Cla012389 (gene) Watermelon (97103) v1

Overview
NameCla012389
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRING finger 1-like (AHRD V1 *-*- Q69KM4_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type
LocationChr8 : 2379907 .. 2381437 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTATGACCATTTGGATCCATCTAAAAGCTATTCGGTTGCTTCAGGACCAGGTCCAATCTCAAGGCCTGCACCAGAACTGAAGCTCTATCAGTTTTTTGTTTTCTGTATTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTACCTCCTTTATCTTCGTCGACGAAGGGCTGATTGGACTTCCATTCGAATGCGAACATCTGCTGCAGCCAATAACAATAACATCTCTACAGTATGAGCTTTTCTTTGTGTTTGCTTTCCCTGTGCTTTTCATTGGTTTTTTGTGCTGGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTGTGTGTGTGTGTGTTCTTTGCTTTGCTTTGAATTATTAATGATTTTGAACGTTCTATTATTCTTCTGGTTGAACAGTCTGAAGTTGGGTTGAAGAAAGAATTCAGGGAGATGCTTCCTATTATTGTATACAATGAGACATTCTTTGTCACTGATACACTGTGAGTGAATGTTTTCTTATGTTTGGTAAAAGAGATATTCTATTTTAGAGGCATGGTATATGTGTTGTTATTTGATTAGCTTTATTCTTCTGTTAACCCTTGTATGTGAACTTGGAACGAATTGAAAAGGTCTTGAATGAGCATCAAGTTAGGAGATCCGGCTCTTACTCCTTACACTCTTCAGTTATGGCTTTCTATTTTCAAGCTCTTTAGATGTTGCTGCTAGTTTCTTTTTGGATTGCTAATATTACTTTTGACTGTTTGGTAATCATTTGGATTTTGGCTTTTAGTTTTTAAAAGTTAAGCCTATAAACACTCTTTTCACCTTTAAAATTATTGCTTTTTTCAAAAACCAAAAGTAACAAGCGAAATGGTTACCAAACGGAGACCTTTATTAGTATTGTGTAAGACTGAAAAGTTATTGGAGCCATTATCGGGACTTTTTCGTTTTTCATTTTTCCTTTTCTTACAATGGTTCAAGTGGGTTGCGACGGGTTTGAATGATGGATGGAAGTTTAGTAGTGGACCTTTATGATGTTTACCTTTGTGTTGGTTGGCTCTACTAATAATATTGGTCTACTCCAAAGGAAATATTGAAGATTCAAAGATTATGAAAAGTGATATATGAATTTAGAAAAAAGGAAAGGGTTGTTGGGTGTTGATTATCAAAGGCAGCCAATGTTTTGTTAATTCTCTCTTTTTCTGCCTCATCTTGAAGGAGCCATCAATCCTTGTGTGTTTGTCTTTTTGTTGCAGTTGTTCGGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTGTCCAACCACAACACTTGTCCACTCTGCCGTCTCTCTGTCCTCTCACCGTCGTCTCAACCACCACATATTCAGATCGACATGGGACTCGAATCGTCGAACGAACAACAATGCGAAGAAGCACCTCCTCCACCCAGTACTCAAGCTTGTCAACATACAACACCTCCAGTGTAA

mRNA sequence

ATGGCTTATGACCATTTGGATCCATCTAAAAGCTATTCGGTTGCTTCAGGACCAGGTCCAATCTCAAGGCCTGCACCAGAACTGAAGCTCTATCAGTTTTTTGTTTTCTGTATTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTACCTCCTTTATCTTCGTCGACGAAGGGCTGATTGGACTTCCATTCGAATGCGAACATCTGCTGCAGCCAATAACAATAACATCTCTACATCTGAAGTTGGGTTGAAGAAAGAATTCAGGGAGATGCTTCCTATTATTGTATACAATGAGACATTCTTTGTCACTGATACACTTTGTTCGGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTGTCCAACCACAACACTTGTCCACTCTGCCGTCTCTCTGTCCTCTCACCGTCGTCTCAACCACCACATATTCAGATCGACATGGGACTCGAATCGTCGAACGAACAACAATGCGAAGAAGCACCTCCTCCACCCAGTACTCAAGCTTGTCAACATACAACACCTCCAGTGTAA

Coding sequence (CDS)

ATGGCTTATGACCATTTGGATCCATCTAAAAGCTATTCGGTTGCTTCAGGACCAGGTCCAATCTCAAGGCCTGCACCAGAACTGAAGCTCTATCAGTTTTTTGTTTTCTGTATTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTACCTCCTTTATCTTCGTCGACGAAGGGCTGATTGGACTTCCATTCGAATGCGAACATCTGCTGCAGCCAATAACAATAACATCTCTACATCTGAAGTTGGGTTGAAGAAAGAATTCAGGGAGATGCTTCCTATTATTGTATACAATGAGACATTCTTTGTCACTGATACACTTTGTTCGGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTGTCCAACCACAACACTTGTCCACTCTGCCGTCTCTCTGTCCTCTCACCGTCGTCTCAACCACCACATATTCAGATCGACATGGGACTCGAATCGTCGAACGAACAACAATGCGAAGAAGCACCTCCTCCACCCAGTACTCAAGCTTGTCAACATACAACACCTCCAGTGTAA

Protein sequence

MAYDHLDPSKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQIDMGLESSNEQQCEEAPPPPSTQACQHTTPPV
Homology
[Close]
BLAST of Cla012389 vs. Swiss-Prot
Match: ATL7_ARATH (RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.6e-46
Identity = 90/180 (50.00%), Postives = 123/180 (68.33%), Query Frame = 1 

Query: 22  SRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRR---RADWTSIRMRTSA-AANNNN 81
           S  + +LKLYQ F+F +PI FTFI+LF+ Y++YLRR      DW+S+ MR       NNN
Sbjct: 20  STESEKLKLYQAFIFSVPICFTFIVLFVLYVIYLRRNSTTNVDWSSLGMRGGTFVPTNNN 79

Query: 82  ISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSCGHVFHLDCI 141
           +ST+E+GL K+ REMLP+++Y E+F V D+ CSVCLG+Y+ E+KLQ++PSCGH FH++CI
Sbjct: 80  LSTAELGLSKDIREMLPVVIYKESFIVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECI 139

Query: 142 DHWLSNHNTCPLCRLSVL-SPSSQPPH--IQIDMGLESSNEQQCEEAPPPPS-TQACQHT 194
           D WL++H TCPLCRLS++  PS    H   +I   +E+SN  +    P   S T+A  HT
Sbjct: 140 DLWLTSHTTCPLCRLSLIPKPSLDLSHQSTEIVSSIENSNGGEASTQPDSQSATEAISHT 199

[Close]
BLAST of Cla012389 vs. Swiss-Prot
Match: ATL58_ARATH (RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.5e-45
Identity = 93/195 (47.69%), Postives = 126/195 (64.62%), Query Frame = 1 

Query: 1   MAYDHLDPSKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRA 60
           M+Y + +P ++YS A+        +PELKLYQ F+F +PI FTFI+LFLFYL+YLRR  +
Sbjct: 1   MSYSNSNP-ENYSAATS-------SPELKLYQAFIFSVPICFTFIILFLFYLIYLRRSSS 60

Query: 61  DWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120
           D +S+ MRT+    N+ +ST E+GL KE REMLPI+V+ E+F V D+ CSVCLG+Y+  D
Sbjct: 61  DLSSLGMRTTFIPGNS-LSTIELGLSKELREMLPIVVFKESFTVMDSQCSVCLGDYQPND 120

Query: 121 KLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQIDMGLESSNEQQCEE 180
           KLQ+IP C H FH+DCID WL++H TCPLCRL+++   S+         L S +E+   +
Sbjct: 121 KLQQIPVCKHTFHMDCIDLWLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSPDEEVSSQ 180

Query: 181 APPPPSTQACQHTTP 196
               P       T P
Sbjct: 181 PESEPVNHRVVSTQP 186

[Close]
BLAST of Cla012389 vs. Swiss-Prot
Match: ATL59_ARATH (E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59 PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.8e-36
Identity = 77/167 (46.11%), Postives = 109/167 (65.27%), Query Frame = 1 

Query: 34  FVFCIPILFTFILLFLFYLLYLRRRRA----DWTSIRMRTSAAANNNNISTSEVGLKKEF 93
           F+ C+PI    ++L +  +LY+ RR +    DW+S+         NNN+ST+E+GL K+ 
Sbjct: 24  FIVCVPIC---VILIVLLVLYIMRRNSNTNVDWSSLG---GFVPTNNNLSTAELGLSKDI 83

Query: 94  REMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSCGHVFHLDCIDHWLSNHNTCPL 153
           REMLPI++Y E+F V DT CSVCLG+Y+ E+KLQ++PSCGH FH++CID WL++H TCPL
Sbjct: 84  REMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPL 143

Query: 154 CRLSVL-SPSSQPPH--IQIDMGLESSNEQQCEEAPPPPS-TQACQH 193
           CRLS++  PS    H  I+I   +E++N  +    P   S T+A  H
Sbjct: 144 CRLSLIPKPSVDLSHQSIEIVSSIENTNGGEASTQPDSQSATEAIIH 184

[Close]
BLAST of Cla012389 vs. Swiss-Prot
Match: RHA4A_ARATH (Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana GN=RHA4A PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 7.3e-29
Identity = 62/141 (43.97%), Postives = 92/141 (65.25%), Query Frame = 1 

Query: 25  APELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTS-----IRMRTSAAANNNNIS 84
           A +LKLYQ F+F IPILF+ IL  LFYL YL+RR +  +S     + + +S   +++  S
Sbjct: 16  AIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPSPMILPVSSSHQTSSHLPS 75

Query: 85  TSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSCGHVFHLDCIDH 144
              + +K E ++ L ++++NE     D+LC VCLGE++ +++L ++P C H+FHLDCI  
Sbjct: 76  VCLLDVKVELKDKLHVVLFNEELGTRDSLCCVCLGEFELKEELVEMPLCKHIFHLDCIHL 135

Query: 145 WLSNHNTCPLCRLSVLSPSSQ 161
           WL +HNTCPLCR SV   S++
Sbjct: 136 WLYSHNTCPLCRSSVSISSTK 156

[Close]
BLAST of Cla012389 vs. Swiss-Prot
Match: ATL13_ARATH (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 2.9e-17
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 1 

Query: 84  GLKKEFREMLPIIVYNETFFVTDTL--CSVCLGEYKTEDKLQKIPSCGHVFHLDCIDHWL 143
           G+ + F + LP+  Y     + +    C+VCL E++TEDKL+ +P C H FH+DCID WL
Sbjct: 107 GVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL 166

Query: 144 SNHNTCPLCRLSVLS--PSSQPPHIQIDMGLESSNEQQCEEAPPPPSTQAC 191
            +H+TCPLCR S+LS   S Q P     + LES+++    E      + AC
Sbjct: 167 LSHSTCPLCRSSLLSDLSSHQDPRSSFLLVLESASDHSSREIGGDRDSAAC 217

[Close]
BLAST of Cla012389 vs. TrEMBL
Match: A0A0A0KVZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647300 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 1.6e-102
Identity = 180/197 (91.37%), Postives = 187/197 (94.92%), Query Frame = 1 

Query: 1   MAYDHLDPSKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRA 60
           MAYDHLDPSKSY+VASGPG  S+PAPELK+YQFFVFCIPILFTFILLFLFYLLYLRRRRA
Sbjct: 1   MAYDHLDPSKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRA 60

Query: 61  DWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120
           DWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED
Sbjct: 61  DWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120

Query: 121 KLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQIDMGLESSNEQQCEE 180
           KLQKIP+CGHVFH+DCIDHWL+NHNTCPLCRLSVLSPSSQPPHIQIDMG    +E QCEE
Sbjct: 121 KLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQIDMG---HDEPQCEE 180

Query: 181 APPPPSTQACQHTTPPV 198
            PPP S QACQHTTPPV
Sbjct: 181 PPPPHSNQACQHTTPPV 194

[Close]
BLAST of Cla012389 vs. TrEMBL
Match: A0A061FJ88_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_036069 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.9e-56
Identity = 109/188 (57.98%), Postives = 136/188 (72.34%), Query Frame = 1 

Query: 9   SKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMR 68
           SK     S     S  + ELKLYQ F+F +PI F FILLF+FYL YLRRRRADW+S+RMR
Sbjct: 14  SKQAGCCSSSTTSSAVSAELKLYQAFIFSVPIFFAFILLFMFYLFYLRRRRADWSSLRMR 73

Query: 69  TSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSC 128
           T A  NNN++  +E+GLKKE REMLPII+Y ETF + D  CSVCLG+Y+ EDKLQ+IP+C
Sbjct: 74  T-ALDNNNDLYMAELGLKKEVREMLPIIIYKETFSIRDAQCSVCLGDYQAEDKLQQIPAC 133

Query: 129 GHVFHLDCIDHWLSNHNTCPLCRLSVLS---PSSQPPHIQIDMGLESSNEQQCEEAPPPP 188
           GH FH+DCIDHWL+NH TCPLCRLSVL+    S + P IQ + G ESS+ +    +   P
Sbjct: 134 GHTFHMDCIDHWLANHTTCPLCRLSVLASPKASDKLPVIQAENGQESSHPENSNGSSVQP 193

Query: 189 STQACQHT 194
            +Q+C+ T
Sbjct: 194 MSQSCEET 200

[Close]
BLAST of Cla012389 vs. TrEMBL
Match: A0A0D2RD44_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G117800 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 5.4e-55
Identity = 109/186 (58.60%), Postives = 133/186 (71.51%), Query Frame = 1 

Query: 9   SKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMR 68
           S+S SV+      S  + ELKLYQ F+F +PI F FILLF+FYL YLRRRRADW+S+RMR
Sbjct: 3   SRSLSVSEPQTSSSSVSAELKLYQAFIFSVPIFFAFILLFMFYLFYLRRRRADWSSLRMR 62

Query: 69  TSAAANNN-NISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPS 128
           TS   +++ +IS +E+GLKKE REMLPII+Y ETF + DT CSVCLGEY+ EDKLQ+IP+
Sbjct: 63  TSPGPDSDLSISMAELGLKKEVREMLPIIIYKETFSIRDTQCSVCLGEYQAEDKLQQIPA 122

Query: 129 CGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQIDMGLESSNEQQCEEAPPPPST 188
           CGH FH+DCIDHWL+NH TCPLCRLSVL+ S + P IQ      SSN             
Sbjct: 123 CGHTFHMDCIDHWLANHTTCPLCRLSVLASSDKLPVIQAANSQVSSNPVNSNGLAVQTVA 182

Query: 189 QACQHT 194
           Q C+ T
Sbjct: 183 QNCEET 188

[Close]
BLAST of Cla012389 vs. TrEMBL
Match: M5VMK2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010460mg PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.9e-53
Identity = 109/198 (55.05%), Postives = 139/198 (70.20%), Query Frame = 1 

Query: 1   MAYDHLDPSKSYSVASGPGPISR-PAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRR 60
           M+Y+H+ P    + +         P+ + KLYQFFVFC+PI FTFILLF+FYL YLR RR
Sbjct: 1   MSYNHVYPRCCLNSSDSSSKSKESPSGQFKLYQFFVFCVPIFFTFILLFVFYLFYLRPRR 60

Query: 61  ADWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTE 120
            +W+S+RM TS   NN+ I+T E+GLKKE REMLPIIVY E+F V DT CSVCLG+Y+ E
Sbjct: 61  VNWSSLRMTTSPQINND-IATVELGLKKELREMLPIIVYKESFSVRDTQCSVCLGDYQAE 120

Query: 121 DKLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQIDMGLESSNEQQCE 180
           D+LQ+IP+C H FH+DCID WLS H+TCPLCRLS+LS S +  +   D+ +ESS+E    
Sbjct: 121 DRLQQIPACAHTFHIDCIDSWLSTHSTCPLCRLSLLS-SHKSQNESPDVPVESSHEYSVA 180

Query: 181 E----APPPPSTQACQHT 194
           E     P P   QAC+ T
Sbjct: 181 ENNFVTPLPQMPQACEET 196

[Close]
BLAST of Cla012389 vs. TrEMBL
Match: A0A0B0P8F2_GOSAR (RING-H2 finger ATL7-like protein OS=Gossypium arboreum GN=F383_24638 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.3e-52
Identity = 107/187 (57.22%), Postives = 133/187 (71.12%), Query Frame = 1 

Query: 9   SKSYSVASGPG-PISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRM 68
           S+S SV+     P S  + ELKLYQ F+F +PI F FILLF+FYL YLRRRRADW+S+RM
Sbjct: 3   SRSLSVSEPQNSPSSSVSAELKLYQAFIFSVPIFFAFILLFMFYLFYLRRRRADWSSLRM 62

Query: 69  RTSAAANNN-NISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIP 128
           RTS    ++ +IS +E+GLKKE REMLPII+Y ETF + DT C++CLGEY+ EDKLQ+IP
Sbjct: 63  RTSPGPYSDLSISMAELGLKKEVREMLPIIIYKETFSIRDTQCAICLGEYQAEDKLQQIP 122

Query: 129 SCGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQIDMGLESSNEQQCEEAPPPPS 188
           +CGH FH+DCIDHWL+NH TCPLCRLSVL+ S + P IQ      SSN            
Sbjct: 123 ACGHTFHMDCIDHWLANHTTCPLCRLSVLT-SDKLPVIQAANPQVSSNPVNSNGLDVQTV 182

Query: 189 TQACQHT 194
            + C+ T
Sbjct: 183 AENCEET 188

[Close]
BLAST of Cla012389 vs. NCBI nr
Match: gi|659119165|ref|XP_008459509.1| (PREDICTED: RING-H2 finger protein ATL7 [Cucumis melo])

HSP 1 Score: 383.3 bits (983), Expect = 2.6e-103
Identity = 180/197 (91.37%), Postives = 187/197 (94.92%), Query Frame = 1 

Query: 1   MAYDHLDPSKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRA 60
           M YDHLD SKSYSVASGPG +S+PAPELKLYQF VFCIPILFTFILLFLFYLLYLRRRRA
Sbjct: 1   MTYDHLDRSKSYSVASGPGSVSKPAPELKLYQFVVFCIPILFTFILLFLFYLLYLRRRRA 60

Query: 61  DWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120
           DWTSIRMRTSAAA NNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED
Sbjct: 61  DWTSIRMRTSAAATNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120

Query: 121 KLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQIDMGLESSNEQQCEE 180
           KLQKIP+CGHVFH+DCIDHWL+NHNTCPLCRLS+LSPSSQPPHIQIDMG ESS+E QCEE
Sbjct: 121 KLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSILSPSSQPPHIQIDMGHESSDEPQCEE 180

Query: 181 APPPPSTQACQHTTPPV 198
            PPP S QACQHTTPPV
Sbjct: 181 PPPPHSNQACQHTTPPV 197

[Close]
BLAST of Cla012389 vs. NCBI nr
Match: gi|449447531|ref|XP_004141521.1| (PREDICTED: RING-H2 finger protein ATL58 [Cucumis sativus])

HSP 1 Score: 380.2 bits (975), Expect = 2.2e-102
Identity = 180/197 (91.37%), Postives = 187/197 (94.92%), Query Frame = 1 

Query: 1   MAYDHLDPSKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRA 60
           MAYDHLDPSKSY+VASGPG  S+PAPELK+YQFFVFCIPILFTFILLFLFYLLYLRRRRA
Sbjct: 1   MAYDHLDPSKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRA 60

Query: 61  DWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120
           DWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED
Sbjct: 61  DWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120

Query: 121 KLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQIDMGLESSNEQQCEE 180
           KLQKIP+CGHVFH+DCIDHWL+NHNTCPLCRLSVLSPSSQPPHIQIDMG    +E QCEE
Sbjct: 121 KLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQIDMG---HDEPQCEE 180

Query: 181 APPPPSTQACQHTTPPV 198
            PPP S QACQHTTPPV
Sbjct: 181 PPPPHSNQACQHTTPPV 194

[Close]
BLAST of Cla012389 vs. NCBI nr
Match: gi|590602457|ref|XP_007019758.1| (RING/U-box superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 225.7 bits (574), Expect = 7.0e-56
Identity = 109/188 (57.98%), Postives = 136/188 (72.34%), Query Frame = 1 

Query: 9   SKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMR 68
           SK     S     S  + ELKLYQ F+F +PI F FILLF+FYL YLRRRRADW+S+RMR
Sbjct: 14  SKQAGCCSSSTTSSAVSAELKLYQAFIFSVPIFFAFILLFMFYLFYLRRRRADWSSLRMR 73

Query: 69  TSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSC 128
           T A  NNN++  +E+GLKKE REMLPII+Y ETF + D  CSVCLG+Y+ EDKLQ+IP+C
Sbjct: 74  T-ALDNNNDLYMAELGLKKEVREMLPIIIYKETFSIRDAQCSVCLGDYQAEDKLQQIPAC 133

Query: 129 GHVFHLDCIDHWLSNHNTCPLCRLSVLS---PSSQPPHIQIDMGLESSNEQQCEEAPPPP 188
           GH FH+DCIDHWL+NH TCPLCRLSVL+    S + P IQ + G ESS+ +    +   P
Sbjct: 134 GHTFHMDCIDHWLANHTTCPLCRLSVLASPKASDKLPVIQAENGQESSHPENSNGSSVQP 193

Query: 189 STQACQHT 194
            +Q+C+ T
Sbjct: 194 MSQSCEET 200

[Close]
BLAST of Cla012389 vs. NCBI nr
Match: gi|763762505|gb|KJB29759.1| (hypothetical protein B456_005G117800 [Gossypium raimondii])

HSP 1 Score: 222.2 bits (565), Expect = 7.8e-55
Identity = 109/186 (58.60%), Postives = 133/186 (71.51%), Query Frame = 1 

Query: 9   SKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMR 68
           S+S SV+      S  + ELKLYQ F+F +PI F FILLF+FYL YLRRRRADW+S+RMR
Sbjct: 3   SRSLSVSEPQTSSSSVSAELKLYQAFIFSVPIFFAFILLFMFYLFYLRRRRADWSSLRMR 62

Query: 69  TSAAANNN-NISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPS 128
           TS   +++ +IS +E+GLKKE REMLPII+Y ETF + DT CSVCLGEY+ EDKLQ+IP+
Sbjct: 63  TSPGPDSDLSISMAELGLKKEVREMLPIIIYKETFSIRDTQCSVCLGEYQAEDKLQQIPA 122

Query: 129 CGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQIDMGLESSNEQQCEEAPPPPST 188
           CGH FH+DCIDHWL+NH TCPLCRLSVL+ S + P IQ      SSN             
Sbjct: 123 CGHTFHMDCIDHWLANHTTCPLCRLSVLASSDKLPVIQAANSQVSSNPVNSNGLAVQTVA 182

Query: 189 QACQHT 194
           Q C+ T
Sbjct: 183 QNCEET 188

[Close]
BLAST of Cla012389 vs. NCBI nr
Match: gi|743933508|ref|XP_011011073.1| (PREDICTED: RING-H2 finger protein ATL7-like isoform X2 [Populus euphratica])

HSP 1 Score: 218.0 bits (554), Expect = 1.5e-53
Identity = 108/197 (54.82%), Postives = 134/197 (68.02%), Query Frame = 1 

Query: 1   MAYDHLDPSKSYSV-ASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRR 60
           M+    +P   YS  AS        + ELKLYQ F+F +PI F FILLFLFYL YLRRRR
Sbjct: 1   MSRSKSEPPSCYSTTASSTSRSPVASTELKLYQAFIFSVPIFFAFILLFLFYLFYLRRRR 60

Query: 61  ADWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTE 120
            DW S+RMR S   +  +IS  E+GLKKE REMLPIIVY E+F V DT C VCLG+Y+ E
Sbjct: 61  VDWASLRMRASLQDHTVDISRVEMGLKKELREMLPIIVYKESFSVRDTQCPVCLGDYQAE 120

Query: 121 DKLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVLS---PSSQPPHIQIDMGLESSNEQ 180
           DKLQ+IP+CGH FH+DCIDHWL+NH TCPLCRLS+L+     S+PP  Q++   ESS  +
Sbjct: 121 DKLQQIPACGHTFHMDCIDHWLANHTTCPLCRLSLLASVKAPSEPPRNQVEAVQESSAAE 180

Query: 181 QCEEAPPPPSTQACQHT 194
             E A   P  ++C+ +
Sbjct: 181 NGEGASVQPRPESCEES 197

The following BLAST results are available for this feature:
BLAST of Cla012389 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL7_ARATH6.6e-4650.00RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2 SV=1[more]
ATL58_ARATH2.5e-4547.69RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2 SV=1[more]
ATL59_ARATH2.8e-3646.11E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59 PE=1 SV=1[more]
RHA4A_ARATH7.3e-2943.97Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana GN=RHA4A PE=2... [more]
ATL13_ARATH2.9e-1740.54RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2[more]
BLAST of Cla012389 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVZ9_CUCSA1.6e-10291.37Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647300 PE=4 SV=1[more]
A0A061FJ88_THECC4.9e-5657.98RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_036069 PE=4 S... [more]
A0A0D2RD44_GOSRA5.4e-5558.60Uncharacterized protein OS=Gossypium raimondii GN=B456_005G117800 PE=4 SV=1[more]
M5VMK2_PRUPE3.9e-5355.05Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010460mg PE=4 SV=1[more]
A0A0B0P8F2_GOSAR4.3e-5257.22RING-H2 finger ATL7-like protein OS=Gossypium arboreum GN=F383_24638 PE=4 SV=1[more]
BLAST of Cla012389 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119165|ref|XP_008459509.1|2.6e-10391.37PREDICTED: RING-H2 finger protein ATL7 [Cucumis melo][more]
gi|449447531|ref|XP_004141521.1|2.2e-10291.37PREDICTED: RING-H2 finger protein ATL58 [Cucumis sativus][more]
gi|590602457|ref|XP_007019758.1|7.0e-5657.98RING/U-box superfamily protein, putative [Theobroma cacao][more]
gi|763762505|gb|KJB29759.1|7.8e-5558.60hypothetical protein B456_005G117800 [Gossypium raimondii][more]
gi|743933508|ref|XP_011011073.1|1.5e-5354.82PREDICTED: RING-H2 finger protein ATL7-like isoform X2 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
biological_process GO:0008150 biological_process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0061630 ubiquitin protein ligase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU31707watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012389Cla012389.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU31707WMU31707transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 109..151
score: 6.6
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 109..150
score: 2.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 109..151
score: 13
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 106..154
score: 5.3
NoneNo IPR availablePANTHERPTHR22765RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAININGcoord: 26..177
score: 4.2
NoneNo IPR availablePANTHERPTHR22765:SF29E3 UBIQUITIN-PROTEIN LIGASE ATL59-RELATEDcoord: 26..177
score: 4.2
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 93..162
score: 2.59