CmaCh09G012010 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G012010
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ring finger protein, putative
Location	Cma_Chr09 : 7827621 .. 7830072 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTATGATCATTTGGATCAATCTCCAGAACTGAAACTCTATCAGTTTTTTGTGTTCTGTGTTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTATCTTCTTTATCTTCGTCGACGAAGGGCGGATTGGAATTCTATTCGAATGCGAACATCTGATGCAGTGAACAACAATAACATATCTGCTGTATGAACTTCTCTTTGTGTGTGTTGTTTGGTTTGTTTTTGATTATTAATGATTTTGAACTTTCTTTGTTGTTGTGGTTGAGCAGTGTGATGTTGGGTTGACGAAGGAATTCAGGGAGATGCTTCCTATTATTGTGTACAATGAAACATTCTTTGTTACTGATACGCTGTGAGTGGATTTTTTTTCTCTTATGTTTGTTTGATGTATTTTGGTGAATGTTTGTACTCTAAGGGCATTTCTATAGGTACCATTAGCGGATTTTTGTTCGTGTTTTAGGGATGTTTTGAAGAGCTATCTTTTGTTTCGGGTATCTTGATATTTCCATAGGAAATAGTTTTGGGACGTGATATTTGAAGAAAAAGAGGTGATGTGTGAGATCTCTCATGGTGTGGAAACCTCTCTTTAGTAGACGCGTTTTAAGAACCTTGAGGGGAAGTCCGAAAGGGAAAGTCCAAAGAGGATAATATCTGTTAGCGGTGGGCTTGAGTTGTTACAAATGGTATCAGAGCCAGATACTGGGCGATGTATTAACGAGGAGGTTGAGCCTTGAAGGGGGTGGACACGAGGTAGTGTGTCAGTAAGGACGTTGGGCCCCTAAGGGGGTGGATTGGGGAGTCCCACATTGATTAGAGAAGGGAACGAGTGTTAGTGAGGACGCTGGGCCCTTGATCCCACATCGGTTGGGGAGGAGAATGAAACATCTTTTATAAGGGCGTGGAAATGTTTCCCTAGTAGACTCATTTTAAAATTTTTTAGGGAAATCCCAAAAAAGACAATATCGGTTAGTGGTGGACTTGGGTTGCAAATGGTATTAGAGTCAAACATCAGGCGATGTGCCAACAAGAAGGCTGAGCCCCGAAAGGGGGTGGACATGAGGCGGTGTGCCAGCAAGGACGTTGGGTCCCAAAGGGGGGTGGATTGGGGAGTCTCACATTGATTAGAGAAGGGAACGAGTGCTAACAAGGACGCTAAGCCCCAAATCCCACATCGGTTGGGGAGGAGAGCGAAACATCCTTTATAACGGTGTGGAAACTTCTCCCTAGCAGACACGTTTTAAAAACCTTGAGGGGAAACTTGAAAGGGAAAGCTCAAAAAAGACAATATCTACTACCGGTGGGCTTGGGTTGTTACATTATGACACTGTATACAAGAACTTCAAACCGAAACTCTAACGGGGTTGTTTATAGCACTAGACAAGTAAATTGAGTTACGGTCAATAGTTTTTGACAAACCCCAAAAATTGTTGCATACTCTGCCAATTTTCGGTTCATTTTATGTTGCGTTTCATGGGAGACTTTTTGTTCCTTTGTTAGGGTAGCTCTCATAAGCTACTATTTCCTCGATATGAATTTCGAAGAAAAAGAGCGGGTGACAATGTGTGAACTTCAAACCGAATTAGGCTCTGGATACTAAACCATACACGTCAAAATCATCAAATTTGACTATTCCTCACGATAGTGTCGAAAAATATCGCTATTTTTTTTCTGTTAATTCTCTCTATTCGGCCTCGTCTTGAGAGAGCAATCCTTATGTGTTTGTTGTTTGTGGCAGATGTTCAGTCTGTTTAGGGGAATACCAAACAGAAGATAAGCTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTATCCAACCACAGCACCTGCCCACTCTGCCGTCTCTCCGTCCTTTCTCCGTCGTCCCGACCACCGCACATACAGATTGAGATGGGACTCGAATCGACAAATGAGCAACGTCGCTAAGAAGCACCTCCTCAACATAGTAATCAAGCTTGTCAACATACAACACTTCCCGTGTGAGGTCATAATTCGAGTTTTCAATGGGAAAGAATCATTCAAAAAGGGATGCAACTTTGGATAATAATTCATCAAGAGAAGACGATCCGAGGGATCGGGAACTATCAATGCCACCGACCCGCATTTTAGCACAGGGATATAGTTTATGTAACATTCCAAGACTGGTCTATGAGGACCATGGCCTTTCAAAGTACATTGTTCTATCTCCCAACAGATCGCCCGTTCAGACTCACTGCTAATAGATATTGGCCTCTTTGAGTTTTCTCTTTCGGGCTTTCTTTCAAGGTTTTTAAAATGTGTATGCTAGAAAGAGGTTTTCACACCCTTATAAAAAATGCTTTATTCTTTTCCCTAATTGATGTGGGATCTCGTAGCACCAAAATTTTGTTCATGAGCATAATCTATGAGAAACAAGAAGCTGTCTTTACTTGTTATCTTTTG

mRNA sequence

ATGGGTTATGATCATTTGGATCAATCTCCAGAACTGAAACTCTATCAGTTTTTTGTGTTCTGTGTTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTATCTTCTTTATCTTCGTCGACGAAGGGCGGATTGGAATTCTATTCGAATGCGAACATCTGATGCAGTGAACAACAATAACATATCTGCTTGTGATGTTGGGTTGACGAAGGAATTCAGGGAGATGCTTCCTATTATTGTGTACAATGAAACATTCTTTGTTACTGATACGCTATGTTCAGTCTGTTTAGGGGAATACCAAACAGAAGATAAGCTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTATCCAACCACAGCACCTGCCCACTCTGCCGTCTCTCCGTCCTTTCTCCGTCGTCCCGACCACCGCACATACAGATTGAGATGGGACTCGAATCGACAAATGAGCAACGTCGCTAAGAAGCACCTCCTCAACATAGTAATCAAGCTTGTCAACATACAACACTTCCCGTGTGAGGTCATAATTCGAGTTTTCAATGGGAAAGAATCATTCAAAAAGGGATGCAACTTTGGATAATAATTCATCAAGAGAAGACGATCCGAGGGATCGGGAACTATCAATGCCACCGACCCGCATTTTAGCACAGGGATATAGTTTATGTAACATTCCAAGACTGGTCTATGAGGACCATGGCCTTTCAAAGTACATTGTTCTATCTCCCAACAGATCGCCCGTTCAGACTCACTGCTAATAGATATTGGCCTCTTTGAGTTTTCTCTTTCGGGCTTTCTTTCAAGGTTTTTAAAATGTGTATGCTAGAAAGAGGTTTTCACACCCTTATAAAAAATGCTTTATTCTTTTCCCTAATTGATGTGGGATCTCGTAGCACCAAAATTTTGTTCATGAGCATAATCTATGAGAAACAAGAAGCTGTCTTTACTTGTTATCTTTTG

Coding sequence (CDS)

ATGGGTTATGATCATTTGGATCAATCTCCAGAACTGAAACTCTATCAGTTTTTTGTGTTCTGTGTTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTATCTTCTTTATCTTCGTCGACGAAGGGCGGATTGGAATTCTATTCGAATGCGAACATCTGATGCAGTGAACAACAATAACATATCTGCTTGTGATGTTGGGTTGACGAAGGAATTCAGGGAGATGCTTCCTATTATTGTGTACAATGAAACATTCTTTGTTACTGATACGCTATGTTCAGTCTGTTTAGGGGAATACCAAACAGAAGATAAGCTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTATCCAACCACAGCACCTGCCCACTCTGCCGTCTCTCCGTCCTTTCTCCGTCGTCCCGACCACCGCACATACAGATTGAGATGGGACTCGAATCGACAAATGAGCAACGTCGCTAA

Protein sequence

MGYDHLDQSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNNNISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR

Homology

[Close]

BLAST of CmaCh09G012010 vs. Swiss-Prot
Match: ATL58_ARATH (RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 8.6e-44
Identity = 87/158 (55.06%), Postives = 115/158 (72.78%), Query Frame = 1


Query: 3   YDHLDQSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNNNI 62
           Y     SPELKLYQ F+F VPI FTFI+LFLFYL+YLRR  +D +S+ MRT+  +  N++
Sbjct: 11  YSAATSSPELKLYQAFIFSVPICFTFIILFLFYLIYLRRSSSDLSSLGMRTT-FIPGNSL 70

Query: 63  SACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCID 122
           S  ++GL+KE REMLPI+V+ E+F V D+ CSVCLG+YQ  DKLQ+IP C H FH+DCID
Sbjct: 71  STIELGLSKELREMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCID 130

Query: 123 HWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQ 161
            WL++H+TCPLCRL+++   SR         L S +E+
Sbjct: 131 LWLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSPDEE 167

[Close]

BLAST of CmaCh09G012010 vs. Swiss-Prot
Match: ATL7_ARATH (RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-42
Identity = 84/158 (53.16%), Postives = 118/158 (74.68%), Query Frame = 1


Query: 8   QSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRR---RADWNSIRMRTSDAV-NNNNIS 67
           +S +LKLYQ F+F VPI FTFI+LF+ Y++YLRR      DW+S+ MR    V  NNN+S
Sbjct: 22  ESEKLKLYQAFIFSVPICFTFIVLFVLYVIYLRRNSTTNVDWSSLGMRGGTFVPTNNNLS 81

Query: 68  ACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDH 127
             ++GL+K+ REMLP+++Y E+F V D+ CSVCLG+YQ E+KLQ++PSCGH FH++CID 
Sbjct: 82  TAELGLSKDIREMLPVVIYKESFIVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDL 141

Query: 128 WLSNHSTCPLCRLSVL-SPSSRPPH--IQIEMGLESTN 159
           WL++H+TCPLCRLS++  PS    H   +I   +E++N
Sbjct: 142 WLTSHTTCPLCRLSLIPKPSLDLSHQSTEIVSSIENSN 179

[Close]

BLAST of CmaCh09G012010 vs. Swiss-Prot
Match: ATL59_ARATH (E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-34
Identity = 76/158 (48.10%), Postives = 110/158 (69.62%), Query Frame = 1


Query: 9   SPELKLYQF-FVFCVPILFTFILLFLFYLLYLRRRRA----DWNSIRMRTSDAVNNNNIS 68
           S E ++ +F F+ CVPI    ++L +  +LY+ RR +    DW+S+         NNN+S
Sbjct: 14  STESQILKFTFIVCVPIC---VILIVLLVLYIMRRNSNTNVDWSSLG---GFVPTNNNLS 73

Query: 69  ACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDH 128
             ++GL+K+ REMLPI++Y E+F V DT CSVCLG+YQ E+KLQ++PSCGH FH++CID 
Sbjct: 74  TAELGLSKDIREMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDL 133

Query: 129 WLSNHSTCPLCRLSVL-SPSSRPPH--IQIEMGLESTN 159
           WL++H+TCPLCRLS++  PS    H  I+I   +E+TN
Sbjct: 134 WLTSHTTCPLCRLSLIPKPSVDLSHQSIEIVSSIENTN 165

[Close]

BLAST of CmaCh09G012010 vs. Swiss-Prot
Match: RHA4A_ARATH (Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana GN=RHA4A PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-27
Identity = 60/142 (42.25%), Postives = 95/142 (66.90%), Query Frame = 1


Query: 8   QSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNS-----IRMRTSDAVNNNNI 67
           Q+ +LKLYQ F+F +PILF+ IL  LFYL YL+RR +  +S     + + +S   +++  
Sbjct: 15  QAIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPSPMILPVSSSHQTSSHLP 74

Query: 68  SACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCID 127
           S C + +  E ++ L ++++NE     D+LC VCLGE++ +++L ++P C H+FHLDCI 
Sbjct: 75  SVCLLDVKVELKDKLHVVLFNEELGTRDSLCCVCLGEFELKEELVEMPLCKHIFHLDCIH 134

Query: 128 HWLSNHSTCPLCRLSVLSPSSR 145
            WL +H+TCPLCR SV   S++
Sbjct: 135 LWLYSHNTCPLCRSSVSISSTK 156

[Close]

BLAST of CmaCh09G012010 vs. Swiss-Prot
Match: ATL13_ARATH (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 4.0e-17
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 1


Query: 66  DVGLTKEFREMLPIIVYNETFFVTDTL--CSVCLGEYQTEDKLQKIPSCGHVFHLDCIDH 125
           D G+ + F + LP+  Y     + +    C+VCL E++TEDKL+ +P C H FH+DCID 
Sbjct: 105 DSGVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDT 164

Query: 126 WLSNHSTCPLCRLSVLS--PSSRPPHIQIEMGLESTNE 160
           WL +HSTCPLCR S+LS   S + P     + LES ++
Sbjct: 165 WLLSHSTCPLCRSSLLSDLSSHQDPRSSFLLVLESASD 202

[Close]

BLAST of CmaCh09G012010 vs. TrEMBL
Match: A0A0A0KVZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647300 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.3e-72
Identity = 135/169 (79.88%), Postives = 145/169 (85.80%), Query Frame = 1


Query: 1   MGYDHLDQS----------------PELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRA 60
           M YDHLD S                PELK+YQFFVFC+PILFTFILLFLFYLLYLRRRRA
Sbjct: 1   MAYDHLDPSKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRA 60

Query: 61  DWNSIRMRTSDAVNNNNISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTED 120
           DW SIRMRTS A NNNNIS  +VGL KEFREMLPIIVYNETFFVTDTLCSVCLGEY+TED
Sbjct: 61  DWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120

Query: 121 KLQKIPSCGHVFHLDCIDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMG 154
           KLQKIP+CGHVFH+DCIDHWL+NH+TCPLCRLSVLSPSS+PPHIQI+MG
Sbjct: 121 KLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQIDMG 169

[Close]

BLAST of CmaCh09G012010 vs. TrEMBL
Match: A0A0D2RD44_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G117800 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.0e-51
Identity = 101/151 (66.89%), Postives = 121/151 (80.13%), Query Frame = 1


Query: 9   SPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN-NISACDV 68
           S ELKLYQ F+F VPI F FILLF+FYL YLRRRRADW+S+RMRTS   +++ +IS  ++
Sbjct: 19  SAELKLYQAFIFSVPIFFAFILLFMFYLFYLRRRRADWSSLRMRTSPGPDSDLSISMAEL 78

Query: 69  GLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDHWLSN 128
           GL KE REMLPII+Y ETF + DT CSVCLGEYQ EDKLQ+IP+CGH FH+DCIDHWL+N
Sbjct: 79  GLKKEVREMLPIIIYKETFSIRDTQCSVCLGEYQAEDKLQQIPACGHTFHMDCIDHWLAN 138

Query: 129 HSTCPLCRLSVLSPSSRPPHIQIEMGLESTN 159
           H+TCPLCRLSVL+ S + P IQ      S+N
Sbjct: 139 HTTCPLCRLSVLASSDKLPVIQAANSQVSSN 169

[Close]

BLAST of CmaCh09G012010 vs. TrEMBL
Match: A0A061FJ88_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_036069 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-50
Identity = 101/155 (65.16%), Postives = 123/155 (79.35%), Query Frame = 1


Query: 9   SPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNNNISACDVG 68
           S ELKLYQ F+F VPI F FILLF+FYL YLRRRRADW+S+RMRT+   NNN++   ++G
Sbjct: 30  SAELKLYQAFIFSVPIFFAFILLFMFYLFYLRRRRADWSSLRMRTA-LDNNNDLYMAELG 89

Query: 69  LTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDHWLSNH 128
           L KE REMLPII+Y ETF + D  CSVCLG+YQ EDKLQ+IP+CGH FH+DCIDHWL+NH
Sbjct: 90  LKKEVREMLPIIIYKETFSIRDAQCSVCLGDYQAEDKLQQIPACGHTFHMDCIDHWLANH 149

Query: 129 STCPLCRLSVLS---PSSRPPHIQIEMGLESTNEQ 161
           +TCPLCRLSVL+    S + P IQ E G ES++ +
Sbjct: 150 TTCPLCRLSVLASPKASDKLPVIQAENGQESSHPE 183

[Close]

BLAST of CmaCh09G012010 vs. TrEMBL
Match: A0A0B0P8F2_GOSAR (RING-H2 finger ATL7-like protein OS=Gossypium arboreum GN=F383_24638 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.2e-49
Identity = 99/151 (65.56%), Postives = 120/151 (79.47%), Query Frame = 1


Query: 9   SPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN-NISACDV 68
           S ELKLYQ F+F VPI F FILLF+FYL YLRRRRADW+S+RMRTS    ++ +IS  ++
Sbjct: 20  SAELKLYQAFIFSVPIFFAFILLFMFYLFYLRRRRADWSSLRMRTSPGPYSDLSISMAEL 79

Query: 69  GLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDHWLSN 128
           GL KE REMLPII+Y ETF + DT C++CLGEYQ EDKLQ+IP+CGH FH+DCIDHWL+N
Sbjct: 80  GLKKEVREMLPIIIYKETFSIRDTQCAICLGEYQAEDKLQQIPACGHTFHMDCIDHWLAN 139

Query: 129 HSTCPLCRLSVLSPSSRPPHIQIEMGLESTN 159
           H+TCPLCRLSVL+ S + P IQ      S+N
Sbjct: 140 HTTCPLCRLSVLT-SDKLPVIQAANPQVSSN 169

[Close]

BLAST of CmaCh09G012010 vs. TrEMBL
Match: B9S6Y0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1329400 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 5.3e-48
Identity = 96/151 (63.58%), Postives = 119/151 (78.81%), Query Frame = 1


Query: 9   SPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNNNISACDVG 68
           S ELKLYQ F+F VPI FTF+LLFLFYL YLRRRR DW S+RMR ++   ++NI   ++G
Sbjct: 23  STELKLYQAFIFSVPIFFTFVLLFLFYLFYLRRRRVDWASLRMR-ANLQGSDNIFRAELG 82

Query: 69  LTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDHWLSNH 128
           L KE REMLPIIVY E+F V DT C VCLG+YQ ED+LQ+IP+CGH FH+ CIDHWL+NH
Sbjct: 83  LKKEVREMLPIIVYKESFSVKDTQCPVCLGDYQAEDRLQQIPACGHTFHMVCIDHWLANH 142

Query: 129 STCPLCRLSVLSPSSRP---PHIQIEMGLES 157
           +TCPLCRLS+++P+  P   P+ Q+E G ES
Sbjct: 143 TTCPLCRLSLVAPAKVPTESPNNQVEAGQES 172

[Close]

BLAST of CmaCh09G012010 vs. TAIR10
Match: AT1G33480.1 (AT1G33480.1 RING/U-box superfamily protein)

HSP 1 Score: 177.9 bits (450), Expect = 4.9e-45
Identity = 87/158 (55.06%), Postives = 115/158 (72.78%), Query Frame = 1


Query: 3   YDHLDQSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNNNI 62
           Y     SPELKLYQ F+F VPI FTFI+LFLFYL+YLRR  +D +S+ MRT+  +  N++
Sbjct: 11  YSAATSSPELKLYQAFIFSVPICFTFIILFLFYLIYLRRSSSDLSSLGMRTT-FIPGNSL 70

Query: 63  SACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCID 122
           S  ++GL+KE REMLPI+V+ E+F V D+ CSVCLG+YQ  DKLQ+IP C H FH+DCID
Sbjct: 71  STIELGLSKELREMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCID 130

Query: 123 HWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQ 161
            WL++H+TCPLCRL+++   SR         L S +E+
Sbjct: 131 LWLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSPDEE 167

[Close]

BLAST of CmaCh09G012010 vs. TAIR10
Match: AT4G10150.1 (AT4G10150.1 RING/U-box superfamily protein)

HSP 1 Score: 174.1 bits (440), Expect = 7.0e-44
Identity = 84/158 (53.16%), Postives = 118/158 (74.68%), Query Frame = 1


Query: 8   QSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRR---RADWNSIRMRTSDAV-NNNNIS 67
           +S +LKLYQ F+F VPI FTFI+LF+ Y++YLRR      DW+S+ MR    V  NNN+S
Sbjct: 22  ESEKLKLYQAFIFSVPICFTFIVLFVLYVIYLRRNSTTNVDWSSLGMRGGTFVPTNNNLS 81

Query: 68  ACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDH 127
             ++GL+K+ REMLP+++Y E+F V D+ CSVCLG+YQ E+KLQ++PSCGH FH++CID 
Sbjct: 82  TAELGLSKDIREMLPVVIYKESFIVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDL 141

Query: 128 WLSNHSTCPLCRLSVL-SPSSRPPH--IQIEMGLESTN 159
           WL++H+TCPLCRLS++  PS    H   +I   +E++N
Sbjct: 142 WLTSHTTCPLCRLSLIPKPSLDLSHQSTEIVSSIENSN 179

[Close]

BLAST of CmaCh09G012010 vs. TAIR10
Match: AT4G10160.1 (AT4G10160.1 RING/U-box superfamily protein)

HSP 1 Score: 147.1 bits (370), Expect = 9.2e-36
Identity = 76/158 (48.10%), Postives = 110/158 (69.62%), Query Frame = 1


Query: 9   SPELKLYQF-FVFCVPILFTFILLFLFYLLYLRRRRA----DWNSIRMRTSDAVNNNNIS 68
           S E ++ +F F+ CVPI    ++L +  +LY+ RR +    DW+S+         NNN+S
Sbjct: 14  STESQILKFTFIVCVPIC---VILIVLLVLYIMRRNSNTNVDWSSLG---GFVPTNNNLS 73

Query: 69  ACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDH 128
             ++GL+K+ REMLPI++Y E+F V DT CSVCLG+YQ E+KLQ++PSCGH FH++CID 
Sbjct: 74  TAELGLSKDIREMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDL 133

Query: 129 WLSNHSTCPLCRLSVL-SPSSRPPH--IQIEMGLESTN 159
           WL++H+TCPLCRLS++  PS    H  I+I   +E+TN
Sbjct: 134 WLTSHTTCPLCRLSLIPKPSVDLSHQSIEIVSSIENTN 165

[Close]

BLAST of CmaCh09G012010 vs. TAIR10
Match: AT4G24015.1 (AT4G24015.1 RING/U-box superfamily protein)

HSP 1 Score: 124.4 bits (311), Expect = 6.4e-29
Identity = 60/142 (42.25%), Postives = 95/142 (66.90%), Query Frame = 1


Query: 8   QSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNS-----IRMRTSDAVNNNNI 67
           Q+ +LKLYQ F+F +PILF+ IL  LFYL YL+RR +  +S     + + +S   +++  
Sbjct: 15  QAIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPSPMILPVSSSHQTSSHLP 74

Query: 68  SACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCID 127
           S C + +  E ++ L ++++NE     D+LC VCLGE++ +++L ++P C H+FHLDCI 
Sbjct: 75  SVCLLDVKVELKDKLHVVLFNEELGTRDSLCCVCLGEFELKEELVEMPLCKHIFHLDCIH 134

Query: 128 HWLSNHSTCPLCRLSVLSPSSR 145
            WL +H+TCPLCR SV   S++
Sbjct: 135 LWLYSHNTCPLCRSSVSISSTK 156

[Close]

BLAST of CmaCh09G012010 vs. TAIR10
Match: AT4G30400.1 (AT4G30400.1 RING/U-box superfamily protein)

HSP 1 Score: 89.4 bits (220), Expect = 2.3e-18
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 1


Query: 66  DVGLTKEFREMLPIIVYNETFFVTDTL--CSVCLGEYQTEDKLQKIPSCGHVFHLDCIDH 125
           D G+ + F + LP+  Y     + +    C+VCL E++TEDKL+ +P C H FH+DCID 
Sbjct: 105 DSGVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDT 164

Query: 126 WLSNHSTCPLCRLSVLS--PSSRPPHIQIEMGLESTNE 160
           WL +HSTCPLCR S+LS   S + P     + LES ++
Sbjct: 165 WLLSHSTCPLCRSSLLSDLSSHQDPRSSFLLVLESASD 202

[Close]

BLAST of CmaCh09G012010 vs. NCBI nr
Match: gi|659119165|ref|XP_008459509.1| (PREDICTED: RING-H2 finger protein ATL7 [Cucumis melo])

HSP 1 Score: 280.4 bits (716), Expect = 2.0e-72
Identity = 136/175 (77.71%), Postives = 149/175 (85.14%), Query Frame = 1


Query: 1   MGYDHLDQS----------------PELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRA 60
           M YDHLD+S                PELKLYQF VFC+PILFTFILLFLFYLLYLRRRRA
Sbjct: 1   MTYDHLDRSKSYSVASGPGSVSKPAPELKLYQFVVFCIPILFTFILLFLFYLLYLRRRRA 60

Query: 61  DWNSIRMRTSDAVNNNNISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTED 120
           DW SIRMRTS A  NNNIS  +VGL KEFREMLPIIVYNETFFVTDTLCSVCLGEY+TED
Sbjct: 61  DWTSIRMRTSAAATNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120

Query: 121 KLQKIPSCGHVFHLDCIDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNE 160
           KLQKIP+CGHVFH+DCIDHWL+NH+TCPLCRLS+LSPSS+PPHIQI+MG ES++E
Sbjct: 121 KLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSILSPSSQPPHIQIDMGHESSDE 175

[Close]

BLAST of CmaCh09G012010 vs. NCBI nr
Match: gi|449447531|ref|XP_004141521.1| (PREDICTED: RING-H2 finger protein ATL58 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 3.4e-72
Identity = 135/169 (79.88%), Postives = 145/169 (85.80%), Query Frame = 1


Query: 1   MGYDHLDQS----------------PELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRA 60
           M YDHLD S                PELK+YQFFVFC+PILFTFILLFLFYLLYLRRRRA
Sbjct: 1   MAYDHLDPSKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRA 60

Query: 61  DWNSIRMRTSDAVNNNNISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTED 120
           DW SIRMRTS A NNNNIS  +VGL KEFREMLPIIVYNETFFVTDTLCSVCLGEY+TED
Sbjct: 61  DWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120

Query: 121 KLQKIPSCGHVFHLDCIDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMG 154
           KLQKIP+CGHVFH+DCIDHWL+NH+TCPLCRLSVLSPSS+PPHIQI+MG
Sbjct: 121 KLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQIDMG 169

[Close]

BLAST of CmaCh09G012010 vs. NCBI nr
Match: gi|763762505|gb|KJB29759.1| (hypothetical protein B456_005G117800 [Gossypium raimondii])

HSP 1 Score: 209.5 bits (532), Expect = 4.3e-51
Identity = 101/151 (66.89%), Postives = 121/151 (80.13%), Query Frame = 1


Query: 9   SPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN-NISACDV 68
           S ELKLYQ F+F VPI F FILLF+FYL YLRRRRADW+S+RMRTS   +++ +IS  ++
Sbjct: 19  SAELKLYQAFIFSVPIFFAFILLFMFYLFYLRRRRADWSSLRMRTSPGPDSDLSISMAEL 78

Query: 69  GLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDHWLSN 128
           GL KE REMLPII+Y ETF + DT CSVCLGEYQ EDKLQ+IP+CGH FH+DCIDHWL+N
Sbjct: 79  GLKKEVREMLPIIIYKETFSIRDTQCSVCLGEYQAEDKLQQIPACGHTFHMDCIDHWLAN 138

Query: 129 HSTCPLCRLSVLSPSSRPPHIQIEMGLESTN 159
           H+TCPLCRLSVL+ S + P IQ      S+N
Sbjct: 139 HTTCPLCRLSVLASSDKLPVIQAANSQVSSN 169

[Close]

BLAST of CmaCh09G012010 vs. NCBI nr
Match: gi|590602457|ref|XP_007019758.1| (RING/U-box superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 207.6 bits (527), Expect = 1.6e-50
Identity = 101/155 (65.16%), Postives = 123/155 (79.35%), Query Frame = 1


Query: 9   SPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNNNISACDVG 68
           S ELKLYQ F+F VPI F FILLF+FYL YLRRRRADW+S+RMRT+   NNN++   ++G
Sbjct: 30  SAELKLYQAFIFSVPIFFAFILLFMFYLFYLRRRRADWSSLRMRTA-LDNNNDLYMAELG 89

Query: 69  LTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDHWLSNH 128
           L KE REMLPII+Y ETF + D  CSVCLG+YQ EDKLQ+IP+CGH FH+DCIDHWL+NH
Sbjct: 90  LKKEVREMLPIIIYKETFSIRDAQCSVCLGDYQAEDKLQQIPACGHTFHMDCIDHWLANH 149

Query: 129 STCPLCRLSVLS---PSSRPPHIQIEMGLESTNEQ 161
           +TCPLCRLSVL+    S + P IQ E G ES++ +
Sbjct: 150 TTCPLCRLSVLASPKASDKLPVIQAENGQESSHPE 183

[Close]

BLAST of CmaCh09G012010 vs. NCBI nr
Match: gi|728840941|gb|KHG20384.1| (RING-H2 finger ATL7 -like protein [Gossypium arboreum])

HSP 1 Score: 201.8 bits (512), Expect = 8.9e-49
Identity = 99/151 (65.56%), Postives = 120/151 (79.47%), Query Frame = 1


Query: 9   SPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN-NISACDV 68
           S ELKLYQ F+F VPI F FILLF+FYL YLRRRRADW+S+RMRTS    ++ +IS  ++
Sbjct: 20  SAELKLYQAFIFSVPIFFAFILLFMFYLFYLRRRRADWSSLRMRTSPGPYSDLSISMAEL 79

Query: 69  GLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDHWLSN 128
           GL KE REMLPII+Y ETF + DT C++CLGEYQ EDKLQ+IP+CGH FH+DCIDHWL+N
Sbjct: 80  GLKKEVREMLPIIIYKETFSIRDTQCAICLGEYQAEDKLQQIPACGHTFHMDCIDHWLAN 139

Query: 129 HSTCPLCRLSVLSPSSRPPHIQIEMGLESTN 159
           H+TCPLCRLSVL+ S + P IQ      S+N
Sbjct: 140 HTTCPLCRLSVLT-SDKLPVIQAANPQVSSN 169

The following BLAST results are available for this feature:

BLAST of CmaCh09G012010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL58_ARATH	8.6e-44	55.06	RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2 SV=1	[more]
ATL7_ARATH	1.2e-42	53.16	RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2 SV=1	[more]
ATL59_ARATH	1.6e-34	48.10	E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59 PE=1 SV=1	[more]
RHA4A_ARATH	1.1e-27	42.25	Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana GN=RHA4A PE=2...	[more]
ATL13_ARATH	4.0e-17	43.88	RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2	[more]

BLAST of CmaCh09G012010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVZ9_CUCSA	2.3e-72	79.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647300 PE=4 SV=1	[more]
A0A0D2RD44_GOSRA	3.0e-51	66.89	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G117800 PE=4 SV=1	[more]
A0A061FJ88_THECC	1.1e-50	65.16	RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_036069 PE=4 S...	[more]
A0A0B0P8F2_GOSAR	6.2e-49	65.56	RING-H2 finger ATL7-like protein OS=Gossypium arboreum GN=F383_24638 PE=4 SV=1	[more]
B9S6Y0_RICCO	5.3e-48	63.58	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1329400 PE=4 SV=1	[more]

BLAST of CmaCh09G012010 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G33480.1	4.9e-45	55.06	RING/U-box superfamily protein	[more]
AT4G10150.1	7.0e-44	53.16	RING/U-box superfamily protein	[more]
AT4G10160.1	9.2e-36	48.10	RING/U-box superfamily protein	[more]
AT4G24015.1	6.4e-29	42.25	RING/U-box superfamily protein	[more]
AT4G30400.1	2.3e-18	43.88	RING/U-box superfamily protein	[more]

BLAST of CmaCh09G012010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119165\|ref\|XP_008459509.1\|	2.0e-72	77.71	PREDICTED: RING-H2 finger protein ATL7 [Cucumis melo]	[more]
gi\|449447531\|ref\|XP_004141521.1\|	3.4e-72	79.88	PREDICTED: RING-H2 finger protein ATL58 [Cucumis sativus]	[more]
gi\|763762505\|gb\|KJB29759.1\|	4.3e-51	66.89	hypothetical protein B456_005G117800 [Gossypium raimondii]	[more]
gi\|590602457\|ref\|XP_007019758.1\|	1.6e-50	65.16	RING/U-box superfamily protein, putative [Theobroma cacao]	[more]
gi\|728840941\|gb\|KHG20384.1\|	8.9e-49	65.56	RING-H2 finger ATL7 -like protein [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G012010.1	CmaCh09G012010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 93..135 score: 8.2
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 93..134 score: 2.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 93..135 score: 13
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 90..138 score: 7.9
None	No IPR available	PANTHER	PTHR22765	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	coord: 6..162 score: 7.9
None	No IPR available	PANTHER	PTHR22765:SF29	E3 UBIQUITIN-PROTEIN LIGASE ATL59-RELATED	coord: 6..162 score: 7.9
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 77..146 score: 8.58

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G012010	Cucsa.237760	Cucumber (Gy14) v1	cgycmaB0658
CmaCh09G012010	Cla012389	Watermelon (97103) v1	cmawmB017
CmaCh09G012010	Csa5G647300	Cucumber (Chinese Long) v2	cmacuB031
CmaCh09G012010	MELO3C022123	Melon (DHL92) v3.5.1	cmameB011
CmaCh09G012010	ClCG08G001740	Watermelon (Charleston Gray)	cmawcgB032
CmaCh09G012010	CSPI05G30360	Wild cucumber (PI 183967)	cmacpiB031
CmaCh09G012010	CmoCh01G009220	Cucurbita moschata (Rifu)	cmacmoB056
CmaCh09G012010	CmoCh09G012080	Cucurbita moschata (Rifu)	cmacmoB030
CmaCh09G012010	Lsi08G001770	Bottle gourd (USVL1VR-Ls)	cmalsiB035
CmaCh09G012010	Cp4.1LG02g11010	Cucurbita pepo (Zucchini)	cmacpeB046
CmaCh09G012010	Cp4.1LG06g09700	Cucurbita pepo (Zucchini)	cmacpeB064
CmaCh09G012010	MELO3C022123.2	Melon (DHL92) v3.6.1	cmamedB012
CmaCh09G012010	CsaV3_5G039460	Cucumber (Chinese Long) v3	cmacucB0038
CmaCh09G012010	Cla97C08G145880	Watermelon (97103) v2	cmawmbB038
CmaCh09G012010	Bhi06G000124	Wax gourd	cmawgoB0011
CmaCh09G012010	CsGy5G029750	Cucumber (Gy14) v2	cgybcmaB580
CmaCh09G012010	Carg27051	Silver-seed gourd	carcmaB0036

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh09G012010	CmaCh01G008800	Cucurbita maxima (Rimu)	cmacmaB048

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G012010	Watermelon (97103) v2	cmawmbB046
CmaCh09G012010	Cucurbita maxima (Rimu)	cmacmaB056
CmaCh09G012010	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G012010	Cucurbita moschata (Rifu)	cmacmoB046
CmaCh09G012010	Watermelon (Charleston Gray)	cmawcgB039
CmaCh09G012010	Watermelon (97103) v1	cmawmB016