CmoCh15G001820 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G001820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transcription elongation factor A protein 2
Location	Cmo_Chr15 : 839088 .. 843750 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGCCCGGGACGCCGTTTCCAATCCACGGACATCCAAGCCGCCGCCGGCTGGGGTGTCGCCGCTGCAACAACTGCTCTGTGGGTCGTTCAGGTTTTCTCCTTCCCTAAATTCATTGATCTGTACTATTATTTCTGGTTTTCGGAGATTTATGTAGTGAATTTTTTGACTCTCTATGTTAGAATAAAGGATGCATCGATCTTCTTGAAAGTTGATTCTTGATTCCGTTAACGATTTCTATTTCTAGTCTTGGACGATTTACCGTAGCGTGTTTGTGATTTCTATGTTCACAATTCATCTTTGACTTATTTTGCCACCAGCGTTAATTTTGGTTACGGGATTAGATATCATTTTCAGCTGGCCATTCGCAGTTGAGATCTGGAAGAAATGTGTTCCTATGATCTATGGTGTCTATGGGCAATACGTATCGTGAGGATCTGAGAGAGCTATTTATTTATTTATATTTGTTTTCTTTTACTATTTTCTTCTCTTTCGTCATTGATCGAGCACAAGATTATACTGGCCCTGTCGGAACTCTTTTTGAATTATCAAGCCTCTCAGGGTTTCTTCACACCGTGTTTTCGAAAAGCATATTTGTGTGTATATCTATGTGTTCGGTAATCATTTCTTATTTTTCTCTCTAGTATGAAGCAAATTGAAAACAAAGATTAGGAGATTTATTTTCTCTTCGAAGTTCAAAACATTCTCCGATGGGATCAGAATGAAGTAACCATGCCGCCAAAGACATGCCCTTTCATAGAATGACAACATTTGGATGTAGTTGCTTTACATTGAATGTCTCAATATAGATCTTGTTCAAGTAACGTCGTATCTCTCTATATAAAACACCATATTAGGCCTTGAATCTCTCGTGTTTCTAAAAATTTGTAGTAGGTCATTATCTGTGGCTTGACGTCTTGCCATCCCCATGATCACACTCTCTGGTTCCACATCGAAAGTGTGGTATACTTCCGAATCCAGTTCCAAGTTCAATTAACTTCAATGTTATGGAGCTTGTAGCTACTCACGGAGGCTGGCGATCCTACCTGTGGAATAGTCTTGATCCTCTACCTGCTGTTTCTACAGTCCTTCCCTCGTCCCATAGTTTCATCACTGTAATTGGCTTCTACCTTTGGTTTAATCCAGTAGTGAACTTTCCAGTAACTGGTGCAAATTTCCAGTGATTCTGCCGTTCAAAATCCCAATCCTGACTGCCATCAAGACTATCAATCACTCCTTGGATCTGGCACTCATTTTGTATCTAAGTATTGGCATGCTCAAAACATGTTCTTTCTATTTCATTTTTTTATCGAATCACCTTCTCTCACAATGTTACAATGTTTCTTTCTAGCATAGGAGGCTTTATAAGCCTCTCCGTAGGGTGAAGACCACACTGCATTTCTGCTATTATCAAACTCAAATTTGATCTTCCTTCTATCAACCAATCATATGTTTTATCCACTTTCTACTTTCCTCTAGGAATCCCCAAAATTGGAGGGCTCATGCCAAAGCTGATAGGGCCCATACAATTGGATTTAAGTTTTAACAATTAATGTCAATCTCAATTGGAAATGCTATGCTGTGTGCTAGAAAAAGACATAATTCTGTACATTGTTCCTAATTGTCTCAAGAGGCTGCAACCAAACTAAATTGTTTTGAGTTTTGAAATATTCATTCTCGTTCAAACAGTTGGTTTCAACTGATTCTGTACCGTGCTATTTTCTTTGTTGATAAAAAGGGTTTTTTCTTTTTTGTGTTATGCTGGAGATTTCAGTACCATTATATATCTATCTGTAGAGAATTAAGTGTATACAATCATTCCTCTTTCTTAGTACCATTAATATGTTTCGAATCTAACCATTCCCTTTTCTCTTTTGAAAAAACCCTGTGCAGCCATTCGACTGGATCAAGAAAACGTTCTTCGACAAGCCACAAGAGGCATAAATTGTTATTTGACTCGACCCAGCTTTTTGTTAATAAGTATCAGTTGATTGCCGCAAATGGGTAAACTGCAGAGTTCATTGGAATAACATGTTTTGTAATAGACTTTGTTTTTCATTAAACTGAGTTGGAATTTTATCGTTTTCAAGTGTGGTTGATGTTTTTTCTTATCCCTATTTACTTCTATTTTCTAGGACCTTTTCCTTTTCCCATGCCTCAGAGACCACAGCTTCTGTCTACTTTATAAAAACAATTTTAAAAATTTAATAAAATTTCCACATTTTTTTAGGAAAAGAATTTCGTTGAACAATCAAGAATTTAAATTCTATTTTGGCTGAGTAGAGACTAGTTTTTGAGAGATGAATTTATTTTTTGAAAAACAGAAATAAATTCAAATTTGTTTAAACATATAGAATAGGTGAATCAAGTAGTGGTTAAGTTTAATTATTTGTTAGAGTATTGTCATAATATGATTGGCTAAGCTAAACTAGATTTATATGAACGTATATATTATAAGGTTTAAATTTTTTTATACTTTTAAATTTATCGATGCTGAATTCTTTAATACATTTGTCCACATAATTCTTTAAGCATATATAAAAGAAAAAGGGCATATTTGTAAAGGTTAAAAATGTAATAAGTTCGATGATCTTGATGCGATAAAACTGCCTTGAATTGGCGAGAGATGATCCGGAAAACGACGTCGTTGCCAAAAACCCCATCCTCTTCTCTCGCAGTCTATGGATAAATGGGTAGATCTTACCATTATCCTGTACGCCACGTTTTTCGGCTCTGTCCGTCGGATCTAGCTCATCTACTTCTTCCTCGAGGGTTAATTTTTATCTCTGCTGCCTCCGCCGTCTCTCTGCTGAAAAGGGGGTTTTTCCTGTAGCCGATTGTGGTTGAGTTTCCCCTTTTCTGTTTTGGTTTTCTTTGATTTACTGTGGGATTGCGAGCGGTTTTCTGCTGGCGATTCAGTTCTCTGTAAGTGATGATACTCATTCGATATCGATTATTTGCCATCGGCAGTTGAATGTCTTTTAATTCGTGCTATTCTTTTGCTTGTTCATTGACAAACGAGGTCAAATGCGAGTTTGGTTGCAATACCCGATTTTGTATGCGTATGTTTGTACCTTTCCGTTTTCTTGTTGTTGTTGGGACCTGATTATTCTTTTCTTCGAATGTGTTGGATAGATAATATAAAAAATCCCAAGTTGGCAGTGAGTCGATGGAGAATGAGCTGGTGGAGTTATTTGAAGCGGCGAAGAAGGCTGCAGACGCCGCTGCAGCACCATCGAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTAGATGCCCTACGTCAGCTCAAGAAATTTCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTTTTCTTCTCATTTGACTCCAAATTCGTTTCTTTTGTTGATGGTAGATGGATAGTGAAGATGTAAACAGCCGACTTGTTCATAAATCATACATGGTTTCTATCATAAATTAAGCCTAAATTCATTGTTTGCTCGTTTACGAATTGGTTTCATGACGAGGCAAGTTCACTCTATTTCATCTGTGTTTTTTGAGTTCACATCCATATAACGAAGCCATCTATAAGTTGTGACCCTTTTAAGTTTTGGGGAGATAATTTATGTCTTGCTATGACATTTTCCTGTGAAATTGAGGTCACTTTGCCAGCGTTGATAGCTCCTGTATCTTGTCTTCTTTAGGTCGGGAAGCGCCTTCGGCACCTCACTAAGCACCCCAAGAAGAAAATACAGAACTATGCTTCTGATCTGATTGAGATATGGAAGGAAATAGTAATCAAGGATACTAACAAGAATAAGAAAAATGGGAACATCGACTGTGAAGAGTCGCCTAAAATTGGTTCTCCCAGTGCGGAGTCCGTTAAGGTGGAGAAGTTTAGAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCCAGGTCGAGCAATTTGATAGAAATGGTGTCACAAGCTCTGCAAAATTTTCCAGATCGGAAAGCGACATCTCGGGGAAAAACCCTGTTAAGGTTGAGAAAACTGATTCAGTGGTCAAGGTTGAAAGGATAGTTAAAGAAGAGAAGAGAATCTCAATAGAAAAGAAACCATCAAGTGGCCCTGATGCACCTCCAAAGCTTACTTCCATGATTAAATCAAAAGATGCTGCTCGAGACAAAATAAGAGAACTTCTCTTTGAGGCTTTCTCCAAAGTTCCTAGTGAGGCTGATGAAGATGTTATGGATGAAGTAAATGCAAGTGATCCGATTCGGGTTGCTGTTTCGGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACTGGCTCACAGAAGACCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGACTTTCGAAGAAAAGTTCTTCTTGGACTTATAAAGCCAGAAAGGCTGATCAATATGAGCACAGCTGATATGGCAAGCGACCAGAGAAAACGTGAAAATGAAGAGATTGAACAGAAAGCCTTATTCGATTGTGAGCGTGCAGGAGCTCCAAAAGCTACTACCGATCAATTCAAGTGTGGTCGATGCGGTCAGCGAAAAACAACCTACTACCAATTGCAGACGCGGAGTGCTGATGAACCTATGACCACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGTTGA

mRNA sequence

ATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGCCCGGGACGCCGTTTCCAATCCACGGACATCCAAGCCGCCGCCGGCTGGGGTGTCGCCGCTGCAACAACTGCTCTGTGGGTCGTTCAGGTTTTCTCCTTCCCTAAATTCATTGATCTGTACTATTATTTCTGGTTTTCGGAGATTTATCTACTCACGGAGGCTGGCGATCCTACCTGTGGAATAGTCTTGATCCTCTACCTGCTGTTTCTACAGTCCTTCCCTCGTCCCATAGTTTCATCACTCCATTCGACTGGATCAAGAAAACGTTCTTCGACAAGCCACAAGAGGCATAAATTGTTATTTGACTCGACCCAGCTTTTTGTTAATAAGTATCAGTTGATTGCCGCAAATGGTGAGTCGATGGAGAATGAGCTGGTGGAGTTATTTGAAGCGGCGAAGAAGGCTGCAGACGCCGCTGCAGCACCATCGAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTAGATGCCCTACGTCAGCTCAAGAAATTTCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTCGGGAAGCGCCTTCGGCACCTCACTAAGCACCCCAAGAAGAAAATACAGAACTATGCTTCTGATCTGATTGAGATATGGAAGGAAATAGTAATCAAGGATACTAACAAGAATAAGAAAAATGGGAACATCGACTGTGAAGAGTCGCCTAAAATTGGTTCTCCCAGTGCGGAGTCCGTTAAGGTGGAGAAGTTTAGAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCCAGGTCGAGCAATTTGATAGAAATGGTGTCACAAGCTCTGCAAAATTTTCCAGATCGGAAAGCGACATCTCGGGGAAAAACCCTGTTAAGGTTGAGAAAACTGATTCAGTGGTCAAGGTTGAAAGGATAGTTAAAGAAGAGAAGAGAATCTCAATAGAAAAGAAACCATCAAGTGGCCCTGATGCACCTCCAAAGCTTACTTCCATGATTAAATCAAAAGATGCTGCTCGAGACAAAATAAGAGAACTTCTCTTTGAGGCTTTCTCCAAAGTTCCTAGTGAGGCTGATGAAGATGTTATGGATGAAGTAAATGCAAGTGATCCGATTCGGGTTGCTGTTTCGGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACTGGCTCACAGAAGACCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGACTTTCGAAGAAAAGTTCTTCTTGGACTTATAAAGCCAGAAAGGCTGATCAATATGAGCACAGCTGATATGGCAAGCGACCAGAGAAAACGTGAAAATGAAGAGATTGAACAGAAAGCCTTATTCGATTGTGAGCGTGCAGGAGCTCCAAAAGCTACTACCGATCAATTCAAGTGTGGTCGATGCGGTCAGCGAAAAACAACCTACTACCAATTGCAGACGCGGAGTGCTGATGAACCTATGACCACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGTTGA

Coding sequence (CDS)

ATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGCCCGGGACGCCGTTTCCAATCCACGGACATCCAAGCCGCCGCCGGCTGGGGTGTCGCCGCTGCAACAACTGCTCTGTGGGTCGTTCAGGTTTTCTCCTTCCCTAAATTCATTGATCTGTACTATTATTTCTGGTTTTCGGAGATTTATCTACTCACGGAGGCTGGCGATCCTACCTGTGGAATAGTCTTGATCCTCTACCTGCTGTTTCTACAGTCCTTCCCTCGTCCCATAGTTTCATCACTCCATTCGACTGGATCAAGAAAACGTTCTTCGACAAGCCACAAGAGGCATAAATTGTTATTTGACTCGACCCAGCTTTTTGTTAATAAGTATCAGTTGATTGCCGCAAATGGTGAGTCGATGGAGAATGAGCTGGTGGAGTTATTTGAAGCGGCGAAGAAGGCTGCAGACGCCGCTGCAGCACCATCGAATGATGGGGGAGCCGAAGAAAGTCGTTGCCTAGATGCCCTACGTCAGCTCAAGAAATTTCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTCGGGAAGCGCCTTCGGCACCTCACTAAGCACCCCAAGAAGAAAATACAGAACTATGCTTCTGATCTGATTGAGATATGGAAGGAAATAGTAATCAAGGATACTAACAAGAATAAGAAAAATGGGAACATCGACTGTGAAGAGTCGCCTAAAATTGGTTCTCCCAGTGCGGAGTCCGTTAAGGTGGAGAAGTTTAGAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCCAGGTCGAGCAATTTGATAGAAATGGTGTCACAAGCTCTGCAAAATTTTCCAGATCGGAAAGCGACATCTCGGGGAAAAACCCTGTTAAGGTTGAGAAAACTGATTCAGTGGTCAAGGTTGAAAGGATAGTTAAAGAAGAGAAGAGAATCTCAATAGAAAAGAAACCATCAAGTGGCCCTGATGCACCTCCAAAGCTTACTTCCATGATTAAATCAAAAGATGCTGCTCGAGACAAAATAAGAGAACTTCTCTTTGAGGCTTTCTCCAAAGTTCCTAGTGAGGCTGATGAAGATGTTATGGATGAAGTAAATGCAAGTGATCCGATTCGGGTTGCTGTTTCGGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACTGGCTCACAGAAGACCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGACTTTCGAAGAAAAGTTCTTCTTGGACTTATAAAGCCAGAAAGGCTGATCAATATGAGCACAGCTGATATGGCAAGCGACCAGAGAAAACGTGAAAATGAAGAGATTGAACAGAAAGCCTTATTCGATTGTGAGCGTGCAGGAGCTCCAAAAGCTACTACCGATCAATTCAAGTGTGGTCGATGCGGTCAGCGAAAAACAACCTACTACCAATTGCAGACGCGGAGTGCTGATGAACCTATGACCACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGTTGA

Homology

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BLAST of CmoCh15G001820 vs. Swiss-Prot
Match: RDO2_ARATH (Transcription elongation factor TFIIS OS=Arabidopsis thaliana GN=TFIIS PE=1 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 2.7e-107
Identity = 217/383 (56.66%), Postives = 273/383 (71.28%), Query Frame = 1


Query: 133 MENELVELFEAAKKAADAAAAPS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 192
           ME++L++LFE AKKAADAAA       G E S+C+DAL+QLKKFPVTY  LV+TQVGK+L
Sbjct: 1   MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60

Query: 193 RHLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKN-GNIDCEESPKIGSPSAES----- 252
           R L KHP + I++ A+DL+EIWK++VI++T K KK  G   C+E+ K+     E      
Sbjct: 61  RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEA-KVNKMDVEKPSNPA 120

Query: 253 -VKVEKFRKSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVE 312
            VKV+K ++  S K  +V + E    N V +  K  R   DI   N  K++     VK E
Sbjct: 121 PVKVQKLQRGDSAKSIKVERKEP--DNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDE 180

Query: 313 RIVKEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMD 372
           ++ K+ +  S  K P+   +APPKLT+M+K  D  RDKIRELL EA  +V  EAD+   +
Sbjct: 181 KVSKDNQ--SSMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERE 240

Query: 373 EVNASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPE 432
            VNASDP+RVAVSVES+MFE  G STG+QK KYRSIMFNL+D  NPD RR+VL G I PE
Sbjct: 241 SVNASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPE 300

Query: 433 RLINMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQT 492
           +LI +S  DMASD+RK+EN +I++KALFDCER  A KA+TDQFKCGRCGQRK TYYQ+QT
Sbjct: 301 KLITLSAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQT 360

Query: 493 RSADEPMTTFVTCVNCNNHWKFC 508
           RSADEPMTT+VTCVNC+NHWKFC
Sbjct: 361 RSADEPMTTYVTCVNCDNHWKFC 378

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BLAST of CmoCh15G001820 vs. Swiss-Prot
Match: TFS2_DROME (Transcription elongation factor S-II OS=Drosophila melanogaster GN=TfIIS PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.8e-29
Identity = 113/372 (30.38%), Postives = 162/372 (43.55%), Query Frame = 1


Query: 139 ELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKHP 198
           E+F   KK +  A+      G  + + LD L+ L+   +   IL  T++G  +  L K  
Sbjct: 6   EVFRIQKKMSKMAS-----DGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKSS 65

Query: 199 KK-KIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFRKSSSM 258
           K  ++   A  LI+ WK  +                 SP   +P+  S K      SS+ 
Sbjct: 66  KDDEVIALAKTLIKNWKRFLA----------------SPAPTTPNNSSAKEGSSNNSSAS 125

Query: 259 KVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKRISIEK 318
           K               TS+AK   S S ISGK+      +           +EK+ S   
Sbjct: 126 KS--------------TSAAK---SSSSISGKDKSSSSSSSK--------DKEKKGSTSS 185

Query: 319 KPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFS--KVPSEADEDVMDEVNASDPIRVA 378
             +S P             DA R K RE+L  A    +VP    E          P  +A
Sbjct: 186 SQTSFPSGG--------MTDAVRIKCREMLATALKIGEVPEGCGE----------PEEMA 245

Query: 379 VSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTADMA 438
             +E  ++  +  +    K + RS + NLKDPKNP  R   + G +  ++L  M+  +MA
Sbjct: 246 AELEDAIYSEFNNTDMKYKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMA 305

Query: 439 SDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFV 498
           SD+ K+  E+  ++A+ D + A      TD  KC +C +R  TY QLQTRSADEPMTTFV
Sbjct: 306 SDEMKKLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFV 313

Query: 499 TCVNCNNHWKFC 508
            C  C N WKFC
Sbjct: 366 MCNECGNRWKFC 313

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BLAST of CmoCh15G001820 vs. Swiss-Prot
Match: TCEA3_BOVIN (Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.0e-29
Identity = 119/380 (31.32%), Postives = 174/380 (45.79%), Query Frame = 1


Query: 139 ELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKH- 198
           EL   AKK     A    +G       LD L++L  + ++ Q+L +T++G  +  + KH 
Sbjct: 6   ELLRIAKKLEKMVARKKTEGA------LDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHC 65

Query: 199 PKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFRKS--- 258
             K++   A  LI  WK++             +D   +PK G    E VK +K  K    
Sbjct: 66  SNKEVVALAKVLIRNWKQL-------------LDSPATPK-GEKGEERVKAKKKEKGLDC 125

Query: 259 ------SSMKVERVSQVEQ-FDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIV 318
                 +S+   R  +VE+  DR     S    +S +  S K P       S  K E   
Sbjct: 126 SDWKPETSLSPPRKKRVEEPKDRRDSVDS----KSSATSSPKRPSMERSNSSKSKAETPR 185

Query: 319 KEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVN 378
                 S    PS    AP  LT      D+ RDK  E+L  A      +AD+D  D   
Sbjct: 186 TPSSPSSPTFAPSVCLLAPCYLTG-----DSVRDKCVEMLSAAL-----KADDDYKDYGV 245

Query: 379 ASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLI 438
             D  ++A  +E  +++    +    + + RS + NLKDP+NP  RR VL G I    + 
Sbjct: 246 NCD--KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIA 305

Query: 439 NMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSA 498
            M+  +MASD+ +     + Q+A+ + + A     TTD F+C +C ++  TY Q+QTRSA
Sbjct: 306 KMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSA 349

Query: 499 DEPMTTFVTCVNCNNHWKFC 508
           DEPMTTFV C  C N WKFC
Sbjct: 366 DEPMTTFVLCNECGNRWKFC 349

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BLAST of CmoCh15G001820 vs. Swiss-Prot
Match: TCEA3_MOUSE (Transcription elongation factor A protein 3 OS=Mus musculus GN=Tcea3 PE=1 SV=3)

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-28
Identity = 113/383 (29.50%), Postives = 176/383 (45.95%), Query Frame = 1


Query: 139 ELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKH- 198
           EL   AKK     +    +G       LD L++L    ++ Q+L +T++G  +  + KH 
Sbjct: 6   ELLRIAKKLEKMVSRKKTEGA------LDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHC 65

Query: 199 PKKKIQNYASDLIEIWKEIVI---------KDTNKNKKNGNIDCEE-SPKIG-SPSAESV 258
             K++ + A  LI+ WK ++          ++  K KK   + C +  P+ G SP  +  
Sbjct: 66  SDKEVVSLAKVLIKNWKRLLDSPRTTKGEREEREKAKKEKGLGCSDWKPEAGLSPPRKKG 125

Query: 259 KVEKFRKSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERI 318
             E   +  S+            R+  TSS K    E   S K+ V+   T S       
Sbjct: 126 GGEPKTRRDSVD----------SRSSTTSSPKRPSLERSNSSKSKVETPTTPS------- 185

Query: 319 VKEEKRISIEKKPSSGPDAPPK--LTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMD 378
                       PS+   AP    L     + D+ RDK  E+L  A      +A+++  D
Sbjct: 186 -----------SPSTPTFAPAVCLLAPCYLTGDSVRDKCVEMLSAAL-----KAEDNFKD 245

Query: 379 EVNASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPE 438
                D  ++A  +E  +++    +    + + RS + NLKDP+NP  RR VL G I PE
Sbjct: 246 YGVNCD--KLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISPE 305

Query: 439 RLINMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQT 498
            +  M+  +MASD+ +     + Q+A+ + + A     TTD  +C +C ++  TY Q+QT
Sbjct: 306 LIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQT 347

Query: 499 RSADEPMTTFVTCVNCNNHWKFC 508
           RSADEPMTTFV C  C N WKFC
Sbjct: 366 RSADEPMTTFVLCNECGNRWKFC 347

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BLAST of CmoCh15G001820 vs. Swiss-Prot
Match: TFS2_SCHPO (Transcription elongation factor S-II OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.6e-27
Identity = 82/227 (36.12%), Postives = 126/227 (55.51%), Query Frame = 1


Query: 283 ESDISGKNPVKVEKTDSVVKVERI-VKEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARD 342
           ++D+S   P+K   T S    +   V  + +  ++K+ SSG          +   D   D
Sbjct: 75  KADVSKGRPLKTTTTTSSTPSKHADVGSQAQKQVQKQSSSGQRTFKSDNVNVNVTD---D 134

Query: 343 KIRE-LLFEAFSKVPSEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGSQ-KTKYRS 402
           KIR   +   ++ +  ++DE      ++S  I  A  +++ +     G TGS+ + + RS
Sbjct: 135 KIRNNCIGLMYNALVIDSDE------SSSLIIAKAKEIDAQVLARAAGKTGSEYRNRMRS 194

Query: 403 IMFNLKDPKNPDFRRKVLLGLIKPERLINMSTADMASDQRKRENEEIEQKALFDCERAGA 462
           +  NLKD  NP  R  VL   I P+RL  M++A++AS+ R++E+ ++EQ+ LF  + A  
Sbjct: 195 LYMNLKDKNNPKLRASVLRNEITPQRLSTMTSAELASEDRRKEDAKLEQENLFHAQGAKP 254

Query: 463 PKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKF 507
            KA TD F CG+C Q+K +YYQ+QTRSADEPMTTF  C  C N WKF
Sbjct: 255 QKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRWKF 292

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BLAST of CmoCh15G001820 vs. TrEMBL
Match: A0A0A0KDH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014610 PE=4 SV=1)

HSP 1 Score: 649.0 bits (1673), Expect = 4.6e-183
Identity = 337/375 (89.87%), Postives = 353/375 (94.13%), Query Frame = 1


Query: 133 MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 192
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 193 HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 252
           HLTKHPKKKIQ +ASDLIE+WKEIVIK+TNKNKKNGN   ++SPKIGSPSAESVKVEKF+
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120

Query: 253 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR 312
           KSSSMKVERVS+VEQFDRNG TSS K+S+SES +S +N VKVEKTDS+VKVER+VKEEK 
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEK- 180

Query: 313 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 372
                KPSSG  APPKLTSMIKSKDAARDKIRELLFEAFSKVP EADE+ MDEVNASDPI
Sbjct: 181 -----KPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPI 240

Query: 373 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 432
           RVAVSVESVMFENWGGSTG+QK KYRSIMFNLKDPKNPDFRRKVLLGLIKPER+INMSTA
Sbjct: 241 RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTA 300

Query: 433 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 492
           DMASDQRKRENEEI QKALFDCER GAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 493 TFVTCVNCNNHWKFC 508
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 369

[Close]

BLAST of CmoCh15G001820 vs. TrEMBL
Match: M5X6N8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007172mg PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 8.5e-129
Identity = 256/387 (66.15%), Postives = 303/387 (78.29%), Query Frame = 1


Query: 133 MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 192
           ME EL+ELFEA KK+ADAA   S DGGAEES+CLDAL QLK FPVTYQ+L+STQVGKRLR
Sbjct: 1   MEKELLELFEAVKKSADAAT--SCDGGAEESQCLDALEQLKNFPVTYQLLISTQVGKRLR 60

Query: 193 HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 252
           HLTKHP+KKIQ ++S LI+ WK IVIK+ NK+ KNGN++  +S K  SPSAES + EK +
Sbjct: 61  HLTKHPRKKIQTFSSALIDTWKGIVIKEANKDAKNGNLERIDSLKRASPSAESPRAEKVQ 120

Query: 253 KSSSMKVERVSQVE-----QFDRNGVTSSAKFSRSES-----DISGKNPVKVEKTDSV-- 312
           K+S++KVE+VS+ E     + DR    SS K   SE+      +   N VK EK  S   
Sbjct: 121 KTSAVKVEKVSKAEPVEIKKVDRGVKPSSDKAYSSETVKTERKVQNANAVKTEKAASAES 180

Query: 313 VKVERIVKEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADE 372
           VKVE+I KE K      KP+    APPKLTSMIKS D ARD++R +L EA SKV  EADE
Sbjct: 181 VKVEKIAKEVK------KPALNSSAPPKLTSMIKSNDTARDRVRGMLHEALSKVSQEADE 240

Query: 373 DVMDEVNASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGL 432
              D VNASDPIRVAV++ESV+FE+WGGSTG+QK KYRS++FNLKD KNPDFRRKVLLG 
Sbjct: 241 RFADYVNASDPIRVAVTLESVLFEHWGGSTGAQKAKYRSLIFNLKDQKNPDFRRKVLLGD 300

Query: 433 IKPERLINMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYY 492
           I+ ERL++MSTA+MASDQR+ EN+++EQKALF+CER GAPKATTDQFKCGRCG RKTTYY
Sbjct: 301 IEAERLVDMSTAEMASDQRQEENKKLEQKALFECERGGAPKATTDQFKCGRCGHRKTTYY 360

Query: 493 QLQTRSADEPMTTFVTCVNCNNHWKFC 508
           Q+QTRSADEPMTT+VTCVNCNN WKFC
Sbjct: 361 QMQTRSADEPMTTYVTCVNCNNRWKFC 379

[Close]

BLAST of CmoCh15G001820 vs. TrEMBL
Match: I1JYC9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G223500 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 2.0e-125
Identity = 253/380 (66.58%), Postives = 298/380 (78.42%), Query Frame = 1


Query: 132 SMENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 191
           SME ELVEL+EAAKKAADAA   S DG  EESRC+DAL QLKKFPV Y+ILV+TQVGK L
Sbjct: 32  SMEKELVELYEAAKKAADAAI--SGDGKHEESRCIDALEQLKKFPVNYKILVNTQVGKHL 91

Query: 192 RHLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKF 251
           + LTKHP+ KI+ +A DLIEIWK I+IK+T+KNK  G+       K+ S + E  K  K 
Sbjct: 92  KVLTKHPRLKIKAFAIDLIEIWKGIIIKETSKNKNGGS-----DSKVESANGEKSKAGKM 151

Query: 252 RKSSSMKVER--VSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTD--SVVKVERIV 311
           +KS S+KVE+    +VE+ DRNG T S+    SE+    +N VK EKTD  + VKVE+I 
Sbjct: 152 QKSPSVKVEKGETVKVEKIDRNGTTKSS----SENMKKVQNDVKNEKTDRSASVKVEKIA 211

Query: 312 KEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVN 371
           KEEK +S  KK SS   APPKL +MIKS DA RDKIRE+L EA SKV  EADED++D VN
Sbjct: 212 KEEKPVSGAKKMSSSSAAPPKLKTMIKSNDATRDKIREILHEALSKVTGEADEDLVDVVN 271

Query: 372 ASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLI 431
            SDPIRVAV+VESV+FE WG S G+QK KYRS+MFNLKD  NPDFRRKVLLG+I+PE+LI
Sbjct: 272 NSDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDSNNPDFRRKVLLGVIEPEQLI 331

Query: 432 NMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSA 491
           NMSTA+MAS+QRK+E ++I +KALF+CER G PKATTDQFKCGRCGQRKTTYYQ+QTRSA
Sbjct: 332 NMSTAEMASEQRKQEYQKITEKALFECERGGPPKATTDQFKCGRCGQRKTTYYQMQTRSA 391

Query: 492 DEPMTTFVTCVNCNNHWKFC 508
           DEPMTT+VTCV CNN WKFC
Sbjct: 392 DEPMTTYVTCVVCNNRWKFC 400

[Close]

BLAST of CmoCh15G001820 vs. TrEMBL
Match: F6GXW2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0058g01410 PE=4 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 1.3e-124
Identity = 251/381 (65.88%), Postives = 288/381 (75.59%), Query Frame = 1


Query: 133 MENELVELFEAAKKAADAAAAPS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 192
           ME ELVELFE+AKKAADAAA    +  G E  RC+DAL+QLK FPVTY+ L STQVGKRL
Sbjct: 1   MERELVELFESAKKAADAAATDGVSSNGPEVGRCVDALKQLKSFPVTYEALASTQVGKRL 60

Query: 193 RHLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKF 252
           RHLTKHPK KIQ+ ASDL+E+WK++VI +T +NKKNG +D   S K      E+VKVE  
Sbjct: 61  RHLTKHPKGKIQSLASDLLEMWKKVVIDET-RNKKNGGLDNNGSAKAEVSKTETVKVEMA 120

Query: 253 RKSSSMKVERVSQVE-----QFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERI 312
            K+  +KVE+ S+VE     +FDR   T     SRSE+       +KVEK     +VE  
Sbjct: 121 HKAGGVKVEKASKVETVKIEKFDRGSSTKPGSVSRSET-------IKVEK-----RVEN- 180

Query: 313 VKEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEV 372
           V E K+ S  KKP    + PPKLT+MIK  DA RDK+RELL EA  KV SEADED+ DEV
Sbjct: 181 VDERKQFSSVKKPPQASNGPPKLTAMIKCNDALRDKVRELLAEALFKVASEADEDIKDEV 240

Query: 373 NASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERL 432
           NA DPIRVAVSVESVMFE  G S G+QK KYRSIMFN+KDP NPD RRKVLLG +KP+RL
Sbjct: 241 NACDPIRVAVSVESVMFEKMGRSNGTQKFKYRSIMFNIKDPNNPDLRRKVLLGEVKPDRL 300

Query: 433 INMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRS 492
           INMS  +MAS+QR+REN +I++KALFDCER G PKATTDQFKCGRCGQRKTTYYQLQTRS
Sbjct: 301 INMSPEEMASNQRQRENSQIKEKALFDCERGGPPKATTDQFKCGRCGQRKTTYYQLQTRS 360

Query: 493 ADEPMTTFVTCVNCNNHWKFC 508
           ADEPMTTFVTCVNCNNHWKFC
Sbjct: 361 ADEPMTTFVTCVNCNNHWKFC 367

[Close]

BLAST of CmoCh15G001820 vs. TrEMBL
Match: C6TBG6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 4.8e-124
Identity = 251/379 (66.23%), Postives = 295/379 (77.84%), Query Frame = 1


Query: 133 MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 192
           ME ELVEL+EAAKKAADAA   S DG  EESRC+DA  QLKKFPV Y+ILV+TQVGK L+
Sbjct: 1   MEKELVELYEAAKKAADAAI--SGDGKHEESRCIDAFEQLKKFPVNYKILVNTQVGKHLK 60

Query: 193 HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 252
            LTKHP+ KI+ +A DLIEIWK I+IK+T+KNK  G+       K+ S + E  K  K +
Sbjct: 61  VLTKHPRLKIKAFAIDLIEIWKGIIIKETSKNKNGGS-----DSKVESANGEKSKAGKMQ 120

Query: 253 KSSSMKVER--VSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTD--SVVKVERIVK 312
           KS S+KVE+    +VE+ DRNG T S+    SE+    +N VK EKTD  + VKVE+I K
Sbjct: 121 KSPSVKVEKGETVKVEKIDRNGTTKSS----SENMKKVQNDVKNEKTDRSASVKVEKIAK 180

Query: 313 EEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNA 372
           EEK +S  KK SS   APPKL +MIKS DA RDKIRE+L EA SKV  EADED++D VN 
Sbjct: 181 EEKPVSGAKKMSSSSAAPPKLKTMIKSNDATRDKIREILHEALSKVTGEADEDLVDVVNN 240

Query: 373 SDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLIN 432
           SDPIRVAV+VESV+FE WG S G+QK KYRS+MFNLKD  NPDFRRKVLLG+I+PE+LIN
Sbjct: 241 SDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDSNNPDFRRKVLLGVIEPEQLIN 300

Query: 433 MSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSAD 492
           MSTA+MAS+QRK+E ++I +KALF+CER G PKATTDQFKCGRCGQRKTTYYQ+QTRSAD
Sbjct: 301 MSTAEMASEQRKQEYQKITEKALFECERGGPPKATTDQFKCGRCGQRKTTYYQMQTRSAD 360

Query: 493 EPMTTFVTCVNCNNHWKFC 508
           EPMTT VTCV CNN WKFC
Sbjct: 361 EPMTTHVTCVVCNNRWKFC 368

[Close]

BLAST of CmoCh15G001820 vs. TAIR10
Match: AT2G38560.1 (AT2G38560.1 transcript elongation factor IIS)

HSP 1 Score: 390.6 bits (1002), Expect = 1.5e-108
Identity = 217/383 (56.66%), Postives = 273/383 (71.28%), Query Frame = 1


Query: 133 MENELVELFEAAKKAADAAAAPS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 192
           ME++L++LFE AKKAADAAA       G E S+C+DAL+QLKKFPVTY  LV+TQVGK+L
Sbjct: 1   MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60

Query: 193 RHLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKN-GNIDCEESPKIGSPSAES----- 252
           R L KHP + I++ A+DL+EIWK++VI++T K KK  G   C+E+ K+     E      
Sbjct: 61  RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEA-KVNKMDVEKPSNPA 120

Query: 253 -VKVEKFRKSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVE 312
            VKV+K ++  S K  +V + E    N V +  K  R   DI   N  K++     VK E
Sbjct: 121 PVKVQKLQRGDSAKSIKVERKEP--DNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDE 180

Query: 313 RIVKEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMD 372
           ++ K+ +  S  K P+   +APPKLT+M+K  D  RDKIRELL EA  +V  EAD+   +
Sbjct: 181 KVSKDNQ--SSMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERE 240

Query: 373 EVNASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPE 432
            VNASDP+RVAVSVES+MFE  G STG+QK KYRSIMFNL+D  NPD RR+VL G I PE
Sbjct: 241 SVNASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPE 300

Query: 433 RLINMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQT 492
           +LI +S  DMASD+RK+EN +I++KALFDCER  A KA+TDQFKCGRCGQRK TYYQ+QT
Sbjct: 301 KLITLSAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQT 360

Query: 493 RSADEPMTTFVTCVNCNNHWKFC 508
           RSADEPMTT+VTCVNC+NHWKFC
Sbjct: 361 RSADEPMTTYVTCVNCDNHWKFC 378

[Close]

BLAST of CmoCh15G001820 vs. TAIR10
Match: AT2G42730.1 (AT2G42730.1 F-box family protein)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-22
Identity = 60/127 (47.24%), Postives = 81/127 (63.78%), Query Frame = 1


Query: 327 PKLTSMIKSKDAARDKIRELLFEAFSKVPSE-ADEDVMDEVNASDPIRVAVSVESVMFEN 386
           P  ++M K+ D+ RDK+RE+L  +  KV SE  D ++   V A DP  VAVSVES MFE 
Sbjct: 594 PTHSTMKKTGDSKRDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEK 653

Query: 387 WGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTADMASDQRKRENEE 446
            G   G  K KYRSI+FN+ D  NPD RRKVL+G I  ERL+ M   +M S++ ++E + 
Sbjct: 654 LGCFMGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGSEKIQKEVQR 713

Query: 447 IEQKALF 453
           I++ A F
Sbjct: 714 IKENARF 720

[Close]

BLAST of CmoCh15G001820 vs. TAIR10
Match: AT4G18720.1 (AT4G18720.1 Transcription factor IIS protein)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-21
Identity = 58/111 (52.25%), Postives = 72/111 (64.86%), Query Frame = 1


Query: 327 PKLTSMIKSKDAARDKIRELLFEAFSKVPSEA-DEDVMDEVNASDPIRVAVSVESVMFEN 386
           P   +M K+ D+ RDK+RE+L  + +KV SE  D ++   V A DP  VAVSVE+ MFEN
Sbjct: 105 PTHATMKKTGDSKRDKVREILQTSLAKVASEVVDTEMKTRVTACDPWVVAVSVETAMFEN 164

Query: 387 WGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTADMAS 437
            G   G QK KYRSI+FN+ D  NPD RRKVLLG I  ERL+ M   +M S
Sbjct: 165 LGCFMGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEKEEMGS 215

[Close]

BLAST of CmoCh15G001820 vs. TAIR10
Match: AT5G42325.1 (AT5G42325.1 Transcription factor IIS protein)

HSP 1 Score: 73.6 bits (179), Expect = 4.0e-13
Identity = 48/128 (37.50%), Postives = 72/128 (56.25%), Query Frame = 1


Query: 327 PKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDE--VNASDPIRVAVSVESVMFE 386
           P  ++M K+ D+ RDK+ E+L  + +KV +E  +  M    +   DP  VAVSVES M  
Sbjct: 104 PTHSTMKKTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMTVCDPWVVAVSVESAM-- 163

Query: 387 NWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTADMASDQRKRENE 446
                         SI+FN+ D  NPD RRKVL+G I  ERL+ M   +M S++ ++E +
Sbjct: 164 --------------SILFNMGDSNNPDLRRKVLIGEISGERLVKMEKDEMGSEKIQKEVQ 215

Query: 447 EIEQKALF 453
            I+++A F
Sbjct: 224 RIKERARF 215

[Close]

BLAST of CmoCh15G001820 vs. TAIR10
Match: AT2G33090.1 (AT2G33090.1 Transcription elongation factor (TFIIS) family protein)

HSP 1 Score: 60.8 bits (146), Expect = 2.7e-09
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 1


Query: 134 ENELVELFEAAKKAADAAAAPSNDGG-AEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 193
           + + +ELFE AKK+AD A A        E S C+D L  L +FP++ + + + ++  RL 
Sbjct: 151 DTDTLELFEIAKKSADFANAKGILASEVETSMCVDTLTLLLEFPISARDMETRKLMVRLE 210

Query: 194 HLTKHPKKKIQNYASDLIEIWKEIV 218
           HLTKH  +KI N AS L++ W+E +
Sbjct: 211 HLTKHKNRKICNSASKLLQCWRESI 235

[Close]

BLAST of CmoCh15G001820 vs. NCBI nr
Match: gi|449441244|ref|XP_004138392.1| (PREDICTED: transcription elongation factor S-II [Cucumis sativus])

HSP 1 Score: 649.0 bits (1673), Expect = 6.6e-183
Identity = 337/375 (89.87%), Postives = 353/375 (94.13%), Query Frame = 1


Query: 133 MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 192
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 193 HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 252
           HLTKHPKKKIQ +ASDLIE+WKEIVIK+TNKNKKNGN   ++SPKIGSPSAESVKVEKF+
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120

Query: 253 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR 312
           KSSSMKVERVS+VEQFDRNG TSS K+S+SES +S +N VKVEKTDS+VKVER+VKEEK 
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEK- 180

Query: 313 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 372
                KPSSG  APPKLTSMIKSKDAARDKIRELLFEAFSKVP EADE+ MDEVNASDPI
Sbjct: 181 -----KPSSGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPI 240

Query: 373 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 432
           RVAVSVESVMFENWGGSTG+QK KYRSIMFNLKDPKNPDFRRKVLLGLIKPER+INMSTA
Sbjct: 241 RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTA 300

Query: 433 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 492
           DMASDQRKRENEEI QKALFDCER GAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 493 TFVTCVNCNNHWKFC 508
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 369

[Close]

BLAST of CmoCh15G001820 vs. NCBI nr
Match: gi|659113848|ref|XP_008456781.1| (PREDICTED: transcription elongation factor S-II [Cucumis melo])

HSP 1 Score: 647.9 bits (1670), Expect = 1.5e-182
Identity = 336/375 (89.60%), Postives = 351/375 (93.60%), Query Frame = 1


Query: 133 MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 192
           MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 193 HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 252
           HLTKHPKKKIQ +ASDLIE+WKEIVIK+TNKNKKNGN   ++SPKIGSPS ESVKVEKF+
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSVESVKVEKFQ 120

Query: 253 KSSSMKVERVSQVEQFDRNGVTSSAKFSRSESDISGKNPVKVEKTDSVVKVERIVKEEKR 312
           KSSSMKVERVS+VEQFDRNG TSS K+SRSES +S  + VK EKTDSVVKVERIVKEEK 
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESAVSDSSSVKFEKTDSVVKVERIVKEEK- 180

Query: 313 ISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADEDVMDEVNASDPI 372
                KPSSG  APPKLTSM+KSKDAARDKIRELLFEAFSKVP EADEDVMDEVNASDPI
Sbjct: 181 -----KPSSGAAAPPKLTSMVKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPI 240

Query: 373 RVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINMSTA 432
           RVA+SVESVMFENWGGSTG+QK KYRSIMFNLKDPKNPDFRRKVLLGLIKPER+INM+TA
Sbjct: 241 RVAISVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTA 300

Query: 433 DMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 492
           DMASDQRKRENEEI QKALFDCER GAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT
Sbjct: 301 DMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 360

Query: 493 TFVTCVNCNNHWKFC 508
           TFVTCVNCNNHWKFC
Sbjct: 361 TFVTCVNCNNHWKFC 369

[Close]

BLAST of CmoCh15G001820 vs. NCBI nr
Match: gi|596048603|ref|XP_007220400.1| (hypothetical protein PRUPE_ppa007172mg [Prunus persica])

HSP 1 Score: 468.8 bits (1205), Expect = 1.2e-128
Identity = 256/387 (66.15%), Postives = 303/387 (78.29%), Query Frame = 1


Query: 133 MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 192
           ME EL+ELFEA KK+ADAA   S DGGAEES+CLDAL QLK FPVTYQ+L+STQVGKRLR
Sbjct: 1   MEKELLELFEAVKKSADAAT--SCDGGAEESQCLDALEQLKNFPVTYQLLISTQVGKRLR 60

Query: 193 HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 252
           HLTKHP+KKIQ ++S LI+ WK IVIK+ NK+ KNGN++  +S K  SPSAES + EK +
Sbjct: 61  HLTKHPRKKIQTFSSALIDTWKGIVIKEANKDAKNGNLERIDSLKRASPSAESPRAEKVQ 120

Query: 253 KSSSMKVERVSQVE-----QFDRNGVTSSAKFSRSES-----DISGKNPVKVEKTDSV-- 312
           K+S++KVE+VS+ E     + DR    SS K   SE+      +   N VK EK  S   
Sbjct: 121 KTSAVKVEKVSKAEPVEIKKVDRGVKPSSDKAYSSETVKTERKVQNANAVKTEKAASAES 180

Query: 313 VKVERIVKEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADE 372
           VKVE+I KE K      KP+    APPKLTSMIKS D ARD++R +L EA SKV  EADE
Sbjct: 181 VKVEKIAKEVK------KPALNSSAPPKLTSMIKSNDTARDRVRGMLHEALSKVSQEADE 240

Query: 373 DVMDEVNASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGL 432
              D VNASDPIRVAV++ESV+FE+WGGSTG+QK KYRS++FNLKD KNPDFRRKVLLG 
Sbjct: 241 RFADYVNASDPIRVAVTLESVLFEHWGGSTGAQKAKYRSLIFNLKDQKNPDFRRKVLLGD 300

Query: 433 IKPERLINMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYY 492
           I+ ERL++MSTA+MASDQR+ EN+++EQKALF+CER GAPKATTDQFKCGRCG RKTTYY
Sbjct: 301 IEAERLVDMSTAEMASDQRQEENKKLEQKALFECERGGAPKATTDQFKCGRCGHRKTTYY 360

Query: 493 QLQTRSADEPMTTFVTCVNCNNHWKFC 508
           Q+QTRSADEPMTT+VTCVNCNN WKFC
Sbjct: 361 QMQTRSADEPMTTYVTCVNCNNRWKFC 379

[Close]

BLAST of CmoCh15G001820 vs. NCBI nr
Match: gi|645256911|ref|XP_008234168.1| (PREDICTED: transcription elongation factor S-II [Prunus mume])

HSP 1 Score: 467.2 bits (1201), Expect = 3.6e-128
Identity = 256/387 (66.15%), Postives = 302/387 (78.04%), Query Frame = 1


Query: 133 MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 192
           ME EL+ELFEA KK+ADAA   S DGGAEES+CLDAL QLK FPVTYQ+L+STQVGKRLR
Sbjct: 1   MEKELLELFEAVKKSADAAT--SCDGGAEESQCLDALEQLKNFPVTYQLLISTQVGKRLR 60

Query: 193 HLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVKVEKFR 252
           HLTKHP+KKIQ ++S LI+ WK IVIK+ NK+ KNGN++  +S K  SPSAES + EK +
Sbjct: 61  HLTKHPRKKIQTFSSALIDTWKGIVIKEANKDAKNGNLERIDSLKRASPSAESPRAEKVQ 120

Query: 253 KSSSMKVERVSQVE-----QFDRNGVTSSAKFSRSES-----DISGKNPVKVEKTDSV-- 312
           K+S++KVE+VS+ E     + DR    SS K   SE+      +   N  K EK  S   
Sbjct: 121 KTSAVKVEKVSKAEPVEIKKVDRGVKPSSDKAYSSETVKTERKVQNANADKTEKAASAES 180

Query: 313 VKVERIVKEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVPSEADE 372
           VKVE+I KE K      KP+    APPKLTSMIKS D ARD++R +L EA SKV  EADE
Sbjct: 181 VKVEKIAKEVK------KPALNSSAPPKLTSMIKSNDTARDRVRGMLHEALSKVSQEADE 240

Query: 373 DVMDEVNASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRKVLLGL 432
              D VNASDPIRVAV+VESV+FE+WGGSTG+QK KYRS++FNLKD KNPDFRRKVLLG 
Sbjct: 241 RFADYVNASDPIRVAVTVESVLFEHWGGSTGAQKAKYRSLIFNLKDQKNPDFRRKVLLGD 300

Query: 433 IKPERLINMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQRKTTYY 492
           I+ ERL++MSTA+MASDQR+ EN+++EQKALF+CER GAPKATTDQFKCGRCG RKTTYY
Sbjct: 301 IEAERLVDMSTAEMASDQRQEENKKLEQKALFECERGGAPKATTDQFKCGRCGHRKTTYY 360

Query: 493 QLQTRSADEPMTTFVTCVNCNNHWKFC 508
           Q+QTRSADEPMTT+VTCVNCNN WKFC
Sbjct: 361 QMQTRSADEPMTTYVTCVNCNNRWKFC 379

[Close]

BLAST of CmoCh15G001820 vs. NCBI nr
Match: gi|694369676|ref|XP_009362783.1| (PREDICTED: LOW QUALITY PROTEIN: transcription elongation factor S-II-like [Pyrus x bretschneideri])

HSP 1 Score: 464.2 bits (1193), Expect = 3.0e-127
Identity = 254/392 (64.80%), Postives = 302/392 (77.04%), Query Frame = 1


Query: 133 MENELVELFEAAKKAAD-----AAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQV 192
           ME +L+ELF+A KK+AD     AA A S DGGAEES CL+A  QL  FPVT+QILVSTQV
Sbjct: 1   MEKDLLELFDAVKKSADPRKERAAPATSCDGGAEESECLEAFEQLNNFPVTHQILVSTQV 60

Query: 193 GKRLRHLTKHPKKKIQNYASDLIEIWKEIVIKDTNKNKKNGNIDCEESPKIGSPSAESVK 252
           GKRLRHLTKHP+KKIQ+ AS L+E WKEIV+ +  KN KNGN++  +S K  SP A+S +
Sbjct: 61  GKRLRHLTKHPRKKIQSVASGLLEKWKEIVMSEVGKNVKNGNLERIDSLKRDSPRADSPR 120

Query: 253 VEKFRKSSSMKVERVS-----QVEQFDRNGVTSSAKFSRS-----ESDISGKNPVKVEKT 312
            EK +K+S++ VE+VS     +V++ DR+   SS K   S     E  +   NPVK EK 
Sbjct: 121 PEKVQKTSAVNVEKVSKAEPVEVKKVDRDAKPSSEKAYSSGTIKTERKVQNVNPVKTEKA 180

Query: 313 DSV--VKVERIVKEEKRISIEKKPSSGPDAPPKLTSMIKSKDAARDKIRELLFEAFSKVP 372
            SV  VKVE++VK+ K      KP+     PPKLTSMIK  D ARDK+R LL EA SKV 
Sbjct: 181 ASVESVKVEKVVKDVK------KPALNSSDPPKLTSMIKCNDTARDKVRVLLHEALSKVS 240

Query: 373 SEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGSQKTKYRSIMFNLKDPKNPDFRRK 432
            E DE  +DEVNA+DPIRVAV+VESV+FENWGGSTGSQK KYRS++FNLKD KNPDFRRK
Sbjct: 241 EEGDERFVDEVNAADPIRVAVTVESVLFENWGGSTGSQKAKYRSLIFNLKDQKNPDFRRK 300

Query: 433 VLLGLIKPERLINMSTADMASDQRKRENEEIEQKALFDCERAGAPKATTDQFKCGRCGQR 492
           VLLG IK ERL+++STA+MASDQR+ EN+++EQKALF+CER GAPKATTDQFKCGRCGQR
Sbjct: 301 VLLGHIKAERLVDLSTAEMASDQRQEENQKLEQKALFECERGGAPKATTDQFKCGRCGQR 360

Query: 493 KTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 508
           KTTYYQ+QTRSADEPMTT+VTCVNCNN WKFC
Sbjct: 361 KTTYYQMQTRSADEPMTTYVTCVNCNNRWKFC 386

The following BLAST results are available for this feature:

BLAST of CmoCh15G001820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RDO2_ARATH	2.7e-107	56.66	Transcription elongation factor TFIIS OS=Arabidopsis thaliana GN=TFIIS PE=1 SV=1	[more]
TFS2_DROME	3.8e-29	30.38	Transcription elongation factor S-II OS=Drosophila melanogaster GN=TfIIS PE=2 SV...	[more]
TCEA3_BOVIN	5.0e-29	31.32	Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3 PE=2 SV=1	[more]
TCEA3_MOUSE	1.9e-28	29.50	Transcription elongation factor A protein 3 OS=Mus musculus GN=Tcea3 PE=1 SV=3	[more]
TFS2_SCHPO	1.6e-27	36.12	Transcription elongation factor S-II OS=Schizosaccharomyces pombe (strain 972 / ...	[more]

BLAST of CmoCh15G001820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDH9_CUCSA	4.6e-183	89.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014610 PE=4 SV=1	[more]
M5X6N8_PRUPE	8.5e-129	66.15	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007172mg PE=4 SV=1	[more]
I1JYC9_SOYBN	2.0e-125	66.58	Uncharacterized protein OS=Glycine max GN=GLYMA_04G223500 PE=4 SV=1	[more]
F6GXW2_VITVI	1.3e-124	65.88	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0058g01410 PE=4 SV=...	[more]
C6TBG6_SOYBN	4.8e-124	66.23	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]

BLAST of CmoCh15G001820 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G38560.1	1.5e-108	56.66	transcript elongation factor IIS	[more]
AT2G42730.1	2.1e-22	47.24	F-box family protein	[more]
AT4G18720.1	1.4e-21	52.25	Transcription factor IIS protein	[more]
AT5G42325.1	4.0e-13	37.50	Transcription factor IIS protein	[more]
AT2G33090.1	2.7e-09	40.00	Transcription elongation factor (TFIIS) family protein	[more]

BLAST of CmoCh15G001820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441244\|ref\|XP_004138392.1\|	6.6e-183	89.87	PREDICTED: transcription elongation factor S-II [Cucumis sativus]	[more]
gi\|659113848\|ref\|XP_008456781.1\|	1.5e-182	89.60	PREDICTED: transcription elongation factor S-II [Cucumis melo]	[more]
gi\|596048603\|ref\|XP_007220400.1\|	1.2e-128	66.15	hypothetical protein PRUPE_ppa007172mg [Prunus persica]	[more]
gi\|645256911\|ref\|XP_008234168.1\|	3.6e-128	66.15	PREDICTED: transcription elongation factor S-II [Prunus mume]	[more]
gi\|694369676\|ref\|XP_009362783.1\|	3.0e-127	64.80	PREDICTED: LOW QUALITY PROTEIN: transcription elongation factor S-II-like [Pyrus...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001222	Znf_TFIIS
IPR003617	TFIIS/CRSP70_N_sub
IPR003618	TFIIS_cen_dom
IPR006289	TFSII
IPR017923	TFIIS_N

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032784	regulation of DNA-templated transcription, elongation
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G001820.1	CmoCh15G001820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001222	Zinc finger, TFIIS-type	PFAM	PF01096	TFIIS_C	coord: 467..505 score: 1.7
IPR001222	Zinc finger, TFIIS-type	SMART	SM00440	Cys4_2	coord: 467..506 score: 9.7
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS00466	ZF_TFIIS_1	coord: 469..504 scor
IPR001222	Zinc finger, TFIIS-type	PROFILE	PS51133	ZF_TFIIS_2	coord: 465..505 score: 14
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 140..219 score: 5.2
IPR003618	Transcription elongation factor S-II, central domain	GENE3D	G3DSA:1.10.472.30		coord: 326..438 score: 1.9
IPR003618	Transcription elongation factor S-II, central domain	PFAM	PF07500	TFIIS_M	coord: 337..453 score: 3.6
IPR003618	Transcription elongation factor S-II, central domain	SMART	SM00510	mid_6	coord: 337..445 score: 2.1
IPR003618	Transcription elongation factor S-II, central domain	PROFILE	PS51321	TFIIS_CENTRAL	coord: 339..462 score: 35
IPR003618	Transcription elongation factor S-II, central domain	unknown	SSF46942	Elongation factor TFIIS domain 2	coord: 323..437 score: 1.31
IPR006289	Transcription elongation factor, TFIIS	TIGRFAMs	TIGR01385	TIGR01385	coord: 144..507 score: 2.5
IPR017923	Transcription factor IIS, N-terminal	GENE3D	G3DSA:1.20.930.10		coord: 133..227 score: 7.3
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 168..217 score: 2.3
IPR017923	Transcription factor IIS, N-terminal	PROFILE	PS51319	TFIIS_N	coord: 142..220 score: 19
IPR017923	Transcription factor IIS, N-terminal	unknown	SSF47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 159..228 score: 5.75
None	No IPR available	GENE3D	G3DSA:2.20.25.10		coord: 440..507 score: 1.0
None	No IPR available	PANTHER	PTHR11477	TRANSCRIPTION ELONGATION FACTOR S-II	coord: 164..237 score: 4.5E-119coord: 291..507 score: 4.5E
None	No IPR available	unknown	SSF57783	Zinc beta-ribbon	coord: 446..505 score: 2.35

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G001820	Cucsa.325950	Cucumber (Gy14) v1	cgycmoB0900
CmoCh15G001820	CmaCh15G001720	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G001820	Cla016427	Watermelon (97103) v1	cmowmB275
CmoCh15G001820	Csa6G014610	Cucumber (Chinese Long) v2	cmocuB296
CmoCh15G001820	MELO3C020014	Melon (DHL92) v3.5.1	cmomeB263
CmoCh15G001820	ClCG11G005630	Watermelon (Charleston Gray)	cmowcgB240
CmoCh15G001820	CSPI06G02210	Wild cucumber (PI 183967)	cmocpiB305
CmoCh15G001820	Lsi03G002580	Bottle gourd (USVL1VR-Ls)	cmolsiB265
CmoCh15G001820	Cp4.1LG01g21980	Cucurbita pepo (Zucchini)	cmocpeB279
CmoCh15G001820	Cp4.1LG13g07530	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G001820	MELO3C020014.2	Melon (DHL92) v3.6.1	cmomedB298
CmoCh15G001820	CsaV3_6G002350	Cucumber (Chinese Long) v3	cmocucB0358
CmoCh15G001820	Cla97C11G212560	Watermelon (97103) v2	cmowmbB278
CmoCh15G001820	Bhi04G001817	Wax gourd	cmowgoB0391
CmoCh15G001820	Carg05937	Silver-seed gourd	carcmoB0031
CmoCh15G001820	Carg02161	Silver-seed gourd	carcmoB0362

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G001820	Cucurbita maxima (Rimu)	cmacmoB642
CmoCh15G001820	Cucurbita maxima (Rimu)	cmacmoB692
CmoCh15G001820	Wild cucumber (PI 183967)	cmocpiB286
CmoCh15G001820	Watermelon (Charleston Gray)	cmowcgB252
CmoCh15G001820	Watermelon (97103) v1	cmowmB273
CmoCh15G001820	Cucurbita pepo (Zucchini)	cmocpeB265
CmoCh15G001820	Bottle gourd (USVL1VR-Ls)	cmolsiB259
CmoCh15G001820	Cucumber (Gy14) v2	cgybcmoB461
CmoCh15G001820	Cucumber (Gy14) v2	cgybcmoB722
CmoCh15G001820	Melon (DHL92) v3.6.1	cmomedB311
CmoCh15G001820	Cucumber (Chinese Long) v3	cmocucB0334
CmoCh15G001820	Watermelon (97103) v2	cmowmbB285
CmoCh15G001820	Wax gourd	cmowgoB0392
CmoCh15G001820	Cucurbita moschata (Rifu)	cmocmoB253
CmoCh15G001820	Cucurbita moschata (Rifu)	cmocmoB261
CmoCh15G001820	Cucumber (Gy14) v1	cgycmoB0348