Csa5G647300 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G647300
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRING finger family protein; contains IPR013083 (Zinc finger, RING/FYVE/PHD-type)
LocationChr5 : 27310592 .. 27312943 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCCAATTTCTTTTGCCACCTAACTTCCTTTCCTTCTTTATTTGGCTCTTCAAAACCAAACATTGCCCTTTGGCCGCATTTTAGTTTCTTGTTTCTTTAATTTTCTCACTCTCATTGCTACTTTTTCTACTGATTTTTCTTCTTATTTGTGTTGGGTTCGATTGATTTAATCTAATCTATCACCCCATTTTGTTGAAATTCGTTGGATGCGTCTAGATTTGCACTGTTAATGCCTCCATTTTATTTCCTGTAGTATACTGATTTTACTGTTGGAGGTTTTAAGCACATTGTTTACTCTTTCCTTCTTGTTTTTCTGGATCTGGGTGTTGCTGATTTGTGTTAATTTAGGTGAATTTTTCTGTTTTGGCTTCTGGGTTTTTACCAAAACTTCAAATTACTTCCGGGTTTGTAAGATCTAAGTACATTAGTGGGGGTTTTTGTCAAAATGGCTTATGATCATTTGGATCCATCTAAAAGCTATACAGTTGCTTCAGGGCCAGGTTCTGCTTCAAAGCCTGCACCTGAATTGAAGGTTTATCAGTTTTTTGTGTTCTGTATTCCAATTCTTTTCACGTTCATTCTTCTTTTCCTTTTCTATCTCCTTTACCTTCGTCGACGAAGGGCCGATTGGACTTCGATTCGAATGCGAACTTCAGCTGCTGCTAATAACAATAACATCTCTACAGTATGTTCTTTTCTTTTCTTTGTCTTTGCTTTCTCAATTGTTTTTAAAGTCTATAGAATGATTTTGTGTGCGTTTTTATTTATTTAATGATTTTGTATGTTCCCTTGTTTTTGTGGTTGAGCAGTCTGAAGTTGGGTTGAAGAAGGAGTTCAGAGAGATGCTTCCTATCATTGTATACAATGAGACATTCTTTGTCACTGATACACTGTGAGTGGATTCTTTCTTATGTTTGTCCAGTGTATTTTGGTAAAAGGATAATTTTATTTTGAAGGCATAGTATATGTGTTCTTGTTATTTGGTTAGCCTTATTTTTTTGTTAAGTCTTGTACGTGAACTTGGAATGAATTGAAGAGATCTTGAATGAGCATCAAGTTAGGAGATCTTGCACTCCAGCTTTGGGTTTCTATTTAAAATTGTTGCTTTTTTTTTTTAATCTACTCTTTACCAATGTATTTTTTCAATTTCATTTTTCCTTTTTTAACAATGGTTCGAGTGGGTTGCGACGCGTTTGAAATTTGAATGAAGGATGGAGCTTTAAATCAACTGATTTAATTATGTATTCATTTGATTTGGATCAAGAAAATATAGAATATTTGTGTTGGTTGCCTCAATTATATATTCATTTGATTCTTAGTGTAGTAGCCCTTTATGATGTGAATCCTTGTGTTGGTTGGCTCGACTAAAAATATTGATCTACTTCAATGGAGACTAAGAAGATTAAAAGATTATGAAAAGTGATTCATGAATTTAGAGAAAAGAAGAGTTGGGTGATGATCATCAAAGGCATGCAGCCAATGTTTTGTTAAGCCTTTCTTGAAAGAGCCATCAATCCTTATGTGTTTGTTTTTGTTGGTTTCAGATGTTCAGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAAATACCAACTTGTGGACATGTATTTCACATGGACTGCATTGATCATTGGCTAGCCAACCACAACACTTGCCCACTCTGCCGTCTCTCCGTCCTCTCACCGTCGTCTCAACCACCACATATTCAGATCGACATGGGACATGACGAACCACAATGCGAAGAACCACCTCCTCCACATAGTAATCAAGCTTGTCAACATACAACACCTCCAGTGTAAGAACCAAAAGCCATAATTGGAGTTTTCAAGGGGGAGGAATCATTCATTGCTGCAGCAATTAAAAAGGAATGCAACATTGGATAATTCATCGAGAGAGAACAATTCCAAGGCACAAATCAGGACGTAATGGCTTGTTTGTTTGGGAGGCTGATGGGTTTGTAATGGCTTGTATGTAACTCCAAGCCCACGTTTGACCGTTCGATCGCGAATTACCGACACTAACCTCCCAGTTTTTAGAACAGAAACATGTAGTTTGTTGTGGTAATTGTGTTCACCCCAAGTGCTGTAACGTTTGAAGACTGATGTGATGAGGATCATGAAATTTCAAAGTAGTTTGTTGTTCCATCTCCAAATAGATGAGGAAGCACTTCTTGTTAGAAAAATGGCTTCACCACATTCCTTTTTTTTTCTTTCTTTTCATTTTTGTTAAAAGTTATTTGACAAAGACTTTGTTGTTGTGGCCATTCTGTCTTAATTGACCCTACAAAAGGCAGACATGTAATCTATGAATTCATAGTATATAATAACATATCTAAATTGTGATA

mRNA sequence

ATGGCTTATGATCATTTGGATCCATCTAAAAGCTATACAGTTGCTTCAGGGCCAGGTTCTGCTTCAAAGCCTGCACCTGAATTGAAGGTTTATCAGTTTTTTGTGTTCTGTATTCCAATTCTTTTCACGTTCATTCTTCTTTTCCTTTTCTATCTCCTTTACCTTCGTCGACGAAGGGCCGATTGGACTTCGATTCGAATGCGAACTTCAGCTGCTGCTAATAACAATAACATCTCTACATCTGAAGTTGGGTTGAAGAAGGAGTTCAGAGAGATGCTTCCTATCATTGTATACAATGAGACATTCTTTGTCACTGATACACTATGTTCAGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAAATACCAACTTGTGGACATGTATTTCACATGGACTGCATTGATCATTGGCTAGCCAACCACAACACTTGCCCACTCTGCCGTCTCTCCGTCCTCTCACCGTCGTCTCAACCACCACATATTCAGATCGACATGGGACATGACGAACCACAATGCGAAGAACCACCTCCTCCACATAGTAATCAAGCTTGTCAACATACAACACCTCCAGTGTAA

Coding sequence (CDS)

ATGGCTTATGATCATTTGGATCCATCTAAAAGCTATACAGTTGCTTCAGGGCCAGGTTCTGCTTCAAAGCCTGCACCTGAATTGAAGGTTTATCAGTTTTTTGTGTTCTGTATTCCAATTCTTTTCACGTTCATTCTTCTTTTCCTTTTCTATCTCCTTTACCTTCGTCGACGAAGGGCCGATTGGACTTCGATTCGAATGCGAACTTCAGCTGCTGCTAATAACAATAACATCTCTACATCTGAAGTTGGGTTGAAGAAGGAGTTCAGAGAGATGCTTCCTATCATTGTATACAATGAGACATTCTTTGTCACTGATACACTATGTTCAGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAAATACCAACTTGTGGACATGTATTTCACATGGACTGCATTGATCATTGGCTAGCCAACCACAACACTTGCCCACTCTGCCGTCTCTCCGTCCTCTCACCGTCGTCTCAACCACCACATATTCAGATCGACATGGGACATGACGAACCACAATGCGAAGAACCACCTCCTCCACATAGTAATCAAGCTTGTCAACATACAACACCTCCAGTGTAA

Protein sequence

MAYDHLDPSKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQIDMGHDEPQCEEPPPPHSNQACQHTTPPV*
Homology
[Close]
BLAST of Csa5G647300 vs. Swiss-Prot
Match: ATL58_ARATH (RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.5e-45
Identity = 97/195 (49.74%), Postives = 123/195 (63.08%), Query Frame = 1 

Query: 20  SASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAANNNNIS 79
           SA+  +PELK+YQ F+F +PI FTFI+LFLFYL+YLRR  +D +S+ MRT+    N+ +S
Sbjct: 12  SAATSSPELKLYQAFIFSVPICFTFIILFLFYLIYLRRSSSDLSSLGMRTTFIPGNS-LS 71

Query: 80  TSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPTCGHVFHMDCIDH 139
           T E+GL KE REMLPI+V+ E+F V D+ CSVCLG+Y+  DKLQ+IP C H FHMDCID 
Sbjct: 72  TIELGLSKELREMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDL 131

Query: 140 WLANHNTCPLCRL----------------SVLSP----SSQPPHIQIDMGHDEPQCEEPP 195
           WL +H TCPLCRL                S++SP    SSQP    ++      Q E  P
Sbjct: 132 WLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSPDEEVSSQPESEPVNHRVVSTQPESEP 191

[Close]
BLAST of Csa5G647300 vs. Swiss-Prot
Match: ATL7_ARATH (RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.6e-44
Identity = 82/172 (47.67%), Postives = 117/172 (68.02%), Query Frame = 1 

Query: 7   DPSKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRR---RADWT 66
           DP+++    +   S S  + +LK+YQ F+F +PI FTFI+LF+ Y++YLRR      DW+
Sbjct: 5   DPNQNPIPETYAPSNSTESEKLKLYQAFIFSVPICFTFIVLFVLYVIYLRRNSTTNVDWS 64

Query: 67  SIRMRTSA-AANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKL 126
           S+ MR       NNN+ST+E+GL K+ REMLP+++Y E+F V D+ CSVCLG+Y+ E+KL
Sbjct: 65  SLGMRGGTFVPTNNNLSTAELGLSKDIREMLPVVIYKESFIVKDSQCSVCLGDYQAEEKL 124

Query: 127 QKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQIDMGHDEPQ 175
           Q++P+CGH FHM+CID WL +H TCPLCRLS++      P   +D+ H   +
Sbjct: 125 QQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLI------PKPSLDLSHQSTE 170

[Close]
BLAST of Csa5G647300 vs. Swiss-Prot
Match: ATL59_ARATH (E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.2e-35
Identity = 70/149 (46.98%), Postives = 100/149 (67.11%), Query Frame = 1 

Query: 27  ELKVYQF-FVFCIPILFTFILLFLFYLLYLRRRRA----DWTSIRMRTSAAANNNNISTS 86
           E ++ +F F+ C+PI    ++L +  +LY+ RR +    DW+S+         NNN+ST+
Sbjct: 16  ESQILKFTFIVCVPIC---VILIVLLVLYIMRRNSNTNVDWSSLG---GFVPTNNNLSTA 75

Query: 87  EVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPTCGHVFHMDCIDHWL 146
           E+GL K+ REMLPI++Y E+F V DT CSVCLG+Y+ E+KLQ++P+CGH FHM+CID WL
Sbjct: 76  ELGLSKDIREMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWL 135

Query: 147 ANHNTCPLCRLSVLSPSSQPPHIQIDMGH 171
            +H TCPLCRLS++      P   +D+ H
Sbjct: 136 TSHTTCPLCRLSLI------PKPSVDLSH 152

[Close]
BLAST of Csa5G647300 vs. Swiss-Prot
Match: RHA4A_ARATH (Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana GN=RHA4A PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.9e-29
Identity = 67/156 (42.95%), Postives = 98/156 (62.82%), Query Frame = 1 

Query: 25  APELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTS-----IRMRTSAAANNNNIS 84
           A +LK+YQ F+F IPILF+ IL  LFYL YL+RR +  +S     + + +S   +++  S
Sbjct: 16  AIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPSPMILPVSSSHQTSSHLPS 75

Query: 85  TSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPTCGHVFHMDCIDH 144
              + +K E ++ L ++++NE     D+LC VCLGE++ +++L ++P C H+FH+DCI  
Sbjct: 76  VCLLDVKVELKDKLHVVLFNEELGTRDSLCCVCLGEFELKEELVEMPLCKHIFHLDCIHL 135

Query: 145 WLANHNTCPLCRLSVLSPSSQPPHIQIDMGH-DEPQ 175
           WL +HNTCPLCR SV S SS    +  D  H D PQ
Sbjct: 136 WLYSHNTCPLCRSSV-SISSTKTSVDDDNDHPDSPQ 170

[Close]
BLAST of Csa5G647300 vs. Swiss-Prot
Match: ATL13_ARATH (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-15
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 1 

Query: 84  GLKKEFREMLPIIVYNETFFVTDTL--CSVCLGEYKTEDKLQKIPTCGHVFHMDCIDHWL 143
           G+ + F + LP+  Y     + +    C+VCL E++TEDKL+ +P C H FHMDCID WL
Sbjct: 107 GVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL 166

Query: 144 ANHNTCPLCRLSVLSPSS 160
            +H+TCPLCR S+LS  S
Sbjct: 167 LSHSTCPLCRSSLLSDLS 184

[Close]
BLAST of Csa5G647300 vs. TrEMBL
Match: A0A0A0KVZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647300 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 5.6e-113
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1 

Query: 1   MAYDHLDPSKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRA 60
           MAYDHLDPSKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRA
Sbjct: 1   MAYDHLDPSKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRA 60

Query: 61  DWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120
           DWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED
Sbjct: 61  DWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120

Query: 121 KLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQIDMGHDEPQCEEPPP 180
           KLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQIDMGHDEPQCEEPPP
Sbjct: 121 KLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQIDMGHDEPQCEEPPP 180

Query: 181 PHSNQACQHTTPPV 195
           PHSNQACQHTTPPV
Sbjct: 181 PHSNQACQHTTPPV 194

[Close]
BLAST of Csa5G647300 vs. TrEMBL
Match: A0A0D2RD44_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G117800 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 9.1e-55
Identity = 104/158 (65.82%), Postives = 127/158 (80.38%), Query Frame = 1 

Query: 9   SKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMR 68
           S+S +V+    S+S  + ELK+YQ F+F +PI F FILLF+FYL YLRRRRADW+S+RMR
Sbjct: 3   SRSLSVSEPQTSSSSVSAELKLYQAFIFSVPIFFAFILLFMFYLFYLRRRRADWSSLRMR 62

Query: 69  TSAAANNN-NISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPT 128
           TS   +++ +IS +E+GLKKE REMLPII+Y ETF + DT CSVCLGEY+ EDKLQ+IP 
Sbjct: 63  TSPGPDSDLSISMAELGLKKEVREMLPIIIYKETFSIRDTQCSVCLGEYQAEDKLQQIPA 122

Query: 129 CGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQ 166
           CGH FHMDCIDHWLANH TCPLCRLSVL+ S + P IQ
Sbjct: 123 CGHTFHMDCIDHWLANHTTCPLCRLSVLASSDKLPVIQ 160

[Close]
BLAST of Csa5G647300 vs. TrEMBL
Match: A0A061FJ88_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_036069 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.8e-53
Identity = 110/193 (56.99%), Postives = 134/193 (69.43%), Query Frame = 1 

Query: 9   SKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMR 68
           SK     S   ++S  + ELK+YQ F+F +PI F FILLF+FYL YLRRRRADW+S+RMR
Sbjct: 14  SKQAGCCSSSTTSSAVSAELKLYQAFIFSVPIFFAFILLFMFYLFYLRRRRADWSSLRMR 73

Query: 69  TSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPTC 128
           T A  NNN++  +E+GLKKE REMLPII+Y ETF + D  CSVCLG+Y+ EDKLQ+IP C
Sbjct: 74  T-ALDNNNDLYMAELGLKKEVREMLPIIIYKETFSIRDAQCSVCLGDYQAEDKLQQIPAC 133

Query: 129 GHVFHMDCIDHWLANHNTCPLCRLSVLS---PSSQPPHIQIDMGHDEPQCEEPPPPHSN- 188
           GH FHMDCIDHWLANH TCPLCRLSVL+    S + P IQ + G      E   P +SN 
Sbjct: 134 GHTFHMDCIDHWLANHTTCPLCRLSVLASPKASDKLPVIQAENGQ-----ESSHPENSNG 193

Query: 189 -------QACQHT 191
                  Q+C+ T
Sbjct: 194 SSVQPMSQSCEET 200

[Close]
BLAST of Csa5G647300 vs. TrEMBL
Match: M5VMK2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010460mg PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.5e-53
Identity = 107/198 (54.04%), Postives = 139/198 (70.20%), Query Frame = 1 

Query: 1   MAYDHLDPSKSYTVASGPGSASKPAP--ELKVYQFFVFCIPILFTFILLFLFYLLYLRRR 60
           M+Y+H+ P +    +S   S SK +P  + K+YQFFVFC+PI FTFILLF+FYL YLR R
Sbjct: 1   MSYNHVYP-RCCLNSSDSSSKSKESPSGQFKLYQFFVFCVPIFFTFILLFVFYLFYLRPR 60

Query: 61  RADWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKT 120
           R +W+S+RM TS   NN+ I+T E+GLKKE REMLPIIVY E+F V DT CSVCLG+Y+ 
Sbjct: 61  RVNWSSLRMTTSPQINND-IATVELGLKKELREMLPIIVYKESFSVRDTQCSVCLGDYQA 120

Query: 121 EDKLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLS---PSSQPPHIQIDMGHDEPQC 180
           ED+LQ+IP C H FH+DCID WL+ H+TCPLCRLS+LS     ++ P + ++  H+    
Sbjct: 121 EDRLQQIPACAHTFHIDCIDSWLSTHSTCPLCRLSLLSSHKSQNESPDVPVESSHEYSVA 180

Query: 181 EE---PPPPHSNQACQHT 191
           E     P P   QAC+ T
Sbjct: 181 ENNFVTPLPQMPQACEET 196

[Close]
BLAST of Csa5G647300 vs. TrEMBL
Match: A0A0B0P8F2_GOSAR (RING-H2 finger ATL7-like protein OS=Gossypium arboreum GN=F383_24638 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.2e-51
Identity = 99/155 (63.87%), Postives = 122/155 (78.71%), Query Frame = 1 

Query: 9   SKSYTVASGPGS-ASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRM 68
           S+S +V+    S +S  + ELK+YQ F+F +PI F FILLF+FYL YLRRRRADW+S+RM
Sbjct: 3   SRSLSVSEPQNSPSSSVSAELKLYQAFIFSVPIFFAFILLFMFYLFYLRRRRADWSSLRM 62

Query: 69  RTSAAANNN-NISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIP 128
           RTS    ++ +IS +E+GLKKE REMLPII+Y ETF + DT C++CLGEY+ EDKLQ+IP
Sbjct: 63  RTSPGPYSDLSISMAELGLKKEVREMLPIIIYKETFSIRDTQCAICLGEYQAEDKLQQIP 122

Query: 129 TCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQP 162
            CGH FHMDCIDHWLANH TCPLCRLSVL+    P
Sbjct: 123 ACGHTFHMDCIDHWLANHTTCPLCRLSVLTSDKLP 157

[Close]
BLAST of Csa5G647300 vs. TAIR10
Match: AT1G33480.1 (AT1G33480.1 RING/U-box superfamily protein)

HSP 1 Score: 184.1 bits (466), Expect = 8.2e-47
Identity = 97/195 (49.74%), Postives = 123/195 (63.08%), Query Frame = 1 

Query: 20  SASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAANNNNIS 79
           SA+  +PELK+YQ F+F +PI FTFI+LFLFYL+YLRR  +D +S+ MRT+    N+ +S
Sbjct: 12  SAATSSPELKLYQAFIFSVPICFTFIILFLFYLIYLRRSSSDLSSLGMRTTFIPGNS-LS 71

Query: 80  TSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPTCGHVFHMDCIDH 139
           T E+GL KE REMLPI+V+ E+F V D+ CSVCLG+Y+  DKLQ+IP C H FHMDCID 
Sbjct: 72  TIELGLSKELREMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDL 131

Query: 140 WLANHNTCPLCRL----------------SVLSP----SSQPPHIQIDMGHDEPQCEEPP 195
           WL +H TCPLCRL                S++SP    SSQP    ++      Q E  P
Sbjct: 132 WLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSPDEEVSSQPESEPVNHRVVSTQPESEP 191

[Close]
BLAST of Csa5G647300 vs. TAIR10
Match: AT4G10150.1 (AT4G10150.1 RING/U-box superfamily protein)

HSP 1 Score: 179.5 bits (454), Expect = 2.0e-45
Identity = 82/172 (47.67%), Postives = 117/172 (68.02%), Query Frame = 1 

Query: 7   DPSKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRR---RADWT 66
           DP+++    +   S S  + +LK+YQ F+F +PI FTFI+LF+ Y++YLRR      DW+
Sbjct: 5   DPNQNPIPETYAPSNSTESEKLKLYQAFIFSVPICFTFIVLFVLYVIYLRRNSTTNVDWS 64

Query: 67  SIRMRTSA-AANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKL 126
           S+ MR       NNN+ST+E+GL K+ REMLP+++Y E+F V D+ CSVCLG+Y+ E+KL
Sbjct: 65  SLGMRGGTFVPTNNNLSTAELGLSKDIREMLPVVIYKESFIVKDSQCSVCLGDYQAEEKL 124

Query: 127 QKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQIDMGHDEPQ 175
           Q++P+CGH FHM+CID WL +H TCPLCRLS++      P   +D+ H   +
Sbjct: 125 QQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLI------PKPSLDLSHQSTE 170

[Close]
BLAST of Csa5G647300 vs. TAIR10
Match: AT4G10160.1 (AT4G10160.1 RING/U-box superfamily protein)

HSP 1 Score: 149.1 bits (375), Expect = 2.9e-36
Identity = 70/149 (46.98%), Postives = 100/149 (67.11%), Query Frame = 1 

Query: 27  ELKVYQF-FVFCIPILFTFILLFLFYLLYLRRRRA----DWTSIRMRTSAAANNNNISTS 86
           E ++ +F F+ C+PI    ++L +  +LY+ RR +    DW+S+         NNN+ST+
Sbjct: 16  ESQILKFTFIVCVPIC---VILIVLLVLYIMRRNSNTNVDWSSLG---GFVPTNNNLSTA 75

Query: 87  EVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPTCGHVFHMDCIDHWL 146
           E+GL K+ REMLPI++Y E+F V DT CSVCLG+Y+ E+KLQ++P+CGH FHM+CID WL
Sbjct: 76  ELGLSKDIREMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWL 135

Query: 147 ANHNTCPLCRLSVLSPSSQPPHIQIDMGH 171
            +H TCPLCRLS++      P   +D+ H
Sbjct: 136 TSHTTCPLCRLSLI------PKPSVDLSH 152

[Close]
BLAST of Csa5G647300 vs. TAIR10
Match: AT4G24015.1 (AT4G24015.1 RING/U-box superfamily protein)

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-30
Identity = 67/156 (42.95%), Postives = 98/156 (62.82%), Query Frame = 1 

Query: 25  APELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTS-----IRMRTSAAANNNNIS 84
           A +LK+YQ F+F IPILF+ IL  LFYL YL+RR +  +S     + + +S   +++  S
Sbjct: 16  AIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPSPMILPVSSSHQTSSHLPS 75

Query: 85  TSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPTCGHVFHMDCIDH 144
              + +K E ++ L ++++NE     D+LC VCLGE++ +++L ++P C H+FH+DCI  
Sbjct: 76  VCLLDVKVELKDKLHVVLFNEELGTRDSLCCVCLGEFELKEELVEMPLCKHIFHLDCIHL 135

Query: 145 WLANHNTCPLCRLSVLSPSSQPPHIQIDMGH-DEPQ 175
           WL +HNTCPLCR SV S SS    +  D  H D PQ
Sbjct: 136 WLYSHNTCPLCRSSV-SISSTKTSVDDDNDHPDSPQ 170

[Close]
BLAST of Csa5G647300 vs. TAIR10
Match: AT4G30400.1 (AT4G30400.1 RING/U-box superfamily protein)

HSP 1 Score: 84.3 bits (207), Expect = 8.8e-17
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 1 

Query: 84  GLKKEFREMLPIIVYNETFFVTDTL--CSVCLGEYKTEDKLQKIPTCGHVFHMDCIDHWL 143
           G+ + F + LP+  Y     + +    C+VCL E++TEDKL+ +P C H FHMDCID WL
Sbjct: 107 GVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL 166

Query: 144 ANHNTCPLCRLSVLSPSS 160
            +H+TCPLCR S+LS  S
Sbjct: 167 LSHSTCPLCRSSLLSDLS 184

[Close]
BLAST of Csa5G647300 vs. NCBI nr
Match: gi|449447531|ref|XP_004141521.1| (PREDICTED: RING-H2 finger protein ATL58 [Cucumis sativus])

HSP 1 Score: 414.8 bits (1065), Expect = 8.1e-113
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1 

Query: 1   MAYDHLDPSKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRA 60
           MAYDHLDPSKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRA
Sbjct: 1   MAYDHLDPSKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRA 60

Query: 61  DWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120
           DWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED
Sbjct: 61  DWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120

Query: 121 KLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQIDMGHDEPQCEEPPP 180
           KLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQIDMGHDEPQCEEPPP
Sbjct: 121 KLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQIDMGHDEPQCEEPPP 180

Query: 181 PHSNQACQHTTPPV 195
           PHSNQACQHTTPPV
Sbjct: 181 PHSNQACQHTTPPV 194

[Close]
BLAST of Csa5G647300 vs. NCBI nr
Match: gi|659119165|ref|XP_008459509.1| (PREDICTED: RING-H2 finger protein ATL7 [Cucumis melo])

HSP 1 Score: 394.8 bits (1013), Expect = 8.6e-107
Identity = 186/197 (94.42%), Postives = 189/197 (95.94%), Query Frame = 1 

Query: 1   MAYDHLDPSKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRA 60
           M YDHLD SKSY+VASGPGS SKPAPELK+YQF VFCIPILFTFILLFLFYLLYLRRRRA
Sbjct: 1   MTYDHLDRSKSYSVASGPGSVSKPAPELKLYQFVVFCIPILFTFILLFLFYLLYLRRRRA 60

Query: 61  DWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120
           DWTSIRMRTSAAA NNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED
Sbjct: 61  DWTSIRMRTSAAATNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120

Query: 121 KLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQIDMGH---DEPQCEE 180
           KLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLS+LSPSSQPPHIQIDMGH   DEPQCEE
Sbjct: 121 KLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSILSPSSQPPHIQIDMGHESSDEPQCEE 180

Query: 181 PPPPHSNQACQHTTPPV 195
           PPPPHSNQACQHTTPPV
Sbjct: 181 PPPPHSNQACQHTTPPV 197

[Close]
BLAST of Csa5G647300 vs. NCBI nr
Match: gi|763762505|gb|KJB29759.1| (hypothetical protein B456_005G117800 [Gossypium raimondii])

HSP 1 Score: 221.5 bits (563), Expect = 1.3e-54
Identity = 104/158 (65.82%), Postives = 127/158 (80.38%), Query Frame = 1 

Query: 9   SKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMR 68
           S+S +V+    S+S  + ELK+YQ F+F +PI F FILLF+FYL YLRRRRADW+S+RMR
Sbjct: 3   SRSLSVSEPQTSSSSVSAELKLYQAFIFSVPIFFAFILLFMFYLFYLRRRRADWSSLRMR 62

Query: 69  TSAAANNN-NISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPT 128
           TS   +++ +IS +E+GLKKE REMLPII+Y ETF + DT CSVCLGEY+ EDKLQ+IP 
Sbjct: 63  TSPGPDSDLSISMAELGLKKEVREMLPIIIYKETFSIRDTQCSVCLGEYQAEDKLQQIPA 122

Query: 129 CGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQ 166
           CGH FHMDCIDHWLANH TCPLCRLSVL+ S + P IQ
Sbjct: 123 CGHTFHMDCIDHWLANHTTCPLCRLSVLASSDKLPVIQ 160

[Close]
BLAST of Csa5G647300 vs. NCBI nr
Match: gi|590602457|ref|XP_007019758.1| (RING/U-box superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 216.1 bits (549), Expect = 5.5e-53
Identity = 110/193 (56.99%), Postives = 134/193 (69.43%), Query Frame = 1 

Query: 9   SKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMR 68
           SK     S   ++S  + ELK+YQ F+F +PI F FILLF+FYL YLRRRRADW+S+RMR
Sbjct: 14  SKQAGCCSSSTTSSAVSAELKLYQAFIFSVPIFFAFILLFMFYLFYLRRRRADWSSLRMR 73

Query: 69  TSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPTC 128
           T A  NNN++  +E+GLKKE REMLPII+Y ETF + D  CSVCLG+Y+ EDKLQ+IP C
Sbjct: 74  T-ALDNNNDLYMAELGLKKEVREMLPIIIYKETFSIRDAQCSVCLGDYQAEDKLQQIPAC 133

Query: 129 GHVFHMDCIDHWLANHNTCPLCRLSVLS---PSSQPPHIQIDMGHDEPQCEEPPPPHSN- 188
           GH FHMDCIDHWLANH TCPLCRLSVL+    S + P IQ + G      E   P +SN 
Sbjct: 134 GHTFHMDCIDHWLANHTTCPLCRLSVLASPKASDKLPVIQAENGQ-----ESSHPENSNG 193

Query: 189 -------QACQHT 191
                  Q+C+ T
Sbjct: 194 SSVQPMSQSCEET 200

[Close]
BLAST of Csa5G647300 vs. NCBI nr
Match: gi|595797076|ref|XP_007201233.1| (hypothetical protein PRUPE_ppa010460mg [Prunus persica])

HSP 1 Score: 214.9 bits (546), Expect = 1.2e-52
Identity = 107/198 (54.04%), Postives = 139/198 (70.20%), Query Frame = 1 

Query: 1   MAYDHLDPSKSYTVASGPGSASKPAP--ELKVYQFFVFCIPILFTFILLFLFYLLYLRRR 60
           M+Y+H+ P +    +S   S SK +P  + K+YQFFVFC+PI FTFILLF+FYL YLR R
Sbjct: 1   MSYNHVYP-RCCLNSSDSSSKSKESPSGQFKLYQFFVFCVPIFFTFILLFVFYLFYLRPR 60

Query: 61  RADWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKT 120
           R +W+S+RM TS   NN+ I+T E+GLKKE REMLPIIVY E+F V DT CSVCLG+Y+ 
Sbjct: 61  RVNWSSLRMTTSPQINND-IATVELGLKKELREMLPIIVYKESFSVRDTQCSVCLGDYQA 120

Query: 121 EDKLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLS---PSSQPPHIQIDMGHDEPQC 180
           ED+LQ+IP C H FH+DCID WL+ H+TCPLCRLS+LS     ++ P + ++  H+    
Sbjct: 121 EDRLQQIPACAHTFHIDCIDSWLSTHSTCPLCRLSLLSSHKSQNESPDVPVESSHEYSVA 180

Query: 181 EE---PPPPHSNQACQHT 191
           E     P P   QAC+ T
Sbjct: 181 ENNFVTPLPQMPQACEET 196

The following BLAST results are available for this feature:
BLAST of Csa5G647300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL58_ARATH1.5e-4549.74RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2 SV=1[more]
ATL7_ARATH3.6e-4447.67RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2 SV=1[more]
ATL59_ARATH5.2e-3546.98E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59 PE=1 SV=1[more]
RHA4A_ARATH1.9e-2942.95Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana GN=RHA4A PE=2... [more]
ATL13_ARATH1.6e-1548.72RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2[more]
BLAST of Csa5G647300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVZ9_CUCSA5.6e-113100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647300 PE=4 SV=1[more]
A0A0D2RD44_GOSRA9.1e-5565.82Uncharacterized protein OS=Gossypium raimondii GN=B456_005G117800 PE=4 SV=1[more]
A0A061FJ88_THECC3.8e-5356.99RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_036069 PE=4 S... [more]
M5VMK2_PRUPE8.5e-5354.04Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010460mg PE=4 SV=1[more]
A0A0B0P8F2_GOSAR1.2e-5163.87RING-H2 finger ATL7-like protein OS=Gossypium arboreum GN=F383_24638 PE=4 SV=1[more]
BLAST of Csa5G647300 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G33480.18.2e-4749.74 RING/U-box superfamily protein[more]
AT4G10150.12.0e-4547.67 RING/U-box superfamily protein[more]
AT4G10160.12.9e-3646.98 RING/U-box superfamily protein[more]
AT4G24015.11.1e-3042.95 RING/U-box superfamily protein[more]
AT4G30400.18.8e-1748.72 RING/U-box superfamily protein[more]
BLAST of Csa5G647300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449447531|ref|XP_004141521.1|8.1e-113100.00PREDICTED: RING-H2 finger protein ATL58 [Cucumis sativus][more]
gi|659119165|ref|XP_008459509.1|8.6e-10794.42PREDICTED: RING-H2 finger protein ATL7 [Cucumis melo][more]
gi|763762505|gb|KJB29759.1|1.3e-5465.82hypothetical protein B456_005G117800 [Gossypium raimondii][more]
gi|590602457|ref|XP_007019758.1|5.5e-5356.99RING/U-box superfamily protein, putative [Theobroma cacao][more]
gi|595797076|ref|XP_007201233.1|1.2e-5254.04hypothetical protein PRUPE_ppa010460mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU088431cucumber EST collection version 3.0transcribed_cluster
CU115431cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G647300.1Csa5G647300.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU088431CU088431transcribed_cluster
CU115431CU115431transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 109..151
score: 3.4
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 109..150
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 109..151
score: 1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 106..154
score: 1.2
NoneNo IPR availablePANTHERPTHR22765RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAININGcoord: 26..161
score: 5.7
NoneNo IPR availablePANTHERPTHR22765:SF29E3 UBIQUITIN-PROTEIN LIGASE ATL59-RELATEDcoord: 26..161
score: 5.7
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 93..161
score: 5.81