CsGy6G002810 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G002810
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr6 : 2170989 .. 2171865 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACACACATATTATTTCAAAACTTCTTCTTATTAGAGATGAAGAGAGGTTCAATGCTTTCGAAAAATATAGAAAAAATAGAGAATTCAAATGAAAACACCAAGAAGATGAATGATGATGATGATGTTCATGATCACTGTCCTTTCTTTTTGTCCATCTTCAAATTGGTCTTCCAAATTACCATGGCATTTTATAGGTTTCTAGGTTTCTGTGTTCCCAGTTCGACTCTGCCATCATCGGAAGATTCTTACCCCGTTGACCCACATCCGCCTCCGAAAACGGATGACCCACCGATTGAAAATTCGGTATGCTTTCTCTCTTTTACTTGAAAGGGTAAATTATATTTTTGGTACATAAAGTTTGGGTTTTATGTTCAGTAGTGTCTTTAGGTACATAACTGCATTTTTAAACTATATAAACTCTAATAAGTATCAATAAAAAAAATCTACAAATAATCCTTTGTTAAAAATTTCTCGACCTGTTATAACTTACGAAAGAAATGAACAAATATTGCATAATAAAAATGAGACACTAAGTTACTACGTGGGGGATGTTTCTTGGATTTGTTGGCTTTACAGGGGGAGGAAGAACGTGAGTTTGCTAGACGGAATCCGCCGCCGCCACCGCCGCCTAGCAATGGCGGTGGCGGTCGAACGAACTGATCACCAGGTGGCGGTGTTTTGTGGTCTAATATGGACGTCCGGTCGACAGCCACTTACAATGATCATGAATTAATGTACAAATATTTTTATCATATGAATAAATGTATTAACTTAATGAAGTTATTTTTCTTAGAGCTAAGCACTAAAAAAATAGAGAGATCTGATATGTAGTTGTTTAAAATTTCATGTTTATTCTATTTTAATTTATACATTCT

mRNA sequence

CGACACACATATTATTTCAAAACTTCTTCTTATTAGAGATGAAGAGAGGTTCAATGCTTTCGAAAAATATAGAAAAAATAGAGAATTCAAATGAAAACACCAAGAAGATGAATGATGATGATGATGTTCATGATCACTGTCCTTTCTTTTTGTCCATCTTCAAATTGGTCTTCCAAATTACCATGGCATTTTATAGGTTTCTAGGTTTCTGTGTTCCCAGTTCGACTCTGCCATCATCGGAAGATTCTTACCCCGTTGACCCACATCCGCCTCCGAAAACGGATGACCCACCGATTGAAAATTCGGGGGAGGAAGAACGTGAGTTTGCTAGACGGAATCCGCCGCCGCCACCGCCGCCTAGCAATGGCGGTGGCGGTCGAACGAACTGATCACCAGGTGGCGGTGTTTTGTGGTCTAATATGGACGTCCGGTCGACAGCCACTTACAATGATCATGAATTAATGTACAAATATTTTTATCATATGAATAAATGTATTAACTTAATGAAGTTATTTTTCTTAGAGCTAAGCACTAAAAAAATAGAGAGATCTGATATGTAGTTGTTTAAAATTTCATGTTTATTCTATTTTAATTTATACATTCT

Coding sequence (CDS)

ATGAAGAGAGGTTCAATGCTTTCGAAAAATATAGAAAAAATAGAGAATTCAAATGAAAACACCAAGAAGATGAATGATGATGATGATGTTCATGATCACTGTCCTTTCTTTTTGTCCATCTTCAAATTGGTCTTCCAAATTACCATGGCATTTTATAGGTTTCTAGGTTTCTGTGTTCCCAGTTCGACTCTGCCATCATCGGAAGATTCTTACCCCGTTGACCCACATCCGCCTCCGAAAACGGATGACCCACCGATTGAAAATTCGGGGGAGGAAGAACGTGAGTTTGCTAGACGGAATCCGCCGCCGCCACCGCCGCCTAGCAATGGCGGTGGCGGTCGAACGAACTGA

Protein sequence

MKRGSMLSKNIEKIENSNENTKKMNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDDPPIENSGEEEREFARRNPPPPPPPSNGGGGRTN

Homology

[Close]

BLAST of CsGy6G002810 vs. NCBI nr
Match: KGN45903.1 (hypothetical protein Csa_6G020170 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 6.9e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 24 MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPH 77
          MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPH
Sbjct: 1  MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPH 53

[Close]

BLAST of CsGy6G002810 vs. NCBI nr
Match: XP_008464347.1 (PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 5.8e-22
Identity = 60/74 (81.08%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MKRGSMLSKNIEKIENSNENTKKMNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVP 60
          MKRGS L KNIE+IENSNENTK++N DD VHDHCPFFLSIF LVFQITMAFYRFLGF V 
Sbjct: 1  MKRGSKLLKNIEEIENSNENTKELN-DDVVHDHCPFFLSIFNLVFQITMAFYRFLGFRVH 60

Query: 61 SSTLPSSEDSYPVD 75
             L SSEDSYPVD
Sbjct: 61 RPILSSSEDSYPVD 73

[Close]

BLAST of CsGy6G002810 vs. TrEMBL
Match: tr|A0A0A0K8Z6|A0A0A0K8Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020170 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.5e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 24 MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPH 77
          MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPH
Sbjct: 1  MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPH 53

[Close]

BLAST of CsGy6G002810 vs. TrEMBL
Match: tr|A0A1S3CMT1|A0A1S3CMT1_CUCME (uncharacterized protein LOC103502255 OS=Cucumis melo OX=3656 GN=LOC103502255 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.8e-22
Identity = 60/74 (81.08%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MKRGSMLSKNIEKIENSNENTKKMNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVP 60
          MKRGS L KNIE+IENSNENTK++N DD VHDHCPFFLSIF LVFQITMAFYRFLGF V 
Sbjct: 1  MKRGSKLLKNIEEIENSNENTKELN-DDVVHDHCPFFLSIFNLVFQITMAFYRFLGFRVH 60

Query: 61 SSTLPSSEDSYPVD 75
             L SSEDSYPVD
Sbjct: 61 RPILSSSEDSYPVD 73

The following BLAST results are available for this feature:

BLAST of CsGy6G002810 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45903.1	6.9e-23	100.00	hypothetical protein Csa_6G020170 [Cucumis sativus]	[more]
XP_008464347.1	5.8e-22	81.08	PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo]	[more]

BLAST of CsGy6G002810 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy6G002810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G002810 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K8Z6\|A0A0A0K8Z6_CUCSA	4.5e-23	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020170 PE=4 SV=1	[more]
tr\|A0A1S3CMT1\|A0A1S3CMT1_CUCME	3.8e-22	81.08	uncharacterized protein LOC103502255 OS=Cucumis melo OX=3656 GN=LOC103502255 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G002810.1	CsGy6G002810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..99

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G002810	Cla002459	Watermelon (97103) v1	cgybwmB436
CsGy6G002810	Csa6G020170	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G002810	ClCG08G002900	Watermelon (Charleston Gray)	cgybwcgB457
CsGy6G002810	Cla97C08G146760	Watermelon (97103) v2	cgybwmbB480

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G002810	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G002810	Watermelon (97103) v2	cgybwmbB466
CsGy6G002810	Wax gourd	cgybwgoB561
CsGy6G002810	Bottle gourd (USVL1VR-Ls)	cgyblsiB438
CsGy6G002810	Melon (DHL92) v3.5.1	cgybmeB409
CsGy6G002810	Melon (DHL92) v3.5.1	cgybmeB421
CsGy6G002810	Melon (DHL92) v3.6.1	cgybmedB413
CsGy6G002810	Watermelon (Charleston Gray)	cgybwcgB472
CsGy6G002810	Watermelon (97103) v1	cgybwmB434
CsGy6G002810	Watermelon (97103) v1	cgybwmB446
CsGy6G002810	Watermelon (97103) v1	cgybwmB447
CsGy6G002810	Wild cucumber (PI 183967)	cgybcpiB288