTGGATTTGTTGGCTTTACAGGGGGAGGAAGAACGTGAGTTTGCTAGACGGAATCCGCCGCCGCCACCGCCGCCTAGCAATGGCGGTGGCGGTCGAACGAACTGA

mRNA sequence

ATGAATGATGATGATGATGTTCATGATCACTGTCCTTTCTTTTTGTCCATCTTCAAATTGGTCTTCCAAATTACCATGGCATTTTATAGGTTTCTAGGTTTCTGTGTTCCCAGTTCGACTCTGCCATCATCGGAAGATTCTTACCCCGTTGACCCACATCCGCCTCCGAAAACGGATGACCCACCGATTGAAAATTCGGGGGAGGAAGAACGTGAGTTTGCTAGACGGAATCCGCCGCCGCCACCGCCGCCTAGCAATGGCGGTGGCGGTCGAACGAACTGA

Coding sequence (CDS)

ATGAATGATGATGATGATGTTCATGATCACTGTCCTTTCTTTTTGTCCATCTTCAAATTGGTCTTCCAAATTACCATGGCATTTTATAGGTTTCTAGGTTTCTGTGTTCCCAGTTCGACTCTGCCATCATCGGAAGATTCTTACCCCGTTGACCCACATCCGCCTCCGAAAACGGATGACCCACCGATTGAAAATTCGGGGGAGGAAGAACGTGAGTTTGCTAGACGGAATCCGCCGCCGCCACCGCCGCCTAGCAATGGCGGTGGCGGTCGAACGAACTGA

Protein sequence

MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDDPPIENSGEEEREFARRNPPPPPPPSNGGGGRTN*
Homology
[Close]
BLAST of Csa6G020170.1 vs. TrEMBL
Match: A0A0A0K8Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020170 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 6.6e-51
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDD 60
          MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDD
Sbjct: 1  MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDD 60

Query: 61 PPIENSGEEEREFARRNPPPPPPPSNGGGGRTN 94
          PPIENSGEEEREFARRNPPPPPPPSNGGGGRTN
Sbjct: 61 PPIENSGEEEREFARRNPPPPPPPSNGGGGRTN 93

[Close]
BLAST of Csa6G020170.1 vs. NCBI nr
Match: gi|700190699|gb|KGN45903.1| (hypothetical protein Csa_6G020170 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 9.4e-51
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDD 60
          MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDD
Sbjct: 1  MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDD 60

Query: 61 PPIENSGEEEREFARRNPPPPPPPSNGGGGRTN 94
          PPIENSGEEEREFARRNPPPPPPPSNGGGGRTN
Sbjct: 61 PPIENSGEEEREFARRNPPPPPPPSNGGGGRTN 93

[Close]
BLAST of Csa6G020170.1 vs. NCBI nr
Match: gi|659128738|ref|XP_008464347.1| (PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 2.7e-37
Identity = 76/91 (83.52%), Postives = 78/91 (85.71%), Query Frame = 1 

Query: 3   DDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDDPP 62
           +DD VHDHCPFFLSIF LVFQITMAFYRFLGF V    L SSEDSYPVD  PPP T DPP
Sbjct: 25  NDDVVHDHCPFFLSIFNLVFQITMAFYRFLGFRVHRPILSSSEDSYPVDSQPPPTTVDPP 84

Query: 63  IENSGEEEREFARRNPPPPPPPSNGGGGRTN 94
           IE+ GEEEREFARRNPPPPPPPSNGGGGRTN
Sbjct: 85  IEDPGEEEREFARRNPPPPPPPSNGGGGRTN 115

The following BLAST results are available for this feature:
BLAST of Csa6G020170.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8Z6_CUCSA6.6e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020170 PE=4 SV=1[more]
BLAST of Csa6G020170.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190699|gb|KGN45903.1|9.4e-51100.00hypothetical protein Csa_6G020170 [Cucumis sativus][more]
gi|659128738|ref|XP_008464347.1|2.7e-3783.52PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G020170Csa6G020170gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G020170.1Csa6G020170.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G020170.1.cds1Csa6G020170.1.cds1CDS
Csa6G020170.1.cds2Csa6G020170.1.cds2CDS