Csa6G014610 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G014610
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionTranscription elongation factor s-II, putative; contains IPR003618 (Transcription elongation factor S-II, central domain), IPR016492 (Transcription elongation factor, TFIIS-related), IPR017923 (Transcription factor IIS, N-terminal)
LocationChr6 : 1626689 .. 1628240 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATGAGCTGGTGGAATTGTTTGAAGCGGCGAAGAAGGCTGCAGATGCCGCTGCAGCACCATCAAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTTGATGCCCTAAGGCAGCTCAAGAAATTCCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTTTTCTTCTCATTAGACTTGAGATTTGTTTCTTTTGTTGATGGTGGGGGGACAGTGAGAATGTAATTAGCAAGTTTATGAAATTATGCATGGTTTTTATTATGAATTTAGCTTAAATTCATCGTCTGCTTGCTTACGAATTGGTTTCATAACGAATTGAGTTCACTCGATTTCATACGTTGTTTATGTCGTTCACGTTCACGTAACAAAGTCATCTCATTTGTGATCCTTGTCAATTTCGGGGAGAGAATAATGGCAGGATTTTCCTAGTTAATTAGGCCCCATTTGAATTGACTTTTCAAGTGTTTATGAGCATTCTTTTTCAAGAGATACACTTATATAAAGACTTAAGAAATCAATCCATCAATAATCTTTTGTTTCATCTTTGTAATTGACATCACTTTTGCCTGTATTGATTGCTTATTTATATTGTTTTCTATAGGTTGGGAAGCGTCTTCGGCACCTCACTAAACACCCCAAGAAGAAAATACAGGAGCATGCTTCTGACCTGATTGAGATGTGGAAGGAGATAGTAATCAAGGAGACTAATAAGAACAAGAAAAATGGAAATGCCAGCAGTAAAGATTCACCTAAAATTGGTTCTCCCAGTGCAGAATCAGTTAAGGTGGAGAAGTTTCAAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCAAGGTTGAGCAATTTGATAGGAATGGTGCCACAAGCTCTGTAAAATATTCCAAATCAGAAAGCGTGGTCTCGGAGAGAAACTCTGTGAAGGTTGAGAAAACTGATTCAATGGTCAAGGTTGAAAGGGTAGTTAAAGAAGAGAAGAAACCATCCAGTGGCGCAGCTGCACCTCCAAAACTTACTTCCATGATTAAATCAAAAGATGCTGCTCGAGACAAAATTAGAGAACTTCTCTTTGAGGCTTTCTCCAAAGTCCCTGGTGAAGCTGATGAAGAATTTATGGATGAGGTTAATGCAAGTGATCCTATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTCGAAAATTGGGGAGGTTCTACTGGTGCACAGAAGGCCAAGTATAGATCTATAATGTTTAACCTCAAGGATCCAAAGAACCCAGACTTTCGAAGAAAAGTTCTTCTAGGACTTATAAAGCCAGAAAGGATGATCAATATGAGCACAGCCGATATGGCAAGCGATCAGAGAAAACGTGAAAATGAAGAGATTGCACAGAAAGCTTTGTTTGATTGCGAGCGTGGAGGAGCACCAAAAGCTACTACCGATCAGTTCAAGTGTGGTCGATGTGGTCAGCGCAAAACAACCTACTATCAATTACAGACGCGGAGTGCGGATGAACCTATGACGACGTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGCTGA

mRNA sequence

ATGGAGAATGAGCTGGTGGAATTGTTTGAAGCGGCGAAGAAGGCTGCAGATGCCGCTGCAGCACCATCAAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTTGATGCCCTAAGGCAGCTCAAGAAATTCCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTTGGGAAGCGTCTTCGGCACCTCACTAAACACCCCAAGAAGAAAATACAGGAGCATGCTTCTGACCTGATTGAGATGTGGAAGGAGATAGTAATCAAGGAGACTAATAAGAACAAGAAAAATGGAAATGCCAGCAGTAAAGATTCACCTAAAATTGGTTCTCCCAGTGCAGAATCAGTTAAGGTGGAGAAGTTTCAAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCAAGGTTGAGCAATTTGATAGGAATGGTGCCACAAGCTCTGTAAAATATTCCAAATCAGAAAGCGTGGTCTCGGAGAGAAACTCTGTGAAGGTTGAGAAAACTGATTCAATGGTCAAGGTTGAAAGGGTAGTTAAAGAAGAGAAGAAACCATCCAGTGGCGCAGCTGCACCTCCAAAACTTACTTCCATGATTAAATCAAAAGATGCTGCTCGAGACAAAATTAGAGAACTTCTCTTTGAGGCTTTCTCCAAAGTCCCTGGTGAAGCTGATGAAGAATTTATGGATGAGGTTAATGCAAGTGATCCTATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTCGAAAATTGGGGAGGTTCTACTGGTGCACAGAAGGCCAAGTATAGATCTATAATGTTTAACCTCAAGGATCCAAAGAACCCAGACTTTCGAAGAAAAGTTCTTCTAGGACTTATAAAGCCAGAAAGGATGATCAATATGAGCACAGCCGATATGGCAAGCGATCAGAGAAAACGTGAAAATGAAGAGATTGCACAGAAAGCTTTGTTTGATTGCGAGCGTGGAGGAGCACCAAAAGCTACTACCGATCAGTTCAAGTGTGGTCGATGTGGTCAGCGCAAAACAACCTACTATCAATTACAGACGCGGAGTGCGGATGAACCTATGACGACGTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGCTGA

Coding sequence (CDS)

ATGGAGAATGAGCTGGTGGAATTGTTTGAAGCGGCGAAGAAGGCTGCAGATGCCGCTGCAGCACCATCAAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTTGATGCCCTAAGGCAGCTCAAGAAATTCCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTTGGGAAGCGTCTTCGGCACCTCACTAAACACCCCAAGAAGAAAATACAGGAGCATGCTTCTGACCTGATTGAGATGTGGAAGGAGATAGTAATCAAGGAGACTAATAAGAACAAGAAAAATGGAAATGCCAGCAGTAAAGATTCACCTAAAATTGGTTCTCCCAGTGCAGAATCAGTTAAGGTGGAGAAGTTTCAAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCAAGGTTGAGCAATTTGATAGGAATGGTGCCACAAGCTCTGTAAAATATTCCAAATCAGAAAGCGTGGTCTCGGAGAGAAACTCTGTGAAGGTTGAGAAAACTGATTCAATGGTCAAGGTTGAAAGGGTAGTTAAAGAAGAGAAGAAACCATCCAGTGGCGCAGCTGCACCTCCAAAACTTACTTCCATGATTAAATCAAAAGATGCTGCTCGAGACAAAATTAGAGAACTTCTCTTTGAGGCTTTCTCCAAAGTCCCTGGTGAAGCTGATGAAGAATTTATGGATGAGGTTAATGCAAGTGATCCTATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTCGAAAATTGGGGAGGTTCTACTGGTGCACAGAAGGCCAAGTATAGATCTATAATGTTTAACCTCAAGGATCCAAAGAACCCAGACTTTCGAAGAAAAGTTCTTCTAGGACTTATAAAGCCAGAAAGGATGATCAATATGAGCACAGCCGATATGGCAAGCGATCAGAGAAAACGTGAAAATGAAGAGATTGCACAGAAAGCTTTGTTTGATTGCGAGCGTGGAGGAGCACCAAAAGCTACTACCGATCAGTTCAAGTGTGGTCGATGTGGTCAGCGCAAAACAACCTACTATCAATTACAGACGCGGAGTGCGGATGAACCTATGACGACGTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGCTGA

Protein sequence

MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQKSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC*
Homology
[Close]
BLAST of Csa6G014610 vs. Swiss-Prot
Match: RDO2_ARATH (Transcription elongation factor TFIIS OS=Arabidopsis thaliana GN=TFIIS PE=1 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 6.2e-114
Identity = 215/380 (56.58%), Postives = 264/380 (69.47%), Query Frame = 1 

Query: 1   MENELVELFEAAKKAADAAAAPS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 60
           ME++L++LFE AKKAADAAA       G E S+C+DAL+QLKKFPVTY  LV+TQVGK+L
Sbjct: 1   MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60

Query: 61  RHLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAES------ 120
           R L KHP + I+  A+DL+E+WK++VI+ET K KK    +     K+     E       
Sbjct: 61  RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEAKVNKMDVEKPSNPAP 120

Query: 121 VKVEKFQKSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVER 180
           VKV+K Q+  S K  +V + E    N   + VK  +    +   N  K++     VK E+
Sbjct: 121 VKVQKLQRGDSAKSIKVERKEP--DNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDEK 180

Query: 181 VVKEE----KKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVN 240
           V K+     K P+  A APPKLT+M+K  D  RDKIRELL EA  +V GEAD+   + VN
Sbjct: 181 VSKDNQSSMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERESVN 240

Query: 241 ASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMI 300
           ASDP+RVAVSVES+MFE  G STGAQK KYRSIMFNL+D  NPD RR+VL G I PE++I
Sbjct: 241 ASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLI 300

Query: 301 NMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSA 360
            +S  DMASD+RK+EN +I +KALFDCERG A KA+TDQFKCGRCGQRK TYYQ+QTRSA
Sbjct: 301 TLSAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQTRSA 360

Query: 361 DEPMTTFVTCVNCNNHWKFC 370
           DEPMTT+VTCVNC+NHWKFC
Sbjct: 361 DEPMTTYVTCVNCDNHWKFC 378

[Close]
BLAST of Csa6G014610 vs. Swiss-Prot
Match: TCEA3_BOVIN (Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.5e-35
Identity = 107/367 (29.16%), Postives = 170/367 (46.32%), Query Frame = 1 

Query: 7   ELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKH- 66
           EL   AKK     A    +G       LD L++L  + ++ Q+L +T++G  +  + KH 
Sbjct: 6   ELLRIAKKLEKMVARKKTEGA------LDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHC 65

Query: 67  PKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQKSSSM 126
             K++   A  LI  WK+++        + G    K   K      + +    ++  +S+
Sbjct: 66  SNKEVVALAKVLIRNWKQLLDSPATPKGEKGEERVKAKKK-----EKGLDCSDWKPETSL 125

Query: 127 KVERVSKVEQ-FDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKKPSSG 186
              R  +VE+  DR  +  S       S  S      +E+++S        +    PSS 
Sbjct: 126 SPPRKKRVEEPKDRRDSVDS-----KSSATSSPKRPSMERSNSSKSKAETPRTPSSPSSP 185

Query: 187 AAAPPK--LTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSVES 246
             AP    L     + D+ RDK  E+L  A      +AD+++ D     D  ++A  +E 
Sbjct: 186 TFAPSVCLLAPCYLTGDSVRDKCVEMLSAAL-----KADDDYKDYGVNCD--KMASEIED 245

Query: 247 VMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRK 306
            +++    +    + + RS + NLKDP+NP  RR VL G I    +  M+  +MASD+ +
Sbjct: 246 HIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELR 305

Query: 307 RENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 366
                + Q+A+ + +       TTD F+C +C ++  TY Q+QTRSADEPMTTFV C  C
Sbjct: 306 ELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNEC 349

Query: 367 NNHWKFC 370
            N WKFC
Sbjct: 366 GNRWKFC 349

[Close]
BLAST of Csa6G014610 vs. Swiss-Prot
Match: TCEA3_MOUSE (Transcription elongation factor A protein 3 OS=Mus musculus GN=Tcea3 PE=1 SV=3)

HSP 1 Score: 147.5 bits (371), Expect = 2.9e-34
Identity = 110/367 (29.97%), Postives = 169/367 (46.05%), Query Frame = 1 

Query: 7   ELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKH- 66
           EL   AKK     +    +G       LD L++L    ++ Q+L +T++G  +  + KH 
Sbjct: 6   ELLRIAKKLEKMVSRKKTEGA------LDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHC 65

Query: 67  PKKKIQEHASDLIEMWKEIVIK-ETNKNKKNGNASSKDSPKIGSPS--AESVKVEKFQKS 126
             K++   A  LI+ WK ++    T K ++     +K    +G      E+      +K 
Sbjct: 66  SDKEVVSLAKVLIKNWKRLLDSPRTTKGEREEREKAKKEKGLGCSDWKPEAGLSPPRKKG 125

Query: 127 SSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKKPS 186
                 R   V+   R+  TSS K    E   S ++ V+   T S             P+
Sbjct: 126 GGEPKTRRDSVDS--RSSTTSSPKRPSLERSNSSKSKVETPTTPSSPSTPTFA-----PA 185

Query: 187 SGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSVES 246
               AP  LT      D+ RDK  E+L  A      +A++ F D     D  ++A  +E 
Sbjct: 186 VCLLAPCYLTG-----DSVRDKCVEMLSAAL-----KAEDNFKDYGVNCD--KLASEIED 245

Query: 247 VMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRK 306
            +++    +    + + RS + NLKDP+NP  RR VL G I PE +  M+  +MASD+ +
Sbjct: 246 HIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISPELIAKMTAEEMASDELR 305

Query: 307 RENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 366
                + Q+A+ + +       TTD  +C +C ++  TY Q+QTRSADEPMTTFV C  C
Sbjct: 306 ELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNEC 347

Query: 367 NNHWKFC 370
            N WKFC
Sbjct: 366 GNRWKFC 347

[Close]
BLAST of Csa6G014610 vs. Swiss-Prot
Match: TFS2_DROME (Transcription elongation factor S-II OS=Drosophila melanogaster GN=TfIIS PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-33
Identity = 108/364 (29.67%), Postives = 156/364 (42.86%), Query Frame = 1 

Query: 7   ELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKHP 66
           E+F   KK +  A+      G  + + LD L+ L+   +   IL  T++G  +  L K  
Sbjct: 6   EVFRIQKKMSKMAS-----DGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKSS 65

Query: 67  KK-KIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQKSSSM 126
           K  ++   A  LI+ WK  +                 SP   +P+  S K      SS+ 
Sbjct: 66  KDDEVIALAKTLIKNWKRFLA----------------SPAPTTPNNSSAKEGSSNNSSAS 125

Query: 127 KVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKKPSSGA 186
           K    +K        ++S     KS S  S ++  K   T S         +   PS G 
Sbjct: 126 KSTSAAK-------SSSSISGKDKSSSSSSSKDKEKKGSTSS--------SQTSFPSGGM 185

Query: 187 AAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSVESVMF 246
                        DA R K RE+L  A     GE  E         +P  +A  +E  ++
Sbjct: 186 T------------DAVRIKCREMLATALKI--GEVPE------GCGEPEEMAAELEDAIY 245

Query: 247 ENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKREN 306
             +  +    K + RS + NLKDPKNP  R   + G +  +++  M+  +MASD+ K+  
Sbjct: 246 SEFNNTDMKYKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLR 305

Query: 307 EEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNH 366
           E+  ++A+ D +        TD  KC +C +R  TY QLQTRSADEPMTTFV C  C N 
Sbjct: 306 EKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNR 313

Query: 367 WKFC 370
           WKFC
Sbjct: 366 WKFC 313

[Close]
BLAST of Csa6G014610 vs. Swiss-Prot
Match: TCEA3_HUMAN (Transcription elongation factor A protein 3 OS=Homo sapiens GN=TCEA3 PE=1 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 9.2e-33
Identity = 108/366 (29.51%), Postives = 164/366 (44.81%), Query Frame = 1 

Query: 7   ELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKH- 66
           EL   AKK     A  + +G       LD L++L    ++ Q+L +T++G  +  + KH 
Sbjct: 6   ELLRIAKKLEKMVARKNTEGA------LDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHC 65

Query: 67  PKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQKSSSM 126
             K++   A  LI+ WK ++        + G    K   K         K E        
Sbjct: 66  SDKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRK 125

Query: 127 KVE--RVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKKPSS 186
           K E  +  +     ++ A+SS K    E   S ++  +  KT S              S 
Sbjct: 126 KREDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFAS-----SM 185

Query: 187 GAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSVESV 246
              AP  LT      D+ RDK  E+L  A      +AD+++ D     D  ++A  +E  
Sbjct: 186 CLLAPCYLTG-----DSVRDKCVEMLSAAL-----KADDDYKDYGVNCD--KMASEIEDH 245

Query: 247 MFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKR 306
           +++    +    + + RS + NLKDP+NP  RR VL G I    +  M+  +MASD+ + 
Sbjct: 246 IYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRE 305

Query: 307 ENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCN 366
               + Q+A+ + +       TTD F+C +C ++  TY Q+QTRSADEPMTTFV C  C 
Sbjct: 306 LRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECG 348

Query: 367 NHWKFC 370
           N WKFC
Sbjct: 366 NRWKFC 348

[Close]
BLAST of Csa6G014610 vs. TrEMBL
Match: A0A0A0KDH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014610 PE=4 SV=1)

HSP 1 Score: 729.9 bits (1883), Expect = 1.5e-207
Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 1 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120

Query: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKK 180
           KSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKK 180

Query: 181 PSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSV 240
           PSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSV
Sbjct: 181 PSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSV 240

Query: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 300
           ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ
Sbjct: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 300

Query: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360
           RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV
Sbjct: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360

Query: 361 NCNNHWKFC 370
           NCNNHWKFC
Sbjct: 361 NCNNHWKFC 369

[Close]
BLAST of Csa6G014610 vs. TrEMBL
Match: M5X6N8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007172mg PE=4 SV=1)

HSP 1 Score: 509.6 bits (1311), Expect = 3.2e-141
Identity = 264/381 (69.29%), Postives = 308/381 (80.84%), Query Frame = 1 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           ME EL+ELFEA KK+ADAA   S DGGAEES+CLDAL QLK FPVTYQ+L+STQVGKRLR
Sbjct: 1   MEKELLELFEAVKKSADAAT--SCDGGAEESQCLDALEQLKNFPVTYQLLISTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHP+KKIQ  +S LI+ WK IVIKE NK+ KNGN    DS K  SPSAES + EK Q
Sbjct: 61  HLTKHPRKKIQTFSSALIDTWKGIVIKEANKDAKNGNLERIDSLKRASPSAESPRAEKVQ 120

Query: 121 KSSSMKVERVSKVE-----QFDRNGATSSVKYSKSESVVSER-----NSVKVEKTDSM-- 180
           K+S++KVE+VSK E     + DR    SS K   SE+V +ER     N+VK EK  S   
Sbjct: 121 KTSAVKVEKVSKAEPVEIKKVDRGVKPSSDKAYSSETVKTERKVQNANAVKTEKAASAES 180

Query: 181 VKVERVVKEEKKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEV 240
           VKVE++ KE KKP+  ++APPKLTSMIKS D ARD++R +L EA SKV  EADE F D V
Sbjct: 181 VKVEKIAKEVKKPALNSSAPPKLTSMIKSNDTARDRVRGMLHEALSKVSQEADERFADYV 240

Query: 241 NASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERM 300
           NASDPIRVAV++ESV+FE+WGGSTGAQKAKYRS++FNLKD KNPDFRRKVLLG I+ ER+
Sbjct: 241 NASDPIRVAVTLESVLFEHWGGSTGAQKAKYRSLIFNLKDQKNPDFRRKVLLGDIEAERL 300

Query: 301 INMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRS 360
           ++MSTA+MASDQR+ EN+++ QKALF+CERGGAPKATTDQFKCGRCG RKTTYYQ+QTRS
Sbjct: 301 VDMSTAEMASDQRQEENKKLEQKALFECERGGAPKATTDQFKCGRCGHRKTTYYQMQTRS 360

Query: 361 ADEPMTTFVTCVNCNNHWKFC 370
           ADEPMTT+VTCVNCNN WKFC
Sbjct: 361 ADEPMTTYVTCVNCNNRWKFC 379

[Close]
BLAST of Csa6G014610 vs. TrEMBL
Match: W9RR82_9ROSA (Transcription elongation factor A protein 2 OS=Morus notabilis GN=L484_002049 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 1.6e-132
Identity = 243/373 (65.15%), Postives = 293/373 (78.55%), Query Frame = 1 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           ME ELVELFE AKKAADAAA    +G A+ES CLDAL QLK FPVTYQ+LVSTQVGKRLR
Sbjct: 1   MERELVELFETAKKAADAAATA--EGAADESHCLDALGQLKSFPVTYQLLVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
            LTKHP+KKIQ  AS LIE+WK+IVIKET+K+ KNG   +K S K+  P  ES + EK Q
Sbjct: 61  PLTKHPRKKIQSFASSLIEIWKDIVIKETSKDIKNGKLENKASVKVEPPRTESPRPEKIQ 120

Query: 121 KSSSMKVERVS----KVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVK 180
           K+ + KVE+      KVE+F+RN A   V   K     +             VKVE++ K
Sbjct: 121 KTFNGKVEKSKAEAVKVEKFERNAAERKVPNEKPSPAKN-------------VKVEKITK 180

Query: 181 EEKKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRV 240
           E K+P+SGA+A PKLTSM++S DA RD++RE+L EA SKV GEADEE  DEVNA DPIRV
Sbjct: 181 EVKRPTSGASATPKLTSMVRSNDAVRDRVREMLHEALSKVSGEADEEMADEVNACDPIRV 240

Query: 241 AVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADM 300
           AV+VESV+FENWG S G+QKAKYRS+MFNLKD KNPDFRRKVLLG ++ ER++NMSTA+M
Sbjct: 241 AVTVESVLFENWGSSAGSQKAKYRSLMFNLKDTKNPDFRRKVLLGHVEAERLVNMSTAEM 300

Query: 301 ASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTF 360
           AS++R++EN+++ +KALF+C+RGG  +ATTDQFKCGRCG+RKTTYYQ+QTRSADEPMTT+
Sbjct: 301 ASNERQQENKKLEEKALFECQRGGPKEATTDQFKCGRCGKRKTTYYQMQTRSADEPMTTY 358

Query: 361 VTCVNCNNHWKFC 370
           VTCVNCNN WKFC
Sbjct: 361 VTCVNCNNRWKFC 358

[Close]
BLAST of Csa6G014610 vs. TrEMBL
Match: I1JYC9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G223500 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 2.7e-132
Identity = 254/379 (67.02%), Postives = 297/379 (78.36%), Query Frame = 1 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           ME ELVEL+EAAKKAADAA   S DG  EESRC+DAL QLKKFPV Y+ILV+TQVGK L+
Sbjct: 33  MEKELVELYEAAKKAADAAI--SGDGKHEESRCIDALEQLKKFPVNYKILVNTQVGKHLK 92

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
            LTKHP+ KI+  A DLIE+WK I+IKET+KNK  G+ S     K+ S + E  K  K Q
Sbjct: 93  VLTKHPRLKIKAFAIDLIEIWKGIIIKETSKNKNGGSDS-----KVESANGEKSKAGKMQ 152

Query: 121 KSSSMKVER--VSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTD--SMVKVERVVK 180
           KS S+KVE+    KVE+ DRNG T S     SE++   +N VK EKTD  + VKVE++ K
Sbjct: 153 KSPSVKVEKGETVKVEKIDRNGTTKS----SSENMKKVQNDVKNEKTDRSASVKVEKIAK 212

Query: 181 EEK------KPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNA 240
           EEK      K SS +AAPPKL +MIKS DA RDKIRE+L EA SKV GEADE+ +D VN 
Sbjct: 213 EEKPVSGAKKMSSSSAAPPKLKTMIKSNDATRDKIREILHEALSKVTGEADEDLVDVVNN 272

Query: 241 SDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMIN 300
           SDPIRVAV+VESV+FE WG S GAQK KYRS+MFNLKD  NPDFRRKVLLG+I+PE++IN
Sbjct: 273 SDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDSNNPDFRRKVLLGVIEPEQLIN 332

Query: 301 MSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSAD 360
           MSTA+MAS+QRK+E ++I +KALF+CERGG PKATTDQFKCGRCGQRKTTYYQ+QTRSAD
Sbjct: 333 MSTAEMASEQRKQEYQKITEKALFECERGGPPKATTDQFKCGRCGQRKTTYYQMQTRSAD 392

Query: 361 EPMTTFVTCVNCNNHWKFC 370
           EPMTT+VTCV CNN WKFC
Sbjct: 393 EPMTTYVTCVVCNNRWKFC 400

[Close]
BLAST of Csa6G014610 vs. TrEMBL
Match: C6TBG6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 2.3e-131
Identity = 253/379 (66.75%), Postives = 295/379 (77.84%), Query Frame = 1 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           ME ELVEL+EAAKKAADAA   S DG  EESRC+DA  QLKKFPV Y+ILV+TQVGK L+
Sbjct: 1   MEKELVELYEAAKKAADAAI--SGDGKHEESRCIDAFEQLKKFPVNYKILVNTQVGKHLK 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
            LTKHP+ KI+  A DLIE+WK I+IKET+KNK  G+ S     K+ S + E  K  K Q
Sbjct: 61  VLTKHPRLKIKAFAIDLIEIWKGIIIKETSKNKNGGSDS-----KVESANGEKSKAGKMQ 120

Query: 121 KSSSMKVER--VSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTD--SMVKVERVVK 180
           KS S+KVE+    KVE+ DRNG T S     SE++   +N VK EKTD  + VKVE++ K
Sbjct: 121 KSPSVKVEKGETVKVEKIDRNGTTKS----SSENMKKVQNDVKNEKTDRSASVKVEKIAK 180

Query: 181 EEK------KPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNA 240
           EEK      K SS +AAPPKL +MIKS DA RDKIRE+L EA SKV GEADE+ +D VN 
Sbjct: 181 EEKPVSGAKKMSSSSAAPPKLKTMIKSNDATRDKIREILHEALSKVTGEADEDLVDVVNN 240

Query: 241 SDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMIN 300
           SDPIRVAV+VESV+FE WG S GAQK KYRS+MFNLKD  NPDFRRKVLLG+I+PE++IN
Sbjct: 241 SDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDSNNPDFRRKVLLGVIEPEQLIN 300

Query: 301 MSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSAD 360
           MSTA+MAS+QRK+E ++I +KALF+CERGG PKATTDQFKCGRCGQRKTTYYQ+QTRSAD
Sbjct: 301 MSTAEMASEQRKQEYQKITEKALFECERGGPPKATTDQFKCGRCGQRKTTYYQMQTRSAD 360

Query: 361 EPMTTFVTCVNCNNHWKFC 370
           EPMTT VTCV CNN WKFC
Sbjct: 361 EPMTTHVTCVVCNNRWKFC 368

[Close]
BLAST of Csa6G014610 vs. TAIR10
Match: AT2G38560.1 (AT2G38560.1 transcript elongation factor IIS)

HSP 1 Score: 412.1 bits (1058), Expect = 3.5e-115
Identity = 215/380 (56.58%), Postives = 264/380 (69.47%), Query Frame = 1 

Query: 1   MENELVELFEAAKKAADAAAAPS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 60
           ME++L++LFE AKKAADAAA       G E S+C+DAL+QLKKFPVTY  LV+TQVGK+L
Sbjct: 1   MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60

Query: 61  RHLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAES------ 120
           R L KHP + I+  A+DL+E+WK++VI+ET K KK    +     K+     E       
Sbjct: 61  RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEAKVNKMDVEKPSNPAP 120

Query: 121 VKVEKFQKSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVER 180
           VKV+K Q+  S K  +V + E    N   + VK  +    +   N  K++     VK E+
Sbjct: 121 VKVQKLQRGDSAKSIKVERKEP--DNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDEK 180

Query: 181 VVKEE----KKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVN 240
           V K+     K P+  A APPKLT+M+K  D  RDKIRELL EA  +V GEAD+   + VN
Sbjct: 181 VSKDNQSSMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERESVN 240

Query: 241 ASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMI 300
           ASDP+RVAVSVES+MFE  G STGAQK KYRSIMFNL+D  NPD RR+VL G I PE++I
Sbjct: 241 ASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLI 300

Query: 301 NMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSA 360
            +S  DMASD+RK+EN +I +KALFDCERG A KA+TDQFKCGRCGQRK TYYQ+QTRSA
Sbjct: 301 TLSAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQTRSA 360

Query: 361 DEPMTTFVTCVNCNNHWKFC 370
           DEPMTT+VTCVNC+NHWKFC
Sbjct: 361 DEPMTTYVTCVNCDNHWKFC 378

[Close]
BLAST of Csa6G014610 vs. TAIR10
Match: AT2G42730.1 (AT2G42730.1 F-box family protein)

HSP 1 Score: 108.6 bits (270), Expect = 8.3e-24
Identity = 60/127 (47.24%), Postives = 78/127 (61.42%), Query Frame = 1 

Query: 189 PKLTSMIKSKDAARDKIRELLFEAFSKVPGE-ADEEFMDEVNASDPIRVAVSVESVMFEN 248
           P  ++M K+ D+ RDK+RE+L  +  KV  E  D E    V A DP  VAVSVES MFE 
Sbjct: 594 PTHSTMKKTGDSKRDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEK 653

Query: 249 WGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKRENEE 308
            G   G  KAKYRSI+FN+ D  NPD RRKVL+G I  ER++ M   +M S++ ++E + 
Sbjct: 654 LGCFMGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGSEKIQKEVQR 713

Query: 309 IAQKALF 315
           I + A F
Sbjct: 714 IKENARF 720

[Close]
BLAST of Csa6G014610 vs. TAIR10
Match: AT4G18720.1 (AT4G18720.1 Transcription factor IIS protein)

HSP 1 Score: 105.9 bits (263), Expect = 5.4e-23
Identity = 61/125 (48.80%), Postives = 77/125 (61.60%), Query Frame = 1 

Query: 176 KEEKKPSSGAAAP-PKLTSMIKSKDAARDKIRELLFEAFSKVPGEA-DEEFMDEVNASDP 235
           +E+ + +  AA   P   +M K+ D+ RDK+RE+L  + +KV  E  D E    V A DP
Sbjct: 91  REKSRDNREAAVKIPTHATMKKTGDSKRDKVREILQTSLAKVASEVVDTEMKTRVTACDP 150

Query: 236 IRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMST 295
             VAVSVE+ MFEN G   G QKAKYRSI+FN+ D  NPD RRKVLLG I  ER++ M  
Sbjct: 151 WVVAVSVETAMFENLGCFMGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEK 210

Query: 296 ADMAS 299
            +M S
Sbjct: 211 EEMGS 215

[Close]
BLAST of Csa6G014610 vs. TAIR10
Match: AT5G42325.1 (AT5G42325.1 Transcription factor IIS protein)

HSP 1 Score: 75.5 bits (184), Expect = 7.8e-14
Identity = 48/141 (34.04%), Postives = 73/141 (51.77%), Query Frame = 1 

Query: 176 KEEKKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDE--VNASDP 235
           +E+ +        P  ++M K+ D+ RDK+ E+L  + +KV  E  +  M    +   DP
Sbjct: 91  REKSRDRETPVKIPTHSTMKKTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMTVCDP 150

Query: 236 IRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMST 295
             VAVSVES M                SI+FN+ D  NPD RRKVL+G I  ER++ M  
Sbjct: 151 WVVAVSVESAM----------------SILFNMGDSNNPDLRRKVLIGEISGERLVKMEK 210

Query: 296 ADMASDQRKRENEEIAQKALF 315
            +M S++ ++E + I ++A F
Sbjct: 211 DEMGSEKIQKEVQRIKERARF 215

[Close]
BLAST of Csa6G014610 vs. TAIR10
Match: AT2G27780.1 (AT2G27780.1 Transcription factor IIS family protein)

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-11
Identity = 44/107 (41.12%), Postives = 61/107 (57.01%), Query Frame = 1 

Query: 3   NELVELFEAAKKAADAAAAPS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRH 62
           +E+V+LFEAAKKAAD A A     G AE SRC+DAL  L K  +T +     ++  +L  
Sbjct: 260 DEMVKLFEAAKKAADVANAKGVLSGKAEASRCIDALSVLMKINITPKPKEPRRMMDKLEG 319

Query: 63  LTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGS 109
           LTKH  + I   AS L+ +W++  I+E  + K    ASSK+  + G+
Sbjct: 320 LTKHKDRMICHVASALLHLWRQ-RIREQERKKSVTKASSKNIQRRGN 365

[Close]
BLAST of Csa6G014610 vs. NCBI nr
Match: gi|449441244|ref|XP_004138392.1| (PREDICTED: transcription elongation factor S-II [Cucumis sativus])

HSP 1 Score: 729.9 bits (1883), Expect = 2.2e-207
Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 1 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120

Query: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKK 180
           KSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKK 180

Query: 181 PSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSV 240
           PSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSV
Sbjct: 181 PSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSV 240

Query: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 300
           ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ
Sbjct: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 300

Query: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360
           RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV
Sbjct: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360

Query: 361 NCNNHWKFC 370
           NCNNHWKFC
Sbjct: 361 NCNNHWKFC 369

[Close]
BLAST of Csa6G014610 vs. NCBI nr
Match: gi|659113848|ref|XP_008456781.1| (PREDICTED: transcription elongation factor S-II [Cucumis melo])

HSP 1 Score: 710.7 bits (1833), Expect = 1.4e-201
Identity = 355/369 (96.21%), Postives = 364/369 (98.64%), Query Frame = 1 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPS ESVKVEKFQ
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSVESVKVEKFQ 120

Query: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKK 180
           KSSSMKVERVSKVEQFDRNGATSSVKYS+SES VS+ +SVK EKTDS+VKVER+VKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESAVSDSSSVKFEKTDSVVKVERIVKEEKK 180

Query: 181 PSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSV 240
           PSSGAAAPPKLTSM+KSKDAARDKIRELLFEAFSKVPGEADE+ MDEVNASDPIRVA+SV
Sbjct: 181 PSSGAAAPPKLTSMVKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAISV 240

Query: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQ 300
           ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINM+TADMASDQ
Sbjct: 241 ESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTADMASDQ 300

Query: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360
           RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV
Sbjct: 301 RKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCV 360

Query: 361 NCNNHWKFC 370
           NCNNHWKFC
Sbjct: 361 NCNNHWKFC 369

[Close]
BLAST of Csa6G014610 vs. NCBI nr
Match: gi|596048603|ref|XP_007220400.1| (hypothetical protein PRUPE_ppa007172mg [Prunus persica])

HSP 1 Score: 509.6 bits (1311), Expect = 4.6e-141
Identity = 264/381 (69.29%), Postives = 308/381 (80.84%), Query Frame = 1 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           ME EL+ELFEA KK+ADAA   S DGGAEES+CLDAL QLK FPVTYQ+L+STQVGKRLR
Sbjct: 1   MEKELLELFEAVKKSADAAT--SCDGGAEESQCLDALEQLKNFPVTYQLLISTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHP+KKIQ  +S LI+ WK IVIKE NK+ KNGN    DS K  SPSAES + EK Q
Sbjct: 61  HLTKHPRKKIQTFSSALIDTWKGIVIKEANKDAKNGNLERIDSLKRASPSAESPRAEKVQ 120

Query: 121 KSSSMKVERVSKVE-----QFDRNGATSSVKYSKSESVVSER-----NSVKVEKTDSM-- 180
           K+S++KVE+VSK E     + DR    SS K   SE+V +ER     N+VK EK  S   
Sbjct: 121 KTSAVKVEKVSKAEPVEIKKVDRGVKPSSDKAYSSETVKTERKVQNANAVKTEKAASAES 180

Query: 181 VKVERVVKEEKKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEV 240
           VKVE++ KE KKP+  ++APPKLTSMIKS D ARD++R +L EA SKV  EADE F D V
Sbjct: 181 VKVEKIAKEVKKPALNSSAPPKLTSMIKSNDTARDRVRGMLHEALSKVSQEADERFADYV 240

Query: 241 NASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERM 300
           NASDPIRVAV++ESV+FE+WGGSTGAQKAKYRS++FNLKD KNPDFRRKVLLG I+ ER+
Sbjct: 241 NASDPIRVAVTLESVLFEHWGGSTGAQKAKYRSLIFNLKDQKNPDFRRKVLLGDIEAERL 300

Query: 301 INMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRS 360
           ++MSTA+MASDQR+ EN+++ QKALF+CERGGAPKATTDQFKCGRCG RKTTYYQ+QTRS
Sbjct: 301 VDMSTAEMASDQRQEENKKLEQKALFECERGGAPKATTDQFKCGRCGHRKTTYYQMQTRS 360

Query: 361 ADEPMTTFVTCVNCNNHWKFC 370
           ADEPMTT+VTCVNCNN WKFC
Sbjct: 361 ADEPMTTYVTCVNCNNRWKFC 379

[Close]
BLAST of Csa6G014610 vs. NCBI nr
Match: gi|645256911|ref|XP_008234168.1| (PREDICTED: transcription elongation factor S-II [Prunus mume])

HSP 1 Score: 508.1 bits (1307), Expect = 1.3e-140
Identity = 264/381 (69.29%), Postives = 307/381 (80.58%), Query Frame = 1 

Query: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           ME EL+ELFEA KK+ADAA   S DGGAEES+CLDAL QLK FPVTYQ+L+STQVGKRLR
Sbjct: 1   MEKELLELFEAVKKSADAAT--SCDGGAEESQCLDALEQLKNFPVTYQLLISTQVGKRLR 60

Query: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120
           HLTKHP+KKIQ  +S LI+ WK IVIKE NK+ KNGN    DS K  SPSAES + EK Q
Sbjct: 61  HLTKHPRKKIQTFSSALIDTWKGIVIKEANKDAKNGNLERIDSLKRASPSAESPRAEKVQ 120

Query: 121 KSSSMKVERVSKVE-----QFDRNGATSSVKYSKSESVVSER-----NSVKVEKTDSM-- 180
           K+S++KVE+VSK E     + DR    SS K   SE+V +ER     N+ K EK  S   
Sbjct: 121 KTSAVKVEKVSKAEPVEIKKVDRGVKPSSDKAYSSETVKTERKVQNANADKTEKAASAES 180

Query: 181 VKVERVVKEEKKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEV 240
           VKVE++ KE KKP+  ++APPKLTSMIKS D ARD++R +L EA SKV  EADE F D V
Sbjct: 181 VKVEKIAKEVKKPALNSSAPPKLTSMIKSNDTARDRVRGMLHEALSKVSQEADERFADYV 240

Query: 241 NASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERM 300
           NASDPIRVAV+VESV+FE+WGGSTGAQKAKYRS++FNLKD KNPDFRRKVLLG I+ ER+
Sbjct: 241 NASDPIRVAVTVESVLFEHWGGSTGAQKAKYRSLIFNLKDQKNPDFRRKVLLGDIEAERL 300

Query: 301 INMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRS 360
           ++MSTA+MASDQR+ EN+++ QKALF+CERGGAPKATTDQFKCGRCG RKTTYYQ+QTRS
Sbjct: 301 VDMSTAEMASDQRQEENKKLEQKALFECERGGAPKATTDQFKCGRCGHRKTTYYQMQTRS 360

Query: 361 ADEPMTTFVTCVNCNNHWKFC 370
           ADEPMTT+VTCVNCNN WKFC
Sbjct: 361 ADEPMTTYVTCVNCNNRWKFC 379

[Close]
BLAST of Csa6G014610 vs. NCBI nr
Match: gi|694369676|ref|XP_009362783.1| (PREDICTED: LOW QUALITY PROTEIN: transcription elongation factor S-II-like [Pyrus x bretschneideri])

HSP 1 Score: 498.0 bits (1281), Expect = 1.4e-137
Identity = 258/386 (66.84%), Postives = 304/386 (78.76%), Query Frame = 1 

Query: 1   MENELVELFEAAKKAAD-----AAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQV 60
           ME +L+ELF+A KK+AD     AA A S DGGAEES CL+A  QL  FPVT+QILVSTQV
Sbjct: 1   MEKDLLELFDAVKKSADPRKERAAPATSCDGGAEESECLEAFEQLNNFPVTHQILVSTQV 60

Query: 61  GKRLRHLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVK 120
           GKRLRHLTKHP+KKIQ  AS L+E WKEIV+ E  KN KNGN    DS K  SP A+S +
Sbjct: 61  GKRLRHLTKHPRKKIQSVASGLLEKWKEIVMSEVGKNVKNGNLERIDSLKRDSPRADSPR 120

Query: 121 VEKFQKSSSMKVERVSKVE-----QFDRNGATSSVKYSKSESVVSER-----NSVKVEKT 180
            EK QK+S++ VE+VSK E     + DR+   SS K   S ++ +ER     N VK EK 
Sbjct: 121 PEKVQKTSAVNVEKVSKAEPVEVKKVDRDAKPSSEKAYSSGTIKTERKVQNVNPVKTEKA 180

Query: 181 DSM--VKVERVVKEEKKPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEE 240
            S+  VKVE+VVK+ KKP+  ++ PPKLTSMIK  D ARDK+R LL EA SKV  E DE 
Sbjct: 181 ASVESVKVEKVVKDVKKPALNSSDPPKLTSMIKCNDTARDKVRVLLHEALSKVSEEGDER 240

Query: 241 FMDEVNASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLI 300
           F+DEVNA+DPIRVAV+VESV+FENWGGSTG+QKAKYRS++FNLKD KNPDFRRKVLLG I
Sbjct: 241 FVDEVNAADPIRVAVTVESVLFENWGGSTGSQKAKYRSLIFNLKDQKNPDFRRKVLLGHI 300

Query: 301 KPERMINMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQ 360
           K ER++++STA+MASDQR+ EN+++ QKALF+CERGGAPKATTDQFKCGRCGQRKTTYYQ
Sbjct: 301 KAERLVDLSTAEMASDQRQEENQKLEQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQ 360

Query: 361 LQTRSADEPMTTFVTCVNCNNHWKFC 370
           +QTRSADEPMTT+VTCVNCNN WKFC
Sbjct: 361 MQTRSADEPMTTYVTCVNCNNRWKFC 386

The following BLAST results are available for this feature:
BLAST of Csa6G014610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RDO2_ARATH6.2e-11456.58Transcription elongation factor TFIIS OS=Arabidopsis thaliana GN=TFIIS PE=1 SV=1[more]
TCEA3_BOVIN1.5e-3529.16Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3 PE=2 SV=1[more]
TCEA3_MOUSE2.9e-3429.97Transcription elongation factor A protein 3 OS=Mus musculus GN=Tcea3 PE=1 SV=3[more]
TFS2_DROME1.4e-3329.67Transcription elongation factor S-II OS=Drosophila melanogaster GN=TfIIS PE=2 SV... [more]
TCEA3_HUMAN9.2e-3329.51Transcription elongation factor A protein 3 OS=Homo sapiens GN=TCEA3 PE=1 SV=2[more]
BLAST of Csa6G014610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDH9_CUCSA1.5e-207100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014610 PE=4 SV=1[more]
M5X6N8_PRUPE3.2e-14169.29Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007172mg PE=4 SV=1[more]
W9RR82_9ROSA1.6e-13265.15Transcription elongation factor A protein 2 OS=Morus notabilis GN=L484_002049 PE... [more]
I1JYC9_SOYBN2.7e-13267.02Uncharacterized protein OS=Glycine max GN=GLYMA_04G223500 PE=4 SV=1[more]
C6TBG6_SOYBN2.3e-13166.75Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
BLAST of Csa6G014610 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G38560.13.5e-11556.58 transcript elongation factor IIS[more]
AT2G42730.18.3e-2447.24 F-box family protein[more]
AT4G18720.15.4e-2348.80 Transcription factor IIS protein[more]
AT5G42325.17.8e-1434.04 Transcription factor IIS protein[more]
AT2G27780.11.6e-1141.12 Transcription factor IIS family protein[more]
BLAST of Csa6G014610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449441244|ref|XP_004138392.1|2.2e-207100.00PREDICTED: transcription elongation factor S-II [Cucumis sativus][more]
gi|659113848|ref|XP_008456781.1|1.4e-20196.21PREDICTED: transcription elongation factor S-II [Cucumis melo][more]
gi|596048603|ref|XP_007220400.1|4.6e-14169.29hypothetical protein PRUPE_ppa007172mg [Prunus persica][more]
gi|645256911|ref|XP_008234168.1|1.3e-14069.29PREDICTED: transcription elongation factor S-II [Prunus mume][more]
gi|694369676|ref|XP_009362783.1|1.4e-13766.84PREDICTED: LOW QUALITY PROTEIN: transcription elongation factor S-II-like [Pyrus... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR003617TFIIS/CRSP70_N_sub
IPR003618TFIIS_cen_dom
IPR006289TFSII
IPR016492Transcription elongation factor, TFIIS-related
IPR017923TFIIS_N
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006355regulation of transcription, DNA-templated
GO:0032784regulation of DNA-templated transcription, elongation
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032784 regulation of DNA-templated transcription, elongation
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006448 regulation of translational elongation
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003746 translation elongation factor activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU089792cucumber EST collection version 3.0transcribed_cluster
CU113214cucumber EST collection version 3.0transcribed_cluster
CU118157cucumber EST collection version 3.0transcribed_cluster
CU120770cucumber EST collection version 3.0transcribed_cluster
CU163321cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G014610.1Csa6G014610.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU163321CU163321transcribed_cluster
CU120770CU120770transcribed_cluster
CU118157CU118157transcribed_cluster
CU089792CU089792transcribed_cluster
CU113214CU113214transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 329..367
score: 1.1
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 329..368
score: 9.7
IPR001222Zinc finger, TFIIS-typePROSITEPS00466ZF_TFIIS_1coord: 331..366
scor
IPR001222Zinc finger, TFIIS-typePROFILEPS51133ZF_TFIIS_2coord: 327..367
score: 14
IPR003617Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-typeSMARTSM00509TFS2_5coord: 8..87
score: 2.2
IPR003618Transcription elongation factor S-II, central domainGENE3DG3DSA:1.10.472.30coord: 187..300
score: 4.8
IPR003618Transcription elongation factor S-II, central domainPFAMPF07500TFIIS_Mcoord: 199..315
score: 1.6
IPR003618Transcription elongation factor S-II, central domainSMARTSM00510mid_6coord: 199..307
score: 8.3
IPR003618Transcription elongation factor S-II, central domainPROFILEPS51321TFIIS_CENTRALcoord: 201..324
score: 33
IPR003618Transcription elongation factor S-II, central domainunknownSSF46942Elongation factor TFIIS domain 2coord: 188..299
score: 6.28
IPR006289Transcription elongation factor, TFIISTIGRFAMsTIGR01385TIGR01385coord: 12..369
score: 5.5
IPR016492Transcription elongation factor, TFIIS-relatedPIRPIRSF006704TFIIScoord: 2..369
score: 7.7
IPR017923Transcription factor IIS, N-terminalGENE3DG3DSA:1.20.930.10coord: 7..98
score: 1.4
IPR017923Transcription factor IIS, N-terminalPFAMPF08711Med26coord: 36..85
score: 5.0
IPR017923Transcription factor IIS, N-terminalPROFILEPS51319TFIIS_Ncoord: 10..88
score: 20
IPR017923Transcription factor IIS, N-terminalunknownSSF47676Conserved domain common to transcription factors TFIIS, elongin A, CRSP70coord: 27..100
score: 6.15
NoneNo IPR availableGENE3DG3DSA:2.20.25.10coord: 302..369
score: 8.8
NoneNo IPR availablePANTHERPTHR11477TRANSCRIPTION ELONGATION FACTOR S-IIcoord: 32..120
score: 6.0E-121coord: 178..369
score: 6.0E
NoneNo IPR availableunknownSSF57783Zinc beta-ribboncoord: 310..367
score: 2.48