Csa5G566290 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G566290
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionF-box protein family-like protein; contains IPR001810 (F-box domain, cyclin-like), IPR006553 (Leucine-rich repeat, cysteine-containing subtype), IPR017900 (4Fe-4S ferredoxin, iron-sulphur binding, conserved site)
LocationChr5 : 19695174 .. 19696696 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGGACCAGAATCATCCGTAGCTAAGGAATTGGGTTTTTCCCGCACATCGGCGGCAGAGAAGAAAGATGAAGAACTTACTTCCATGTCTGAGAATCAGGAACCGCCAAATCCGGCGTCTGTGGCTGAAGCAGGGCCACCGCATGAGGCGTTGTTTCATGTTATGACTTATCTTCCTCTCTTTGAGCTTCTTTCCCTGAGCGCAGTCTGTGTATCGCTGAGAGACGCAGTGGAACATGATGTGTTGCCGTGGCTTCACATCGTCGTCGATGGGCGATTGAGCTCCCGGTTGTCCGATTACACTCTGGGGAGAATTGCCCGGAAGGCGAGTGGCCGCCTTAGAACTTTGGCTTTGATCAACTGTTTCAAGATTTCAGATTCTGGACTTCACGAAGTTGTTGAGAACAATCCTCTTCTCACCAAGGTATTCACAGCTTCTGCTGAGTTGTTGGTTGGTTAATCTTATCAATAATTTCTTCATTTGTACTTTTAATATTTATTCGAACTGTTTTAATTATCTGTTGAGAATGTCAATTTGGGTTGTTTCTACTTTTATGAGATTTATACTGCAATGATCGGAATTTAATAAAGGACTTAAAGAATGTATTCGATCATGTTAGTCTAATAGTTAATGGGAGTCATGGGTCGTAATGTAAGACGGTATGTCCTATAAGTTCAGTCGAAATGCGTATACACTCACAAGAAAGTTAGTTATTTGAAAAATTATCCCATCAAATTCAAAGAACAACCATTTTACTCTCGGAAACAAAACATGTTGAGCATTTTCCTTCTTGATTCAGCTTTATGTACCCGGATGCACTAGTTTGACTCCTGAGGGAGTGGTTAGAGCAGTGAAGACTTTGTCCCAAGATTCTCACAATTTGAAGAATTTAATGATTGGTGGCATTTACAACATAGAGAACCAACACCTTGAAGTCCTCAGATCCCATCTTCTTGAAAACCGATCACTGAACAAGCAGCAGGAGTGGCGACAGGTACACCATCTGTATCATGAGCACGTGGACCGGCCGAGGTTGTTGAGTAGCGATTTCCTGCCAGTGATTGATGTACAAATCTGCCCAAAATGCTATGACATAAGGAATGTCTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGGAGAGAATTTGCTGGCAGATTGCCGGGGTTGCATTTGTTGCATTCCAAGGTGTGAAGAATGCGGCGGATGCGTGGATGATGATGAAATAGAAGAGGCTATATGTTCAGATATCTTGTGTTCAAGTTGCTGGTTTCAACTTCCCAAATGCAACCATTGTAATAGGCCATATTGCAAGCGACACCGTGATAATGTAAGTAGCTCTACTGCTGGGTTTGTTTGTGAAATTTGTCTTGAAACATAATATGGTTGAGTTGCCACATGAATTTGGATTAAAATTAGAAGCCATTGTTTGCTTTTTTTGTATCTTGCAAATGAACGTTGCAAGGCATGGCTGCAACAAATTATGCTTTGTTTGAACGAACTGTAAGTATAATGGG

mRNA sequence

ATGGCCGGACCAGAATCATCCGTAGCTAAGGAATTGGGTTTTTCCCGCACATCGGCGGCAGAGAAGAAAGATGAAGAACTTACTTCCATGTCTGAGAATCAGGAACCGCCAAATCCGGCGTCTGTGGCTGAAGCAGGGCCACCGCATGAGGCGTTGTTTCATGTTATGACTTATCTTCCTCTCTTTGAGCTTCTTTCCCTGAGCGCAGTCTGTGTATCGCTGAGAGACGCAGTGGAACATGATGTGTTGCCGTGGCTTCACATCGTCGTCGATGGGCGATTGAGCTCCCGGTTGTCCGATTACACTCTGGGGAGAATTGCCCGGAAGGCGAGTGGCCGCCTTAGAACTTTGGCTTTGATCAACTGTTTCAAGATTTCAGATTCTGGACTTCACGAAGTTGTTGAGAACAATCCTCTTCTCACCAAGCTTTATGTACCCGGATGCACTAGTTTGACTCCTGAGGGAGTGGTTAGAGCAGTGAAGACTTTGTCCCAAGATTCTCACAATTTGAAGAATTTAATGATTGGTGGCATTTACAACATAGAGAACCAACACCTTGAAGTCCTCAGATCCCATCTTCTTGAAAACCGATCACTGAACAAGCAGCAGGAGTGGCGACAGGTACACCATCTGTATCATGAGCACGTGGACCGGCCGAGGTTGTTGAGTAGCGATTTCCTGCCAGTGATTGATGTACAAATCTGCCCAAAATGCTATGACATAAGGAATGTCTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGGAGAGAATTTGCTGGCAGATTGCCGGGGTTGCATTTGTTGCATTCCAAGGTGTGAAGAATGCGGCGGATGCGTGGATGATGATGAAATAGAAGAGGCTATATGTTCAGATATCTTGTGTTCAAGTTGCTGGTTTCAACTTCCCAAATGCAACCATTGTAATAGGCCATATTGCAAGCGACACCGTGATAATGTAAGTAGCTCTACTGCTGGGTTTGTTTGTGAAATTTGTCTTGAAACATAA

Coding sequence (CDS)

ATGGCCGGACCAGAATCATCCGTAGCTAAGGAATTGGGTTTTTCCCGCACATCGGCGGCAGAGAAGAAAGATGAAGAACTTACTTCCATGTCTGAGAATCAGGAACCGCCAAATCCGGCGTCTGTGGCTGAAGCAGGGCCACCGCATGAGGCGTTGTTTCATGTTATGACTTATCTTCCTCTCTTTGAGCTTCTTTCCCTGAGCGCAGTCTGTGTATCGCTGAGAGACGCAGTGGAACATGATGTGTTGCCGTGGCTTCACATCGTCGTCGATGGGCGATTGAGCTCCCGGTTGTCCGATTACACTCTGGGGAGAATTGCCCGGAAGGCGAGTGGCCGCCTTAGAACTTTGGCTTTGATCAACTGTTTCAAGATTTCAGATTCTGGACTTCACGAAGTTGTTGAGAACAATCCTCTTCTCACCAAGCTTTATGTACCCGGATGCACTAGTTTGACTCCTGAGGGAGTGGTTAGAGCAGTGAAGACTTTGTCCCAAGATTCTCACAATTTGAAGAATTTAATGATTGGTGGCATTTACAACATAGAGAACCAACACCTTGAAGTCCTCAGATCCCATCTTCTTGAAAACCGATCACTGAACAAGCAGCAGGAGTGGCGACAGGTACACCATCTGTATCATGAGCACGTGGACCGGCCGAGGTTGTTGAGTAGCGATTTCCTGCCAGTGATTGATGTACAAATCTGCCCAAAATGCTATGACATAAGGAATGTCTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGGAGAGAATTTGCTGGCAGATTGCCGGGGTTGCATTTGTTGCATTCCAAGGTGTGAAGAATGCGGCGGATGCGTGGATGATGATGAAATAGAAGAGGCTATATGTTCAGATATCTTGTGTTCAAGTTGCTGGTTTCAACTTCCCAAATGCAACCATTGTAATAGGCCATATTGCAAGCGACACCGTGATAATGTAAGTAGCTCTACTGCTGGGTTTGTTTGTGAAATTTGTCTTGAAACATAA

Protein sequence

MAGPESSVAKELGFSRTSAAEKKDEELTSMSENQEPPNPASVAEAGPPHEALFHVMTYLPLFELLSLSAVCVSLRDAVEHDVLPWLHIVVDGRLSSRLSDYTLGRIARKASGRLRTLALINCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKTLSQDSHNLKNLMIGGIYNIENQHLEVLRSHLLENRSLNKQQEWRQVHHLYHEHVDRPRLLSSDFLPVIDVQICPKCYDIRNVYDCSRERCKIKQGENLLADCRGCICCIPRCEECGGCVDDDEIEEAICSDILCSSCWFQLPKCNHCNRPYCKRHRDNVSSSTAGFVCEICLET*
Homology
[Close]
BLAST of Csa5G566290 vs. Swiss-Prot
Match: SKI28_ARATH (F-box protein SKIP28 OS=Arabidopsis thaliana GN=SKIP28 PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 3.5e-55
Identity = 118/297 (39.73%), Postives = 161/297 (54.21%), Query Frame = 1 

Query: 49  HEALFHVMTYL-PLFELLSLSAVCVSLRDAVEHDVLPWLHIVVDGRLSSRLSDYTLGRIA 108
           HE L  V+ YL  LFELLS+  V  SLRDA+  +   W  +V++  LSSRL+D  L   +
Sbjct: 17  HEVLLIVLPYLHSLFELLSMIRVSRSLRDAIRDETALWTKLVIEPPLSSRLTDDILSEFS 76

Query: 109 RKASGRLRTLALINCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKTLSQDS 168
            K++G+L+TL L  C  +++ GL  VV+ NPL+TK+ VPGC+ LTPEG++  V++LS+++
Sbjct: 77  SKSAGKLKTLILRQCLMVTNKGLRRVVDANPLITKIIVPGCSGLTPEGIMECVESLSKNN 136

Query: 169 HNLKNLMIGGIYNIENQHLEVLRSHLLENRSLNKQQEWRQVHHLYHEHVDRPRLLSSDFL 228
           H L+ L I G+     QHL  L ++                             LSS+  
Sbjct: 137 HKLETLHINGVNGFTKQHLSALYTY-----------------------------LSSE-- 196

Query: 229 PVIDVQICPKCYDIRNVYDCSRERCKIKQGENLLADCRGCICCIPRCEECGGCV--DDDE 288
             ID+++CPKC ++R +  CSRE C  KQ +     CRGC  CIPRC EC  C+   D E
Sbjct: 197 GTIDLEVCPKCDEVRMIPSCSRESCNQKQRK-----CRGCWLCIPRCAECAVCLVGSDTE 256

Query: 289 IEEAIC--SDILCSSCWFQLPKCNHCNRPYCKRHRD-------NVSSSTAGFVCEIC 334
            +EA C   D+LC  CW  LPKC  CN+PYC  H           ++S   F CE C
Sbjct: 257 SQEAACGNDDVLCLECWLVLPKCRFCNKPYCTNHSSRRHEIAITDAASRPSFECEAC 277

[Close]
BLAST of Csa5G566290 vs. Swiss-Prot
Match: SKI14_ARATH (F-box protein SKIP14 OS=Arabidopsis thaliana GN=SKIP14 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.2e-35
Identity = 85/258 (32.95%), Postives = 135/258 (52.33%), Query Frame = 1 

Query: 49  HEALFHVMTYLPLFELLSLSAVCVSLRDAVEHDVLPWLHIVVDGRLSSRLSDYTLGRIAR 108
           H A+   + +L   +LLS+S VC SL   V  D L W HI +   L+ ++++  L  +  
Sbjct: 201 HPAIGFCLYHLRGKDLLSVSMVCKSLHTTVCDDTLLWKHIHICRPLNEKITEEALLHLTE 260

Query: 109 KASGRLRTLALINCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKTL-SQDS 168
           +A G ++ L +++C +I+D  L  VV  N  + K+ VPGCT +T +G++  ++ L S   
Sbjct: 261 RAQGTMQCLRIVDCCRITDDCLKRVVARNRQVVKIGVPGCTRITIDGILSVLRDLKSAGK 320

Query: 169 HNLKNLMIGGIYNIENQHLEVLRSHLLENRSLNKQQEWRQVHHLYHEHVDRPRLLSSDFL 228
             +K+L + G++ +   H + L   L  +   NK ++  Q    YH        +S D  
Sbjct: 321 LQVKHLQLRGLFGVTKDHYDELIDLLNID---NKVKQTIQKPRFYHR---GEACVSCDDD 380

Query: 229 PVIDVQICPKCYDIRNVYDCSRERCKIKQGENLLADCRGCICCIPRCEECGGCVDDDEIE 288
             +D+++CPKC + + VYDC  E CK K+  +   +CR C  CI RC  CG C+ D E E
Sbjct: 381 RALDIEMCPKCQNFKLVYDCPAEDCKGKKKGS--EECRACSLCIQRCYHCGRCIIDTEYE 440

Query: 289 EAICSDILCSSCWFQLPK 306
           E  C ++LC+ C    PK
Sbjct: 441 EMFCLELLCAVCSKPTPK 450

[Close]
BLAST of Csa5G566290 vs. Swiss-Prot
Match: FB327_ARATH (F-box protein At3g27290 OS=Arabidopsis thaliana GN=At3g27290 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-29
Identity = 86/257 (33.46%), Postives = 130/257 (50.58%), Query Frame = 1 

Query: 46  GPPHEALFHVMTYLPLFELLSLSAVCVSLRDAVEHDVLPWLHIVV-DGRLSSRLSDYTLG 105
           G  H+A   V+ YL L E+L++  VC SLRD+V  +   W  I + D  L  R++D +L 
Sbjct: 125 GEAHDAFELVLPYLELKEILAVEVVCRSLRDSVGKEPFFWTSIDLNDSFLQYRVTDESLL 184

Query: 106 RIARKASGRLRTLALINCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKTL- 165
           ++ R+A G +R L L  C  I+D GL +V+ +NP LTKL V GC  L+  G+V  ++ L 
Sbjct: 185 KLTRRALGGVRCLNLGGCVGITDYGLKQVLASNPHLTKLSVSGCLRLSTAGLVSTLRDLK 244

Query: 166 SQDSHNLKNLMIGGIYNIENQHLEVLRSHLLENRSLNKQQEWRQVHHLYHEHVDRPRLLS 225
           S +   +K+L+ GG      +  + L   L  +  +  Q+  ++    ++        L 
Sbjct: 245 SSNRLGVKSLITGGALYFTKEQFKELNLLLGGDAKVGLQERKKR----FYTSCRSEFYLE 304

Query: 226 SDFLPVIDVQICPKCYDIRNVYDCSRERCKIK-QGENLLADCRGCICCIPRCEECGGCVD 285
            D   V D++ICP C     V+DC  + C +K Q     + CR C+ CI RC ECG C++
Sbjct: 305 DD--RVTDLEICPWCEKPSLVFDCPADTCPLKGQYPYSKSSCRACVVCIERCHECGSCLN 364

Query: 286 DDEIEEAICSDILCSSC 300
           D E  +  C    C  C
Sbjct: 365 DCE-NKPFCFAFSCVVC 374

[Close]
BLAST of Csa5G566290 vs. TrEMBL
Match: A0A0A0KSU6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G566290 PE=4 SV=1)

HSP 1 Score: 701.0 bits (1808), Expect = 6.8e-199
Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 1 

Query: 1   MAGPESSVAKELGFSRTSAAEKKDEELTSMSENQEPPNPASVAEAGPPHEALFHVMTYLP 60
           MAGPESSVAKELGFSRTSAAEKKDEELTSMSENQEPPNPASVAEAGPPHEALFHVMTYLP
Sbjct: 1   MAGPESSVAKELGFSRTSAAEKKDEELTSMSENQEPPNPASVAEAGPPHEALFHVMTYLP 60

Query: 61  LFELLSLSAVCVSLRDAVEHDVLPWLHIVVDGRLSSRLSDYTLGRIARKASGRLRTLALI 120
           LFELLSLSAVCVSLRDAVEHDVLPWLHIVVDGRLSSRLSDYTLGRIARKASGRLRTLALI
Sbjct: 61  LFELLSLSAVCVSLRDAVEHDVLPWLHIVVDGRLSSRLSDYTLGRIARKASGRLRTLALI 120

Query: 121 NCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKTLSQDSHNLKNLMIGGIYN 180
           NCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKTLSQDSHNLKNLMIGGIYN
Sbjct: 121 NCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKTLSQDSHNLKNLMIGGIYN 180

Query: 181 IENQHLEVLRSHLLENRSLNKQQEWRQVHHLYHEHVDRPRLLSSDFLPVIDVQICPKCYD 240
           IENQHLEVLRSHLLENRSLNKQQEWRQVHHLYHEHVDRPRLLSSDFLPVIDVQICPKCYD
Sbjct: 181 IENQHLEVLRSHLLENRSLNKQQEWRQVHHLYHEHVDRPRLLSSDFLPVIDVQICPKCYD 240

Query: 241 IRNVYDCSRERCKIKQGENLLADCRGCICCIPRCEECGGCVDDDEIEEAICSDILCSSCW 300
           IRNVYDCSRERCKIKQGENLLADCRGCICCIPRCEECGGCVDDDEIEEAICSDILCSSCW
Sbjct: 241 IRNVYDCSRERCKIKQGENLLADCRGCICCIPRCEECGGCVDDDEIEEAICSDILCSSCW 300

Query: 301 FQLPKCNHCNRPYCKRHRDNVSSSTAGFVCEICLET 337
           FQLPKCNHCNRPYCKRHRDNVSSSTAGFVCEICLET
Sbjct: 301 FQLPKCNHCNRPYCKRHRDNVSSSTAGFVCEICLET 336

[Close]
BLAST of Csa5G566290 vs. TrEMBL
Match: B9SP54_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0628400 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 4.7e-91
Identity = 167/293 (57.00%), Postives = 213/293 (72.70%), Query Frame = 1 

Query: 43  AEAGPPHEALFHVMTYLPLFELLSLSAVCVSLRDAVEHDVLPWLHIVVDGRLSSRLSDYT 102
           AE GPPHEALF V+ YLP+FELL++S VC+SLRDAV  D+LPWL I+VD  LSSRLSD  
Sbjct: 40  AEPGPPHEALFLVLAYLPVFELLNMSEVCMSLRDAVNRDLLPWLTIIVDRPLSSRLSDEI 99

Query: 103 LGRIARKASGRLRTLALINCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKT 162
           L +IA KA+ RLRTL L NC KI+D GL +V+E NP + KL++P CT LTPEG+++AVK 
Sbjct: 100 LMKIASKANCRLRTLILRNCTKITDDGLEKVIEKNPYINKLHLPACTGLTPEGIIKAVKI 159

Query: 163 LSQDSHNLKNLMIGGIYNIENQHLEVLRSHLLENRSLNKQQEWRQVHHLYHEHVDRPRLL 222
           LSQ  ++LK+L I GIYN++ QHLE L S+L  N S +K Q     H LYH +   P   
Sbjct: 160 LSQHPNSLKSLQINGIYNLKKQHLETLYSYLQMNPSQHKPQ-----HILYHIYRISPSSR 219

Query: 223 SSDFLPVIDVQICPKCYDIRNVYDCSRERCKIKQGENLLADCRGCICCIPRCEECGGCVD 282
           S++   ++DV ICP+C +++ V+DCSRE C  K+ + L+ADCRGC  CI RCEECGGC+D
Sbjct: 220 STESGRIVDVDICPQCNEVQIVFDCSRETCMQKR-DRLVADCRGCNFCISRCEECGGCID 279

Query: 283 DDEIEEAICSDILCSSCWFQLPKCNHCNRPYCKRHRDNVSSST--AGFVCEIC 334
            +E E+A C+DILCS CW  L KCN+CN+PYCKRH +   SS    GF+CE C
Sbjct: 280 AEEQEDAACADILCSDCWLCLSKCNYCNKPYCKRHTNQQFSSPGFCGFICEAC 326

[Close]
BLAST of Csa5G566290 vs. TrEMBL
Match: V4U659_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015846mg PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.1e-87
Identity = 155/292 (53.08%), Postives = 211/292 (72.26%), Query Frame = 1 

Query: 44  EAGPPHEALFHVMTYLPLFELLSLSAVCVSLRDAVEHDVLPWLHIVVDGRLSSRLSDYTL 103
           E  PPHEALF  + YLPLFELL++S VC+SLRDAV  D+LPWL+I+VD  L+ RLSD  L
Sbjct: 39  EPRPPHEALFLALAYLPLFELLAMSVVCLSLRDAVNKDILPWLNIIVDRPLNRRLSDEIL 98

Query: 104 GRIARKASGRLRTLALINCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKTL 163
            +I  KA+GRL TLALINC +I+++GL  V+E NP + KLY+PGCT L+P+GV+ AV+ L
Sbjct: 99  MKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKL 158

Query: 164 SQDSHNLKNLMIGGIYNIENQHLEVLRSHLLENRSLNKQQEWRQVHHLYHEHVDRPRLLS 223
           S++ H L+ L I G+YNI  +HL  L SHL  N S  +Q E ++   LYH+    P L++
Sbjct: 159 SENDHTLEILHISGVYNITKEHLRTLHSHLKLNSS--RQNEQKRQPILYHKARHYPVLVN 218

Query: 224 SDFLPVIDVQICPKCYDIRNVYDCSRERCKIKQGENLLADCRGCICCIPRCEECGGCVDD 283
            +    IDV+ICP C ++R V+DCS++ CK   G+     CRGC  CIPRC ECGGC+  
Sbjct: 219 RENDHSIDVEICPSCSEVRMVFDCSKQLCK---GKPPARCCRGCYHCIPRCAECGGCIQP 278

Query: 284 DEIEEAICSDILCSSCWFQLPKCNHCNRPYCKRHRD--NVSSSTAGFVCEIC 334
           +E+E+A+C+D+LCS CW QLPKCN CN+PYC++H +  + SS ++GF+C+IC
Sbjct: 279 EEMEDAVCNDMLCSDCWLQLPKCNLCNKPYCRQHANLGSNSSCSSGFICDIC 325

[Close]
BLAST of Csa5G566290 vs. TrEMBL
Match: A0A067FMA3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020465mg PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.1e-87
Identity = 155/292 (53.08%), Postives = 211/292 (72.26%), Query Frame = 1 

Query: 44  EAGPPHEALFHVMTYLPLFELLSLSAVCVSLRDAVEHDVLPWLHIVVDGRLSSRLSDYTL 103
           E  PPHEALF  + YLPLFELL++S VC+SLRDAV  D+LPWL+I+VD  L+ RLSD  L
Sbjct: 26  EPRPPHEALFLALAYLPLFELLAMSVVCLSLRDAVNKDILPWLNIIVDRPLNRRLSDEIL 85

Query: 104 GRIARKASGRLRTLALINCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKTL 163
            +I  KA+GRL TLALINC +I+++GL  V+E NP + KLY+PGCT L+P+GV+ AV+ L
Sbjct: 86  MKITSKANGRLTTLALINCVRITNAGLQRVIEKNPFIKKLYIPGCTGLSPQGVIEAVEKL 145

Query: 164 SQDSHNLKNLMIGGIYNIENQHLEVLRSHLLENRSLNKQQEWRQVHHLYHEHVDRPRLLS 223
           S++ H L+ L I G+YNI  +HL  L SHL  N S  +Q E ++   LYH+    P L++
Sbjct: 146 SENDHTLEILHISGVYNITKEHLRTLHSHLKLNSS--RQNEQKRQPILYHKARHYPVLVN 205

Query: 224 SDFLPVIDVQICPKCYDIRNVYDCSRERCKIKQGENLLADCRGCICCIPRCEECGGCVDD 283
            +    IDV+ICP C ++R V+DCS++ CK   G+     CRGC  CIPRC ECGGC+  
Sbjct: 206 RENDHSIDVEICPSCSEVRMVFDCSKQLCK---GKPPARCCRGCYHCIPRCAECGGCIQP 265

Query: 284 DEIEEAICSDILCSSCWFQLPKCNHCNRPYCKRHRD--NVSSSTAGFVCEIC 334
           +E+E+A+C+D+LCS CW QLPKCN CN+PYC++H +  + SS ++GF+C+IC
Sbjct: 266 EEMEDAVCNDMLCSDCWLQLPKCNLCNKPYCRQHANLGSNSSCSSGFICDIC 312

[Close]
BLAST of Csa5G566290 vs. TrEMBL
Match: A0A061E7T8_THECC (RNI-like superfamily protein, putative OS=Theobroma cacao GN=TCM_011014 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 7.0e-87
Identity = 159/293 (54.27%), Postives = 210/293 (71.67%), Query Frame = 1 

Query: 43  AEAGPPHEALFHVMTYLPLFELLSLSAVCVSLRDAVEHDVLPWLHIVVDGRLSSRLSDYT 102
           AEAG PHEALF V+ YLPLFELL++S VC+SLRDAVE DVLPWL+I+V+  L+ RLSD  
Sbjct: 24  AEAGSPHEALFLVLAYLPLFELLAMSEVCMSLRDAVEKDVLPWLNIIVERPLNLRLSDEI 83

Query: 103 LGRIARKASGRLRTLALINCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKT 162
           L ++A KA+GRLRTLALINC  ISD GL  V++ NPL+ +LYVPGCT LTP GV+RAV+ 
Sbjct: 84  LMKVASKANGRLRTLALINCAWISDDGLQRVIDKNPLINELYVPGCTGLTPNGVIRAVQK 143

Query: 163 LSQDSHNLKNLMIGGIYNIENQHLEVLRSHLLENRSLNKQQEWRQVHHLYHEHVDRPRLL 222
           LS+  H+LK L I GIYN++ +HLE L  ++L N++  +Q + +Q   LYH         
Sbjct: 144 LSEHHHSLKRLQINGIYNMKKEHLETLHYYMLTNQT-KQQVQKKQRPLLYHNFRKFQAYR 203

Query: 223 SSDFLPVIDVQICPKCYDIRNVYDCSRERCKIKQGENLLADCRGCICCIPRCEECGGCVD 282
             +F  +IDV+ICP+C ++R V+DC RE C+  + +  L DCR C  CIPRCEECG CV 
Sbjct: 204 WDEFGRIIDVEICPRCSEVRMVFDCPREECRRTREQYSLIDCRMCKFCIPRCEECGRCVK 263

Query: 283 DDEIEEAICSDILCSSCWFQLPKCNHCNRPYCKRHRD-NVSSS-TAGFVCEIC 334
            +++E A+C+D LCS CW QL KCN CN+P C +H D  +SSS +  ++C +C
Sbjct: 264 PEDLEVAVCTDTLCSDCWVQLSKCNFCNKPCCGQHADLQISSSGSTEWICGVC 315

[Close]
BLAST of Csa5G566290 vs. TAIR10
Match: AT2G01620.1 (AT2G01620.1 RNI-like superfamily protein)

HSP 1 Score: 216.9 bits (551), Expect = 2.0e-56
Identity = 118/297 (39.73%), Postives = 161/297 (54.21%), Query Frame = 1 

Query: 49  HEALFHVMTYL-PLFELLSLSAVCVSLRDAVEHDVLPWLHIVVDGRLSSRLSDYTLGRIA 108
           HE L  V+ YL  LFELLS+  V  SLRDA+  +   W  +V++  LSSRL+D  L   +
Sbjct: 17  HEVLLIVLPYLHSLFELLSMIRVSRSLRDAIRDETALWTKLVIEPPLSSRLTDDILSEFS 76

Query: 109 RKASGRLRTLALINCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKTLSQDS 168
            K++G+L+TL L  C  +++ GL  VV+ NPL+TK+ VPGC+ LTPEG++  V++LS+++
Sbjct: 77  SKSAGKLKTLILRQCLMVTNKGLRRVVDANPLITKIIVPGCSGLTPEGIMECVESLSKNN 136

Query: 169 HNLKNLMIGGIYNIENQHLEVLRSHLLENRSLNKQQEWRQVHHLYHEHVDRPRLLSSDFL 228
           H L+ L I G+     QHL  L ++                             LSS+  
Sbjct: 137 HKLETLHINGVNGFTKQHLSALYTY-----------------------------LSSE-- 196

Query: 229 PVIDVQICPKCYDIRNVYDCSRERCKIKQGENLLADCRGCICCIPRCEECGGCV--DDDE 288
             ID+++CPKC ++R +  CSRE C  KQ +     CRGC  CIPRC EC  C+   D E
Sbjct: 197 GTIDLEVCPKCDEVRMIPSCSRESCNQKQRK-----CRGCWLCIPRCAECAVCLVGSDTE 256

Query: 289 IEEAIC--SDILCSSCWFQLPKCNHCNRPYCKRHRD-------NVSSSTAGFVCEIC 334
            +EA C   D+LC  CW  LPKC  CN+PYC  H           ++S   F CE C
Sbjct: 257 SQEAACGNDDVLCLECWLVLPKCRFCNKPYCTNHSSRRHEIAITDAASRPSFECEAC 277

[Close]
BLAST of Csa5G566290 vs. TAIR10
Match: AT3G26000.1 (AT3G26000.1 Ribonuclease inhibitor)

HSP 1 Score: 149.8 bits (377), Expect = 3.0e-36
Identity = 85/258 (32.95%), Postives = 135/258 (52.33%), Query Frame = 1 

Query: 49  HEALFHVMTYLPLFELLSLSAVCVSLRDAVEHDVLPWLHIVVDGRLSSRLSDYTLGRIAR 108
           H A+   + +L   +LLS+S VC SL   V  D L W HI +   L+ ++++  L  +  
Sbjct: 201 HPAIGFCLYHLRGKDLLSVSMVCKSLHTTVCDDTLLWKHIHICRPLNEKITEEALLHLTE 260

Query: 109 KASGRLRTLALINCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKTL-SQDS 168
           +A G ++ L +++C +I+D  L  VV  N  + K+ VPGCT +T +G++  ++ L S   
Sbjct: 261 RAQGTMQCLRIVDCCRITDDCLKRVVARNRQVVKIGVPGCTRITIDGILSVLRDLKSAGK 320

Query: 169 HNLKNLMIGGIYNIENQHLEVLRSHLLENRSLNKQQEWRQVHHLYHEHVDRPRLLSSDFL 228
             +K+L + G++ +   H + L   L  +   NK ++  Q    YH        +S D  
Sbjct: 321 LQVKHLQLRGLFGVTKDHYDELIDLLNID---NKVKQTIQKPRFYHR---GEACVSCDDD 380

Query: 229 PVIDVQICPKCYDIRNVYDCSRERCKIKQGENLLADCRGCICCIPRCEECGGCVDDDEIE 288
             +D+++CPKC + + VYDC  E CK K+  +   +CR C  CI RC  CG C+ D E E
Sbjct: 381 RALDIEMCPKCQNFKLVYDCPAEDCKGKKKGS--EECRACSLCIQRCYHCGRCIIDTEYE 440

Query: 289 EAICSDILCSSCWFQLPK 306
           E  C ++LC+ C    PK
Sbjct: 441 EMFCLELLCAVCSKPTPK 450

[Close]
BLAST of Csa5G566290 vs. TAIR10
Match: AT3G27290.1 (AT3G27290.1 RNI-like superfamily protein)

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-30
Identity = 86/257 (33.46%), Postives = 130/257 (50.58%), Query Frame = 1 

Query: 46  GPPHEALFHVMTYLPLFELLSLSAVCVSLRDAVEHDVLPWLHIVV-DGRLSSRLSDYTLG 105
           G  H+A   V+ YL L E+L++  VC SLRD+V  +   W  I + D  L  R++D +L 
Sbjct: 125 GEAHDAFELVLPYLELKEILAVEVVCRSLRDSVGKEPFFWTSIDLNDSFLQYRVTDESLL 184

Query: 106 RIARKASGRLRTLALINCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKTL- 165
           ++ R+A G +R L L  C  I+D GL +V+ +NP LTKL V GC  L+  G+V  ++ L 
Sbjct: 185 KLTRRALGGVRCLNLGGCVGITDYGLKQVLASNPHLTKLSVSGCLRLSTAGLVSTLRDLK 244

Query: 166 SQDSHNLKNLMIGGIYNIENQHLEVLRSHLLENRSLNKQQEWRQVHHLYHEHVDRPRLLS 225
           S +   +K+L+ GG      +  + L   L  +  +  Q+  ++    ++        L 
Sbjct: 245 SSNRLGVKSLITGGALYFTKEQFKELNLLLGGDAKVGLQERKKR----FYTSCRSEFYLE 304

Query: 226 SDFLPVIDVQICPKCYDIRNVYDCSRERCKIK-QGENLLADCRGCICCIPRCEECGGCVD 285
            D   V D++ICP C     V+DC  + C +K Q     + CR C+ CI RC ECG C++
Sbjct: 305 DD--RVTDLEICPWCEKPSLVFDCPADTCPLKGQYPYSKSSCRACVVCIERCHECGSCLN 364

Query: 286 DDEIEEAICSDILCSSC 300
           D E  +  C    C  C
Sbjct: 365 DCE-NKPFCFAFSCVVC 374

[Close]
BLAST of Csa5G566290 vs. NCBI nr
Match: gi|449464814|ref|XP_004150124.1| (PREDICTED: F-box protein SKIP28 [Cucumis sativus])

HSP 1 Score: 701.0 bits (1808), Expect = 9.7e-199
Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 1 

Query: 1   MAGPESSVAKELGFSRTSAAEKKDEELTSMSENQEPPNPASVAEAGPPHEALFHVMTYLP 60
           MAGPESSVAKELGFSRTSAAEKKDEELTSMSENQEPPNPASVAEAGPPHEALFHVMTYLP
Sbjct: 1   MAGPESSVAKELGFSRTSAAEKKDEELTSMSENQEPPNPASVAEAGPPHEALFHVMTYLP 60

Query: 61  LFELLSLSAVCVSLRDAVEHDVLPWLHIVVDGRLSSRLSDYTLGRIARKASGRLRTLALI 120
           LFELLSLSAVCVSLRDAVEHDVLPWLHIVVDGRLSSRLSDYTLGRIARKASGRLRTLALI
Sbjct: 61  LFELLSLSAVCVSLRDAVEHDVLPWLHIVVDGRLSSRLSDYTLGRIARKASGRLRTLALI 120

Query: 121 NCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKTLSQDSHNLKNLMIGGIYN 180
           NCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKTLSQDSHNLKNLMIGGIYN
Sbjct: 121 NCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKTLSQDSHNLKNLMIGGIYN 180

Query: 181 IENQHLEVLRSHLLENRSLNKQQEWRQVHHLYHEHVDRPRLLSSDFLPVIDVQICPKCYD 240
           IENQHLEVLRSHLLENRSLNKQQEWRQVHHLYHEHVDRPRLLSSDFLPVIDVQICPKCYD
Sbjct: 181 IENQHLEVLRSHLLENRSLNKQQEWRQVHHLYHEHVDRPRLLSSDFLPVIDVQICPKCYD 240

Query: 241 IRNVYDCSRERCKIKQGENLLADCRGCICCIPRCEECGGCVDDDEIEEAICSDILCSSCW 300
           IRNVYDCSRERCKIKQGENLLADCRGCICCIPRCEECGGCVDDDEIEEAICSDILCSSCW
Sbjct: 241 IRNVYDCSRERCKIKQGENLLADCRGCICCIPRCEECGGCVDDDEIEEAICSDILCSSCW 300

Query: 301 FQLPKCNHCNRPYCKRHRDNVSSSTAGFVCEICLET 337
           FQLPKCNHCNRPYCKRHRDNVSSSTAGFVCEICLET
Sbjct: 301 FQLPKCNHCNRPYCKRHRDNVSSSTAGFVCEICLET 336

[Close]
BLAST of Csa5G566290 vs. NCBI nr
Match: gi|659072821|ref|XP_008467112.1| (PREDICTED: F-box protein SKIP28 isoform X1 [Cucumis melo])

HSP 1 Score: 603.6 bits (1555), Expect = 2.1e-169
Identity = 285/307 (92.83%), Postives = 294/307 (95.77%), Query Frame = 1 

Query: 30  MSENQEPPNPASVAEAGPPHEALFHVMTYLPLFELLSLSAVCVSLRDAVEHDVLPWLHIV 89
           MSENQEPPNPA+VAEAGPPHEALFHV++YL LFELLS+SAVCVSLRDAVEHDVLPWLHIV
Sbjct: 1   MSENQEPPNPAAVAEAGPPHEALFHVVSYLSLFELLSMSAVCVSLRDAVEHDVLPWLHIV 60

Query: 90  VDGRLSSRLSDYTLGRIARKASGRLRTLALINCFKISDSGLHEVVENNPLLTKLYVPGCT 149
           VDGRLSSRLSDYTLGRIARKA GRLRTLALI+CFKISDSGLHEVVENNPLLTKLYVPGCT
Sbjct: 61  VDGRLSSRLSDYTLGRIARKAGGRLRTLALIDCFKISDSGLHEVVENNPLLTKLYVPGCT 120

Query: 150 SLTPEGVVRAVKTLSQDSHNLKNLMIGGIYNIENQHLEVLRSHLLENRSLNKQQEWRQVH 209
           SLTP GVVRAVKT SQ SHNLKNLMIGGIYNIEN HLEVLRSHLLENRS NKQQEWRQVH
Sbjct: 121 SLTPAGVVRAVKTSSQHSHNLKNLMIGGIYNIENHHLEVLRSHLLENRSQNKQQEWRQVH 180

Query: 210 HLYHEHVDRPRLLSSDFLPVIDVQICPKCYDIRNVYDCSRERCKIKQGENLLADCRGCIC 269
           HLYHEHVDRP LLS+DFLP+IDVQICPKCYDIRNVYDCSRERCKIKQGENLLADCRGCI 
Sbjct: 181 HLYHEHVDRPNLLSNDFLPLIDVQICPKCYDIRNVYDCSRERCKIKQGENLLADCRGCIS 240

Query: 270 CIPRCEECGGCVDDDEIEEAICSDILCSSCWFQLPKCNHCNRPYCKRHRDNVSSSTAGFV 329
           C+PRCEECGGCVD DEIEEAIC  I+CSSCW QLPKCNHCNRPYCKRHRDNVSSSTAGFV
Sbjct: 241 CMPRCEECGGCVDVDEIEEAICPGIVCSSCWLQLPKCNHCNRPYCKRHRDNVSSSTAGFV 300

Query: 330 CEICLET 337
           CEICLET
Sbjct: 301 CEICLET 307

[Close]
BLAST of Csa5G566290 vs. NCBI nr
Match: gi|659072823|ref|XP_008467113.1| (PREDICTED: F-box protein SKIP28 isoform X2 [Cucumis melo])

HSP 1 Score: 572.0 bits (1473), Expect = 6.8e-160
Identity = 269/291 (92.44%), Postives = 278/291 (95.53%), Query Frame = 1 

Query: 30  MSENQEPPNPASVAEAGPPHEALFHVMTYLPLFELLSLSAVCVSLRDAVEHDVLPWLHIV 89
           MSENQEPPNPA+VAEAGPPHEALFHV++YL LFELLS+SAVCVSLRDAVEHDVLPWLHIV
Sbjct: 1   MSENQEPPNPAAVAEAGPPHEALFHVVSYLSLFELLSMSAVCVSLRDAVEHDVLPWLHIV 60

Query: 90  VDGRLSSRLSDYTLGRIARKASGRLRTLALINCFKISDSGLHEVVENNPLLTKLYVPGCT 149
           VDGRLSSRLSDYTLGRIARKA GRLRTLALI+CFKISDSGLHEVVENNPLLTKLYVPGCT
Sbjct: 61  VDGRLSSRLSDYTLGRIARKAGGRLRTLALIDCFKISDSGLHEVVENNPLLTKLYVPGCT 120

Query: 150 SLTPEGVVRAVKTLSQDSHNLKNLMIGGIYNIENQHLEVLRSHLLENRSLNKQQEWRQVH 209
           SLTP GVVRAVKT SQ SHNLKNLMIGGIYNIEN HLEVLRSHLLENRS NKQQEWRQVH
Sbjct: 121 SLTPAGVVRAVKTSSQHSHNLKNLMIGGIYNIENHHLEVLRSHLLENRSQNKQQEWRQVH 180

Query: 210 HLYHEHVDRPRLLSSDFLPVIDVQICPKCYDIRNVYDCSRERCKIKQGENLLADCRGCIC 269
           HLYHEHVDRP LLS+DFLP+IDVQICPKCYDIRNVYDCSRERCKIKQGENLLADCRGCI 
Sbjct: 181 HLYHEHVDRPNLLSNDFLPLIDVQICPKCYDIRNVYDCSRERCKIKQGENLLADCRGCIS 240

Query: 270 CIPRCEECGGCVDDDEIEEAICSDILCSSCWFQLPKCNHCNRPYCKRHRDN 321
           C+PRCEECGGCVD DEIEEAIC  I+CSSCW QLPKCNHCNRPYCKRHRDN
Sbjct: 241 CMPRCEECGGCVDVDEIEEAICPGIVCSSCWLQLPKCNHCNRPYCKRHRDN 291

[Close]
BLAST of Csa5G566290 vs. NCBI nr
Match: gi|470122852|ref|XP_004297452.1| (PREDICTED: F-box protein SKIP28 [Fragaria vesca subsp. vesca])

HSP 1 Score: 351.3 bits (900), Expect = 1.9e-93
Identity = 170/318 (53.46%), Postives = 223/318 (70.13%), Query Frame = 1 

Query: 21  EKKDEELTSMSENQEPPNPASVA---EAGPPHEALFHVMTYLPLFELLSLSAVCVSLRDA 80
           E ++ E    S  + P  P+      EAGPPHEALF ++TYLPLFELL+++ VC +LRDA
Sbjct: 8   ESQEHEAVDKSAQKVPILPSDAIKEKEAGPPHEALFLILTYLPLFELLAMNQVCTTLRDA 67

Query: 81  VEHDVLPWLHIVVDGRLSSRLSDYTLGRIARKASGRLRTLALINCFKISDSGLHEVVENN 140
           V  DV+ WL+I+V+  LS +LSD  L ++  KA+GRLR+LAL+ C KI+D+GL +VVE N
Sbjct: 68  VNKDVISWLNIMVEKPLSLKLSDAILMKLTSKANGRLRSLALMKCAKITDNGLQQVVEQN 127

Query: 141 PLLTKLYVPGCTSLTPEGVVRAVKTLSQDSHNLKNLMIGGIYNIENQHLEVLRSHLLENR 200
           PL++KLY+P CT LTPEGV++AVKTLS+  H LK++MI GIYNI  QHLE LRS+L E  
Sbjct: 128 PLISKLYLPACTGLTPEGVIQAVKTLSEHGHCLKSIMINGIYNINKQHLETLRSYLDEMN 187

Query: 201 SLNKQQEWRQVHHLYHEHVDRPRLLSSDFLPVIDVQICPKCYDIRNVYDCSRERCKIKQG 260
              K+++      L+ E++D P L        ID+++CPKC ++R V+DC R  CK +  
Sbjct: 188 LDTKKEQPGSCPLLFLEYMDSPTLRHDKGHTTIDLEVCPKCDEVRMVFDCPRWACK-RML 247

Query: 261 ENLLADCRGCICCIPRCEECGGCVDDDEIEEAICSDILCSSCWFQLPKCNHCNRPYCKRH 320
           E  + +CRGC  CI RC ECGGCVD  EIEEA+C DILCS CW  LPKCN CN+PYCK+H
Sbjct: 248 ERSVTECRGCKFCILRCLECGGCVDSQEIEEAVCGDILCSDCWLHLPKCNFCNKPYCKQH 307

Query: 321 RDN--VSSSTAGFVCEIC 334
            DN   +S + GFVCE+C
Sbjct: 308 SDNKCSTSGSTGFVCEVC 324

[Close]
BLAST of Csa5G566290 vs. NCBI nr
Match: gi|645229390|ref|XP_008221444.1| (PREDICTED: F-box protein SKIP28 [Prunus mume])

HSP 1 Score: 349.4 bits (895), Expect = 7.2e-93
Identity = 169/293 (57.68%), Postives = 212/293 (72.35%), Query Frame = 1 

Query: 44  EAGPPHEALFHVMTYLPLFELLSLSAVCVSLRDAVEHDVLPWLHIVVDGRLSSRLSDYTL 103
           +AGPPH AL  +  YLPLFELL++S VC SLRDAV  DVL WL I V   L+ RLSD  L
Sbjct: 22  KAGPPHMALSLISAYLPLFELLAMSGVCTSLRDAVNKDVLSWLDIAVKSPLNLRLSDEIL 81

Query: 104 GRIARKASGRLRTLALINCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKTL 163
            +I  KA+GRLRTLAL++C KI+D GL  VVE NPL+ KLY+PGCT LTPEGV+ AVKTL
Sbjct: 82  MKITSKANGRLRTLALMDCAKITDDGLQRVVERNPLINKLYLPGCTGLTPEGVIGAVKTL 141

Query: 164 SQDSHNLKNLMIGGIYNIENQHLEVLRSHLLENRSLNKQQEWRQVHHLYHEHVDRPRLLS 223
           S+  H LK+LMI GIYNI  +HLE LR +L +N  L++Q++      L+HEH D P   +
Sbjct: 142 SEHHHGLKSLMINGIYNINKEHLETLRPYLEKN--LSQQEQSGSWPLLFHEHRDVPTFRN 201

Query: 224 SDFLPVIDVQICPKCYDIRNVYDCSRERCKIKQGENLLADCRGCICCIPRCEECGGCVDD 283
                 IDV++CPKC ++R V+DC R  CK K G + ++DCRGC  CIPRC+ECGGCVDD
Sbjct: 202 DKDYATIDVEVCPKCDEVRMVFDCPRRTCKRKIGRS-MSDCRGCNFCIPRCQECGGCVDD 261

Query: 284 -DEIEEAICSDILCSSCWFQLPKCNHCNRPYCKRHRDNVS--SSTAGFVCEIC 334
            +E+EEA+C+DILC  CW QLPKC+ CN+PYCK+H  N S    + GFVC++C
Sbjct: 262 SEEVEEAVCADILCLDCWLQLPKCDFCNKPYCKQHAHNGSCPPGSTGFVCDVC 311

The following BLAST results are available for this feature:
BLAST of Csa5G566290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SKI28_ARATH3.5e-5539.73F-box protein SKIP28 OS=Arabidopsis thaliana GN=SKIP28 PE=1 SV=1[more]
SKI14_ARATH5.2e-3532.95F-box protein SKIP14 OS=Arabidopsis thaliana GN=SKIP14 PE=1 SV=1[more]
FB327_ARATH2.5e-2933.46F-box protein At3g27290 OS=Arabidopsis thaliana GN=At3g27290 PE=2 SV=1[more]
BLAST of Csa5G566290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSU6_CUCSA6.8e-199100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G566290 PE=4 SV=1[more]
B9SP54_RICCO4.7e-9157.00Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0628400 PE=4 SV=1[more]
V4U659_9ROSI1.1e-8753.08Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015846mg PE=4 SV=1[more]
A0A067FMA3_CITSI1.1e-8753.08Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020465mg PE=4 SV=1[more]
A0A061E7T8_THECC7.0e-8754.27RNI-like superfamily protein, putative OS=Theobroma cacao GN=TCM_011014 PE=4 SV=... [more]
BLAST of Csa5G566290 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G01620.12.0e-5639.73 RNI-like superfamily protein[more]
AT3G26000.13.0e-3632.95 Ribonuclease inhibitor[more]
AT3G27290.11.4e-3033.46 RNI-like superfamily protein[more]
BLAST of Csa5G566290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464814|ref|XP_004150124.1|9.7e-199100.00PREDICTED: F-box protein SKIP28 [Cucumis sativus][more]
gi|659072821|ref|XP_008467112.1|2.1e-16992.83PREDICTED: F-box protein SKIP28 isoform X1 [Cucumis melo][more]
gi|659072823|ref|XP_008467113.1|6.8e-16092.44PREDICTED: F-box protein SKIP28 isoform X2 [Cucumis melo][more]
gi|470122852|ref|XP_004297452.1|1.9e-9353.46PREDICTED: F-box protein SKIP28 [Fragaria vesca subsp. vesca][more]
gi|645229390|ref|XP_008221444.1|7.2e-9357.68PREDICTED: F-box protein SKIP28 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR0179004Fe4S_Fe_S_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005575 cellular_component
cellular_component GO:0030286 dynein complex
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU166885cucumber EST collection version 3.0transcribed_cluster
CU174518cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G566290.1Csa5G566290.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU174518CU174518transcribed_cluster
CU166885CU166885transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF00646F-boxcoord: 48..88
score: 9.
IPR001810F-box domainPROFILEPS50181FBOXcoord: 41..88
score: 8
IPR001810F-box domainunknownSSF81383F-box domaincoord: 48..89
score: 1.2
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 137..162
score: 70.0coord: 111..136
score:
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved sitePROSITEPS001984FE4S_FER_1coord: 264..275
scor
NoneNo IPR availablePANTHERPTHR24006FAMILY NOT NAMEDcoord: 48..200
score: 2.8
NoneNo IPR availableunknownSSF52047RNI-likecoord: 106..199
score: 1.1