Cp4.1LG13g03560 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG13g03560
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	F-box protein family-like protein
Location	Cp4.1LG13 : 3612024 .. 3615308 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAGAACAAGAAATTCCCAAATCAGGTGGCCGTCTGCGGCAGTTCATCTCCCGGCGTTCGAATCGCGGCAGGGCCACCGCACGAGGCCTTATTTCTTGTACTGAGTTATCTTCCTCTATTTGAGATTCTTTCCATGGGCGCAGTCTGCGTATCGCTAAGAGACGCAGTGGAACACGATGTGTTGCCGTGGCTTCACCTCGCTGTCGATCGCCCCTTGAGCTCCCGGCTAAACGATTACATTCTGGAGCGAATCGCCCGAAAGGCCGATGGCCGCCTTCGAACCTTGGCTTTGATCAACTGCTTCAAGATTTCAGATTCTGCACTTCACGAAGTCGTTGAGAACAATCCCCTTCTCACCAAGGTATTTACATCTTCCTTTGAATGCTTGTGTTGATTGCTTAATCTAATGAATAATTTCTCCAAATTTGAGAGATGTATTCCTCCCTGTGACTCTCAATAATCCCCTCTCGAACAAAGTACATCATAGAACCTCCCTTGAATCCTATGCAGCCCTCGAACAACCTCTCTTTAATCGGGGTTGGACTCCTTCTCTGGAGTCCTTGAACAATGTACACCTATGTTCAACACTTTAGTTACTTTTGACTACATCTTCGATGCTCACAATTCTTTGTTCAACACTTTAGTCACTTTGTTTGCTTCGCACCTGACTTATGATTTATCCTTAAGTACTGACTACACATTCAATGCTCACAATTCTTTGTTCGACATTTGAGTATTCTATTGACATGACTAAGTTTAGGGTATGACTCTAGTACCATGTTATACGAGACCTTTTGGAGAAACCCAAAGCAAAACTATGAAAGTTTAGGTTCAAATTAGACAATATCAATACTGTTGTGGGGTGCATCAAATTACAACCTTAAAACAGAACATCTCAAGTATTTTCCTTTTTGATTCAGCTTTATGTACCTGGTTGCACGAGTTTGACTCCTGAGGGAGTGATTCGGGCAGTGGAGACTCTATCACAACATTCTCACAATTTGAATAGCCTAATGATTGGTGGCATTTACAACATAGAGAATGAACACCTTGAAGTCCTCAAGTACCATCTTCTCAAAAACGGATCGCAGCAGCAGCAACAACAACAGCAACAACGTCGTCTGTACCACAAGTACATTGAGGCATGGAAGTTGTTGAGGAACGAATACATGGCAATGATTGATGTAGAAATGTGCCCAAAATGCCAGGAGATAGGGAAAGTTTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGAGCAGAACTCTGGGGCAGAGTGCCGAGGTTGCAGTGGCTGCGTGCCAAGGTGCGAAGAATGTGGGGGATGCGTAGATGGTGATGAAACAGAGGAGGCTGTATGTGCGGGTATCTTGTGCACAAGTTGTTGGCTTCAGCTTCCCAAATGCAACCATTGTAATAGGCCATATTGCACGCGACACCGTCAGAATGTGGTAAGTAGCTCTGCTGCTGGGTTTGTTTGTGAAGTTTGTATTGAAACTTAGCATACTTAAATTGTGATCCAATATGTAGATGAGAGTAAAACAAATTATATGAAAATATGAAATACAAATATGGTATCCTCAACCATGTCAATTCTTTTGGAGTTTCTGTTGAAATAAAATTCATTCCGGTACCAATTTGTAGAAAATAACAATCCGCTTAGATACTAATTTGTAGAAATCAATGCTCGCTCTCAAACTAACTTGTTAAAATAACACTCACAATTTATAGAAATAAATGCTCGCTTTGAAACTAACTTGTTAAAATAACACTCACGAGGTTATGAAGGAGATGTCGAGGAGAGAGTAGAAGACAAAAGAAATTCTGAAAAACCCTTTTCTATTACCGTGTACTTTTAACTCTTACTCTGCTCTTGCTCTCTACCATTCCAATGAGAAACAAATAGTATTTATAATTTTTCTAAAACAAAAAATGGGCATTAGAATCACAGGTTTTCTAACCCATAAAACCACTACCGCTTACAAATAAATGTTTTGACTTTTGACTCAATTTTAAAACTCACATGAACTAAAAATANGTTGTGAAGGAGATGTCGAGAGGGGAGAGACAAGAAGACAAAAGAAATTCTGAAAAACCCTTTTCTATGACCGTGTACTCTTAACTCTTACTCTGCTCTTGCTCTCTACCATTCAAATGAGAAACAAATAGAATTCATAATTTTTCTAAAACAAAAAATGGGCATTAGAATCACACGTTTACTGACCCATAAAACCACTACTGCTTACCAATAAATGTTTTGACTTTTGACTCAATTTTAAAACTCACATTAACTAAAAATAGAAACTACCTCCTTCCTTCTTTTCATTTAATTTTACTTCCAACAAAACTCCCACATAAACTTAAATACTTCTATCATCTGTCGTGCCAATCATCTTCTTGTATTTGTCGAAAAGTACTTTCGGTTTTGCTTCGCACCTGACTTATGATTTATCCTTAAGTACTGACTACACATTCAATGCTCACAATTCTTTGTTCGACATTTGAGTATTCTATTGACATGACTAAGTTTAGGGTATGACTCTAGTACCATGTTATACGAGACCTTTTGGAGAAACCCAAAGCAAAACTATGAAAGTTTAGGTTCAAATTAGACAATATCAATACTGTTGTGGGGTGCATCAAATTACAACCTTAAAACAGAACATCTCAAGTATTTTCCTTTTTGATTCAGCTTTATGTACCTGGTTGCACGAGTTTGACTCCTGAGGGAGTGATTCGGGCAGTGGAGACTCTATCACAACATTCTCACAATTTGAATAGCCTAATGATTGGTGGCATTTACAACATAGAGAATGAACACCTTGAAGTCCTCAAGTACCATCTTCTCAAAAACGGATCGCAGCAGCAGCAACAACAACAGCAACAACGTCGTCTGTACCACAAGTACATTGAGGCATGGAAGTTGTTGAGGAACGAATACATGGCAATGATTGATGTAGAAATGTGCCCAAAATGCCAGGAGATAGGGAAAGTTTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGAGCAGAACTCTGGGGCAGAGTGCCGAGGTTGCAGTGGCTGCGTGCCAAGGTGCGAAGAATGTGGGGGATGCGTAGATGGTGATGAAACAGAGGAGGCTGTATGTGCGGGTATCTTGTGCACAAGTTGTTGGCTTCAGCTTCCCAAATGCAACCATTGTAATAGGCCATATTGCACGCGACACCGTCAGAATGTGGTAAGTAGCTCTGCTGCTGGGTTTGTTTGTGAAGTTTGTATTGAAACTTAG

mRNA sequence

ATGTCTGAGAACAAGAAATTCCCAAATCAGGTGGCCGTCTGCGGCAGTTCATCTCCCGGCGTTCGAATCGCGGCAGGGCCACCGCACGAGGCCTTATTTCTTGTACTGAGTTATCTTCCTCTATTTGAGATTCTTTCCATGGGCGCAGTCTGCGTATCGCTAAGAGACGCAGTGGAACACGATGTGTTGCCGTGGCTTCACCTCGCTGTCGATCGCCCCTTGAGCTCCCGGCTAAACGATTACATTCTGGAGCGAATCGCCCGAAAGGCCGATGGCCGCCTTCGAACCTTGGCTTTGATCAACTGCTTCAAGATTTCAGATTCTGCACTTCACGAAGTCGTTGAGAACAATCCCCTTCTCACCAAGCTTTATGTACCTGGTTGCACGAGTTTGACTCCTGAGGGAGTGATTCGGGCAGTGGAGACTCTATCACAACATTCTCACAATTTGAATAGCCTAATGATTGGTGGCATTTACAACATAGAGAATGAACACCTTGAAGTCCTCAAGTACCATCTTCTCAAAAACGGATCGCAGCAGCAGCAACAACAACAGCAACAACGTCGTCTGTACCACAAGTACATTGAGGCATGGAAGTTGTTGAGGAACGAATACATGGCAATGATTGATGTAGAAATGTGCCCAAAATGCCAGGAGATAGGGAAAGTTTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGAGCAGAACTCTGGGGCAGAGTGCCGAGGTTGCAGTGGCTGCGTGCCAAGGTGCGAAGAATGTGGGGGATGCGTAGATGGTGATGAAACAGAGGAGGCTGTATGTGCGGGTATCTTGTGCACAAGTTGTTGGCTTCAGCTTCCCAAATGCAACCATTGTAATAGGCCATATTGCACGCGACACCGTCAGAATGTGCTTTATGTACCTGGTTGCACGAGTTTGACTCCTGAGGGAGTGATTCGGGCAGTGGAGACTCTATCACAACATTCTCACAATTTGAATAGCCTAATGATTGGTGGCATTTACAACATAGAGAATGAACACCTTGAAGTCCTCAAGTACCATCTTCTCAAAAACGGATCGCAGCAGCAGCAACAACAACAGCAACAACGTCGTCTGTACCACAAGTACATTGAGGCATGGAAGTTGTTGAGGAACGAATACATGGCAATGATTGATGTAGAAATGTGCCCAAAATGCCAGGAGATAGGGAAAGTTTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGAGCAGAACTCTGGGGCAGAGTGCCGAGGTTGCAGTGGCTGCGTGCCAAGGTGCGAAGAATGTGGGGGATGCGTAGATGGTGATGAAACAGAGGAGGCTGTATGTGCGGGTATCTTGTGCACAAGTTGTTGGCTTCAGCTTCCCAAATGCAACCATTGTAATAGGCCATATTGCACGCGACACCGTCAGAATGTGGTAAGTAGCTCTGCTGCTGGGTTTGTTTGTGAAGTTTGTATTGAAACTTAG

Coding sequence (CDS)

ATGTCTGAGAACAAGAAATTCCCAAATCAGGTGGCCGTCTGCGGCAGTTCATCTCCCGGCGTTCGAATCGCGGCAGGGCCACCGCACGAGGCCTTATTTCTTGTACTGAGTTATCTTCCTCTATTTGAGATTCTTTCCATGGGCGCAGTCTGCGTATCGCTAAGAGACGCAGTGGAACACGATGTGTTGCCGTGGCTTCACCTCGCTGTCGATCGCCCCTTGAGCTCCCGGCTAAACGATTACATTCTGGAGCGAATCGCCCGAAAGGCCGATGGCCGCCTTCGAACCTTGGCTTTGATCAACTGCTTCAAGATTTCAGATTCTGCACTTCACGAAGTCGTTGAGAACAATCCCCTTCTCACCAAGCTTTATGTACCTGGTTGCACGAGTTTGACTCCTGAGGGAGTGATTCGGGCAGTGGAGACTCTATCACAACATTCTCACAATTTGAATAGCCTAATGATTGGTGGCATTTACAACATAGAGAATGAACACCTTGAAGTCCTCAAGTACCATCTTCTCAAAAACGGATCGCAGCAGCAGCAACAACAACAGCAACAACGTCGTCTGTACCACAAGTACATTGAGGCATGGAAGTTGTTGAGGAACGAATACATGGCAATGATTGATGTAGAAATGTGCCCAAAATGCCAGGAGATAGGGAAAGTTTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGAGCAGAACTCTGGGGCAGAGTGCCGAGGTTGCAGTGGCTGCGTGCCAAGGTGCGAAGAATGTGGGGGATGCGTAGATGGTGATGAAACAGAGGAGGCTGTATGTGCGGGTATCTTGTGCACAAGTTGTTGGCTTCAGCTTCCCAAATGCAACCATTGTAATAGGCCATATTGCACGCGACACCGTCAGAATGTGCTTTATGTACCTGGTTGCACGAGTTTGACTCCTGAGGGAGTGATTCGGGCAGTGGAGACTCTATCACAACATTCTCACAATTTGAATAGCCTAATGATTGGTGGCATTTACAACATAGAGAATGAACACCTTGAAGTCCTCAAGTACCATCTTCTCAAAAACGGATCGCAGCAGCAGCAACAACAACAGCAACAACGTCGTCTGTACCACAAGTACATTGAGGCATGGAAGTTGTTGAGGAACGAATACATGGCAATGATTGATGTAGAAATGTGCCCAAAATGCCAGGAGATAGGGAAAGTTTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGAGCAGAACTCTGGGGCAGAGTGCCGAGGTTGCAGTGGCTGCGTGCCAAGGTGCGAAGAATGTGGGGGATGCGTAGATGGTGATGAAACAGAGGAGGCTGTATGTGCGGGTATCTTGTGCACAAGTTGTTGGCTTCAGCTTCCCAAATGCAACCATTGTAATAGGCCATATTGCACGCGACACCGTCAGAATGTGGTAAGTAGCTCTGCTGCTGGGTTTGTTTGTGAAGTTTGTATTGAAACTTAG

Protein sequence

MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEHDVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQNVLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQNVVSSSAAGFVCEVCIET

Homology

[Close]

BLAST of Cp4.1LG13g03560 vs. Swiss-Prot
Match: SKI28_ARATH (F-box protein SKIP28 OS=Arabidopsis thaliana GN=SKIP28 PE=1 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.0e-56
Identity = 116/273 (42.49%), Postives = 154/273 (56.41%), Query Frame = 1


Query: 29  HEALFLVLSYL-PLFEILSMGAVCVSLRDAVEHDVLPWLHLAVDRPLSSRLNDYILERIA 88
           HE L +VL YL  LFE+LSM  V  SLRDA+  +   W  L ++ PLSSRL D IL   +
Sbjct: 17  HEVLLIVLPYLHSLFELLSMIRVSRSLRDAIRDETALWTKLVIEPPLSSRLTDDILSEFS 76

Query: 89  RKADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETLSQHS 148
            K+ G+L+TL L  C  +++  L  VV+ NPL+TK+ VPGC+ LTPEG++  VE+LS+++
Sbjct: 77  SKSAGKLKTLILRQCLMVTNKGLRRVVDANPLITKIIVPGCSGLTPEGIMECVESLSKNN 136

Query: 149 HNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNEYMA 208
           H L +L I G+     +HL  L  +L   G+                             
Sbjct: 137 HKLETLHINGVNGFTKQHLSALYTYLSSEGT----------------------------- 196

Query: 209 MIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDETE- 268
            ID+E+CPKC E+  +  CSRE C  KQ      +CRGC  C+PRC EC  C+ G +TE 
Sbjct: 197 -IDLEVCPKCDEVRMIPSCSRESCNQKQR-----KCRGCWLCIPRCAECAVCLVGSDTES 254

Query: 269 -EAVCAG--ILCTSCWLQLPKCNHCNRPYCTRH 297
            EA C    +LC  CWL LPKC  CN+PYCT H
Sbjct: 257 QEAACGNDDVLCLECWLVLPKCRFCNKPYCTNH 254

[Close]

BLAST of Cp4.1LG13g03560 vs. Swiss-Prot
Match: SKI14_ARATH (F-box protein SKIP14 OS=Arabidopsis thaliana GN=SKIP14 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 6.5e-34
Identity = 88/257 (34.24%), Postives = 135/257 (52.53%), Query Frame = 1


Query: 29  HEALFLVLSYLPLFEILSMGAVCVSLRDAVEHDVLPWLHLAVDRPLSSRLNDYILERIAR 88
           H A+   L +L   ++LS+  VC SL   V  D L W H+ + RPL+ ++ +  L  +  
Sbjct: 201 HPAIGFCLYHLRGKDLLSVSMVCKSLHTTVCDDTLLWKHIHICRPLNEKITEEALLHLTE 260

Query: 89  KADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETL-SQHS 148
           +A G ++ L +++C +I+D  L  VV  N  + K+ VPGCT +T +G++  +  L S   
Sbjct: 261 RAQGTMQCLRIVDCCRITDDCLKRVVARNRQVVKIGVPGCTRITIDGILSVLRDLKSAGK 320

Query: 149 HNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNEYMA 208
             +  L + G++ +  +H + L    L N   + +Q  Q+ R YH+  EA     ++   
Sbjct: 321 LQVKHLQLRGLFGVTKDHYDELID--LLNIDNKVKQTIQKPRFYHRG-EACVSCDDD--R 380

Query: 209 MIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDETEE 268
            +D+EMCPKCQ    VYDC  E CK K++     ECR CS C+ RC  CG C+   E EE
Sbjct: 381 ALDIEMCPKCQNFKLVYDCPAEDCKGKKK--GSEECRACSLCIQRCYHCGRCIIDTEYEE 440

Query: 269 AVCAGILCTSCWLQLPK 285
             C  +LC  C    PK
Sbjct: 441 MFCLELLCAVCSKPTPK 450

[Close]

BLAST of Cp4.1LG13g03560 vs. Swiss-Prot
Match: FB327_ARATH (F-box protein At3g27290 OS=Arabidopsis thaliana GN=At3g27290 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.1e-28
Identity = 89/256 (34.77%), Postives = 133/256 (51.95%), Query Frame = 1


Query: 26  GPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEHDVLPWLHLAV-DRPLSSRLNDYILE 85
           G  H+A  LVL YL L EIL++  VC SLRD+V  +   W  + + D  L  R+ D  L 
Sbjct: 125 GEAHDAFELVLPYLELKEILAVEVVCRSLRDSVGKEPFFWTSIDLNDSFLQYRVTDESLL 184

Query: 86  RIARKADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETL- 145
           ++ R+A G +R L L  C  I+D  L +V+ +NP LTKL V GC  L+  G++  +  L 
Sbjct: 185 KLTRRALGGVRCLNLGGCVGITDYGLKQVLASNPHLTKLSVSGCLRLSTAGLVSTLRDLK 244

Query: 146 SQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRN 205
           S +   + SL+ GG      E  + L  +LL  G  +   Q++++R Y      + L   
Sbjct: 245 SSNRLGVKSLITGGALYFTKEQFKEL--NLLLGGDAKVGLQERKKRFYTSCRSEFYL--- 304

Query: 206 EYMAMIDVEMCPKCQEIGKVYDCSRERCKIK-QEQNSGAECRGCSGCVPRCEECGGCVDG 265
           E   + D+E+CP C++   V+DC  + C +K Q   S + CR C  C+ RC ECG C++ 
Sbjct: 305 EDDRVTDLEICPWCEKPSLVFDCPADTCPLKGQYPYSKSSCRACVVCIERCHECGSCLN- 364

Query: 266 DETEEAVCAGILCTSC 279
           D   +  C    C  C
Sbjct: 365 DCENKPFCFAFSCVVC 374

[Close]

BLAST of Cp4.1LG13g03560 vs. TrEMBL
Match: A0A0A0KSU6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G566290 PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 4.1e-120
Identity = 213/301 (70.76%), Postives = 250/301 (83.06%), Query Frame = 1


Query: 1   MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEH 60
           MSEN++ PN  +V           AGPPHEALF V++YLPLFE+LS+ AVCVSLRDAVEH
Sbjct: 30  MSENQEPPNPASVA---------EAGPPHEALFHVMTYLPLFELLSLSAVCVSLRDAVEH 89

Query: 61  DVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLL 120
           DVLPWLH+ VD  LSSRL+DY L RIARKA GRLRTLALINCFKISDS LHEVVENNPLL
Sbjct: 90  DVLPWLHIVVDGRLSSRLSDYTLGRIARKASGRLRTLALINCFKISDSGLHEVVENNPLL 149

Query: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGS-Q 180
           TKLYVPGCTSLTPEGV+RAV+TLSQ SHNL +LMIGGIYNIEN+HLEVL+ HLL+N S  
Sbjct: 150 TKLYVPGCTSLTPEGVVRAVKTLSQDSHNLKNLMIGGIYNIENQHLEVLRSHLLENRSLN 209

Query: 181 QQQQQQQQRRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNS 240
           +QQ+ +Q   LYH++++  +LL ++++ +IDV++CPKC +I  VYDCSRERCKIKQ +N 
Sbjct: 210 KQQEWRQVHHLYHEHVDRPRLLSSDFLPVIDVQICPKCYDIRNVYDCSRERCKIKQGENL 269

Query: 241 GAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQN 300
            A+CRGC  C+PRCEECGGCVD DE EEA+C+ ILC+SCW QLPKCNHCNRPYC RHR N
Sbjct: 270 LADCRGCICCIPRCEECGGCVDDDEIEEAICSDILCSSCWFQLPKCNHCNRPYCKRHRDN 321

[Close]

BLAST of Cp4.1LG13g03560 vs. TrEMBL
Match: A0A061E7T8_THECC (RNI-like superfamily protein, putative OS=Theobroma cacao GN=TCM_011014 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 3.5e-87
Identity = 158/283 (55.83%), Postives = 206/283 (72.79%), Query Frame = 1


Query: 25  AGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEHDVLPWLHLAVDRPLSSRLNDYILE 84
           AG PHEALFLVL+YLPLFE+L+M  VC+SLRDAVE DVLPWL++ V+RPL+ RL+D IL 
Sbjct: 26  AGSPHEALFLVLAYLPLFELLAMSEVCMSLRDAVEKDVLPWLNIIVERPLNLRLSDEILM 85

Query: 85  RIARKADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETLS 144
           ++A KA+GRLRTLALINC  ISD  L  V++ NPL+ +LYVPGCT LTP GVIRAV+ LS
Sbjct: 86  KVASKANGRLRTLALINCAWISDDGLQRVIDKNPLINELYVPGCTGLTPNGVIRAVQKLS 145

Query: 145 QHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNE 204
           +H H+L  L I GIYN++ EHLE L Y++L N ++QQ Q++Q+  LYH + +      +E
Sbjct: 146 EHHHSLKRLQINGIYNMKKEHLETLHYYMLTNQTKQQVQKKQRPLLYHNFRKFQAYRWDE 205

Query: 205 YMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDE 264
           +  +IDVE+CP+C E+  V+DC RE C+  +EQ S  +CR C  C+PRCEECG CV  ++
Sbjct: 206 FGRIIDVEICPRCSEVRMVFDCPREECRRTREQYSLIDCRMCKFCIPRCEECGRCVKPED 265

Query: 265 TEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQNVLYVPGCT 308
            E AVC   LC+ CW+QL KCN CN+P C +H    +   G T
Sbjct: 266 LEVAVCTDTLCSDCWVQLSKCNFCNKPCCGQHADLQISSSGST 308

[Close]

BLAST of Cp4.1LG13g03560 vs. TrEMBL
Match: A0A0D2Q803_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G174200 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 6.2e-84
Identity = 159/272 (58.46%), Postives = 195/272 (71.69%), Query Frame = 1


Query: 25  AGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEHDVLPWLHLAVDRPLSSRLNDYILE 84
           AGPPHEALFLVL+YLPLFE+LSM  VC SLRDAVE DVLPWL++ V+RPLS RL+D IL 
Sbjct: 20  AGPPHEALFLVLAYLPLFELLSMSEVCRSLRDAVEKDVLPWLNVIVERPLSLRLSDEILM 79

Query: 85  RIARKADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETLS 144
           +IA KA+GRLRTL L+ C KI+D  L  V++ NPL++KL++PGCT LTP+GVIRA++ LS
Sbjct: 80  KIASKANGRLRTLVLMYCAKITDDGLQRVIDQNPLISKLHIPGCTGLTPDGVIRALQKLS 139

Query: 145 QHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNE 204
                L SL I GI N++ EHLE L+++L  N    Q QQ +Q  LYH Y         E
Sbjct: 140 DCQDGLKSLWINGIANMKKEHLERLQFYLQTNQKLPQIQQTRQPLLYHNYRRLRAYRWEE 199

Query: 205 YMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDE 264
              +IDVE+CPKC E+  V+DC RE CK K+E NS   CR C  C+PRCEECG CV+  +
Sbjct: 200 LGRVIDVELCPKCNEVRVVFDCPREECKRKRE-NSMTGCRMCMFCIPRCEECGKCVENGD 259

Query: 265 TEEAVCAGILCTSCWLQLPKCNHCNRPYCTRH 297
            EE VCA  LC  CW+QLPKCN CN+P CT+H
Sbjct: 260 LEETVCADTLCLDCWIQLPKCNFCNKPCCTQH 290

[Close]

BLAST of Cp4.1LG13g03560 vs. TrEMBL
Match: B9SP54_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0628400 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.4e-83
Identity = 155/280 (55.36%), Postives = 201/280 (71.79%), Query Frame = 1


Query: 26  GPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEHDVLPWLHLAVDRPLSSRLNDYILER 85
           GPPHEALFLVL+YLP+FE+L+M  VC+SLRDAV  D+LPWL + VDRPLSSRL+D IL +
Sbjct: 43  GPPHEALFLVLAYLPVFELLNMSEVCMSLRDAVNRDLLPWLTIIVDRPLSSRLSDEILMK 102

Query: 86  IARKADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETLSQ 145
           IA KA+ RLRTL L NC KI+D  L +V+E NP + KL++P CT LTPEG+I+AV+ LSQ
Sbjct: 103 IASKANCRLRTLILRNCTKITDDGLEKVIEKNPYINKLHLPACTGLTPEGIIKAVKILSQ 162

Query: 146 HSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNEY 205
           H ++L SL I GIYN++ +HLE L  +L  N S    Q + Q  LYH Y  +      E 
Sbjct: 163 HPNSLKSLQINGIYNLKKQHLETLYSYLQMNPS----QHKPQHILYHIYRISPSSRSTES 222

Query: 206 MAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDET 265
             ++DV++CP+C E+  V+DCSRE C  K+++   A+CRGC+ C+ RCEECGGC+D +E 
Sbjct: 223 GRIVDVDICPQCNEVQIVFDCSRETCMQKRDR-LVADCRGCNFCISRCEECGGCIDAEEQ 282

Query: 266 EEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQNVLYVPG 306
           E+A CA ILC+ CWL L KCN+CN+PYC RH       PG
Sbjct: 283 EDAACADILCSDCWLCLSKCNYCNKPYCKRHTNQQFSSPG 317

[Close]

BLAST of Cp4.1LG13g03560 vs. TrEMBL
Match: I3SN03_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 3.4e-82
Identity = 159/300 (53.00%), Postives = 207/300 (69.00%), Query Frame = 1


Query: 27  PPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEHDVLPWLHLAVDRPLSSRLNDYILERI 86
           PPHEALFLVL+YLP++++L+M  VC +LRDAV +DVLPWL++ V+RPLSSRL+D IL +I
Sbjct: 26  PPHEALFLVLTYLPVYQVLAMSQVCKALRDAVNNDVLPWLNVIVERPLSSRLSDEILVKI 85

Query: 87  ARKADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETLSQH 146
             KA+GRL+TLAL+NC  I+D  L  VVE NPL  KL++P CT +T EGV RAV+TL Q 
Sbjct: 86  TSKANGRLKTLALMNCTHITDKGLQRVVEQNPLTNKLHIPACTGITAEGVTRAVQTLCQR 145

Query: 147 SHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNEYM 206
           S+ L++L I GIYN++ EHL++L  +L KN    ++QQ Q+   YHK        R E  
Sbjct: 146 SNCLSTLRINGIYNLQKEHLDMLAMNLRKN-VPLEEQQMQKPNYYHKRGSFTVFSREENQ 205

Query: 207 AMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDETE 266
            +ID+E CPKC E+  VYDC +  C +K+E+    +CRGC  C+PRCE CGGCV  +E E
Sbjct: 206 RIIDLETCPKCFEVTMVYDCPKVEC-MKREKPQ-VQCRGCKFCIPRCENCGGCVGSEEEE 265

Query: 267 EAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQNVLYVPGCTSLTPEGVIRAVETLSQHSH 326
           EA CA ILC  CWLQLPKCN CN+PYC +H         C+SL P  + R  +   +HSH
Sbjct: 266 EAACADILCLECWLQLPKCNFCNKPYCKQHEN-----WWCSSLDPIFLCRVCD---EHSH 314

[Close]

BLAST of Cp4.1LG13g03560 vs. TAIR10
Match: AT2G01620.1 (AT2G01620.1 RNI-like superfamily protein)

HSP 1 Score: 219.9 bits (559), Expect = 3.4e-57
Identity = 116/273 (42.49%), Postives = 154/273 (56.41%), Query Frame = 1


Query: 29  HEALFLVLSYL-PLFEILSMGAVCVSLRDAVEHDVLPWLHLAVDRPLSSRLNDYILERIA 88
           HE L +VL YL  LFE+LSM  V  SLRDA+  +   W  L ++ PLSSRL D IL   +
Sbjct: 17  HEVLLIVLPYLHSLFELLSMIRVSRSLRDAIRDETALWTKLVIEPPLSSRLTDDILSEFS 76

Query: 89  RKADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETLSQHS 148
            K+ G+L+TL L  C  +++  L  VV+ NPL+TK+ VPGC+ LTPEG++  VE+LS+++
Sbjct: 77  SKSAGKLKTLILRQCLMVTNKGLRRVVDANPLITKIIVPGCSGLTPEGIMECVESLSKNN 136

Query: 149 HNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNEYMA 208
           H L +L I G+     +HL  L  +L   G+                             
Sbjct: 137 HKLETLHINGVNGFTKQHLSALYTYLSSEGT----------------------------- 196

Query: 209 MIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDETE- 268
            ID+E+CPKC E+  +  CSRE C  KQ      +CRGC  C+PRC EC  C+ G +TE 
Sbjct: 197 -IDLEVCPKCDEVRMIPSCSRESCNQKQR-----KCRGCWLCIPRCAECAVCLVGSDTES 254

Query: 269 -EAVCAG--ILCTSCWLQLPKCNHCNRPYCTRH 297
            EA C    +LC  CWL LPKC  CN+PYCT H
Sbjct: 257 QEAACGNDDVLCLECWLVLPKCRFCNKPYCTNH 254

[Close]

BLAST of Cp4.1LG13g03560 vs. TAIR10
Match: AT3G26000.1 (AT3G26000.1 Ribonuclease inhibitor)

HSP 1 Score: 146.7 bits (369), Expect = 3.7e-35
Identity = 88/257 (34.24%), Postives = 135/257 (52.53%), Query Frame = 1


Query: 29  HEALFLVLSYLPLFEILSMGAVCVSLRDAVEHDVLPWLHLAVDRPLSSRLNDYILERIAR 88
           H A+   L +L   ++LS+  VC SL   V  D L W H+ + RPL+ ++ +  L  +  
Sbjct: 201 HPAIGFCLYHLRGKDLLSVSMVCKSLHTTVCDDTLLWKHIHICRPLNEKITEEALLHLTE 260

Query: 89  KADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETL-SQHS 148
           +A G ++ L +++C +I+D  L  VV  N  + K+ VPGCT +T +G++  +  L S   
Sbjct: 261 RAQGTMQCLRIVDCCRITDDCLKRVVARNRQVVKIGVPGCTRITIDGILSVLRDLKSAGK 320

Query: 149 HNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNEYMA 208
             +  L + G++ +  +H + L    L N   + +Q  Q+ R YH+  EA     ++   
Sbjct: 321 LQVKHLQLRGLFGVTKDHYDELID--LLNIDNKVKQTIQKPRFYHRG-EACVSCDDD--R 380

Query: 209 MIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDETEE 268
            +D+EMCPKCQ    VYDC  E CK K++     ECR CS C+ RC  CG C+   E EE
Sbjct: 381 ALDIEMCPKCQNFKLVYDCPAEDCKGKKK--GSEECRACSLCIQRCYHCGRCIIDTEYEE 440

Query: 269 AVCAGILCTSCWLQLPK 285
             C  +LC  C    PK
Sbjct: 441 MFCLELLCAVCSKPTPK 450

[Close]

BLAST of Cp4.1LG13g03560 vs. TAIR10
Match: AT3G27290.1 (AT3G27290.1 RNI-like superfamily protein)

HSP 1 Score: 127.5 bits (319), Expect = 2.3e-29
Identity = 89/256 (34.77%), Postives = 133/256 (51.95%), Query Frame = 1


Query: 26  GPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEHDVLPWLHLAV-DRPLSSRLNDYILE 85
           G  H+A  LVL YL L EIL++  VC SLRD+V  +   W  + + D  L  R+ D  L 
Sbjct: 125 GEAHDAFELVLPYLELKEILAVEVVCRSLRDSVGKEPFFWTSIDLNDSFLQYRVTDESLL 184

Query: 86  RIARKADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETL- 145
           ++ R+A G +R L L  C  I+D  L +V+ +NP LTKL V GC  L+  G++  +  L 
Sbjct: 185 KLTRRALGGVRCLNLGGCVGITDYGLKQVLASNPHLTKLSVSGCLRLSTAGLVSTLRDLK 244

Query: 146 SQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRN 205
           S +   + SL+ GG      E  + L  +LL  G  +   Q++++R Y      + L   
Sbjct: 245 SSNRLGVKSLITGGALYFTKEQFKEL--NLLLGGDAKVGLQERKKRFYTSCRSEFYL--- 304

Query: 206 EYMAMIDVEMCPKCQEIGKVYDCSRERCKIK-QEQNSGAECRGCSGCVPRCEECGGCVDG 265
           E   + D+E+CP C++   V+DC  + C +K Q   S + CR C  C+ RC ECG C++ 
Sbjct: 305 EDDRVTDLEICPWCEKPSLVFDCPADTCPLKGQYPYSKSSCRACVVCIERCHECGSCLN- 364

Query: 266 DETEEAVCAGILCTSC 279
           D   +  C    C  C
Sbjct: 365 DCENKPFCFAFSCVVC 374

[Close]

BLAST of Cp4.1LG13g03560 vs. NCBI nr
Match: gi|659072821|ref|XP_008467112.1| (PREDICTED: F-box protein SKIP28 isoform X1 [Cucumis melo])

HSP 1 Score: 441.8 bits (1135), Expect = 1.6e-120
Identity = 216/301 (71.76%), Postives = 248/301 (82.39%), Query Frame = 1


Query: 1   MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEH 60
           MSEN++ PN  AV           AGPPHEALF V+SYL LFE+LSM AVCVSLRDAVEH
Sbjct: 1   MSENQEPPNPAAVA---------EAGPPHEALFHVVSYLSLFELLSMSAVCVSLRDAVEH 60

Query: 61  DVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLL 120
           DVLPWLH+ VD  LSSRL+DY L RIARKA GRLRTLALI+CFKISDS LHEVVENNPLL
Sbjct: 61  DVLPWLHIVVDGRLSSRLSDYTLGRIARKAGGRLRTLALIDCFKISDSGLHEVVENNPLL 120

Query: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQ 180
           TKLYVPGCTSLTP GV+RAV+T SQHSHNL +LMIGGIYNIEN HLEVL+ HLL+N SQ 
Sbjct: 121 TKLYVPGCTSLTPAGVVRAVKTSSQHSHNLKNLMIGGIYNIENHHLEVLRSHLLENRSQN 180

Query: 181 QQQQ-QQQRRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNS 240
           +QQ+ +Q   LYH++++   LL N+++ +IDV++CPKC +I  VYDCSRERCKIKQ +N 
Sbjct: 181 KQQEWRQVHHLYHEHVDRPNLLSNDFLPLIDVQICPKCYDIRNVYDCSRERCKIKQGENL 240

Query: 241 GAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQN 300
            A+CRGC  C+PRCEECGGCVD DE EEA+C GI+C+SCWLQLPKCNHCNRPYC RHR N
Sbjct: 241 LADCRGCISCMPRCEECGGCVDVDEIEEAICPGIVCSSCWLQLPKCNHCNRPYCKRHRDN 292

[Close]

BLAST of Cp4.1LG13g03560 vs. NCBI nr
Match: gi|659072823|ref|XP_008467113.1| (PREDICTED: F-box protein SKIP28 isoform X2 [Cucumis melo])

HSP 1 Score: 440.3 bits (1131), Expect = 4.5e-120
Identity = 215/300 (71.67%), Postives = 247/300 (82.33%), Query Frame = 1


Query: 1   MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEH 60
           MSEN++ PN  AV           AGPPHEALF V+SYL LFE+LSM AVCVSLRDAVEH
Sbjct: 1   MSENQEPPNPAAVA---------EAGPPHEALFHVVSYLSLFELLSMSAVCVSLRDAVEH 60

Query: 61  DVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLL 120
           DVLPWLH+ VD  LSSRL+DY L RIARKA GRLRTLALI+CFKISDS LHEVVENNPLL
Sbjct: 61  DVLPWLHIVVDGRLSSRLSDYTLGRIARKAGGRLRTLALIDCFKISDSGLHEVVENNPLL 120

Query: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQ 180
           TKLYVPGCTSLTP GV+RAV+T SQHSHNL +LMIGGIYNIEN HLEVL+ HLL+N SQ 
Sbjct: 121 TKLYVPGCTSLTPAGVVRAVKTSSQHSHNLKNLMIGGIYNIENHHLEVLRSHLLENRSQN 180

Query: 181 QQQQ-QQQRRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNS 240
           +QQ+ +Q   LYH++++   LL N+++ +IDV++CPKC +I  VYDCSRERCKIKQ +N 
Sbjct: 181 KQQEWRQVHHLYHEHVDRPNLLSNDFLPLIDVQICPKCYDIRNVYDCSRERCKIKQGENL 240

Query: 241 GAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQN 300
            A+CRGC  C+PRCEECGGCVD DE EEA+C GI+C+SCWLQLPKCNHCNRPYC RHR N
Sbjct: 241 LADCRGCISCMPRCEECGGCVDVDEIEEAICPGIVCSSCWLQLPKCNHCNRPYCKRHRDN 291

[Close]

BLAST of Cp4.1LG13g03560 vs. NCBI nr
Match: gi|449464814|ref|XP_004150124.1| (PREDICTED: F-box protein SKIP28 [Cucumis sativus])

HSP 1 Score: 439.9 bits (1130), Expect = 5.9e-120
Identity = 213/301 (70.76%), Postives = 250/301 (83.06%), Query Frame = 1


Query: 1   MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEH 60
           MSEN++ PN  +V           AGPPHEALF V++YLPLFE+LS+ AVCVSLRDAVEH
Sbjct: 30  MSENQEPPNPASVA---------EAGPPHEALFHVMTYLPLFELLSLSAVCVSLRDAVEH 89

Query: 61  DVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLL 120
           DVLPWLH+ VD  LSSRL+DY L RIARKA GRLRTLALINCFKISDS LHEVVENNPLL
Sbjct: 90  DVLPWLHIVVDGRLSSRLSDYTLGRIARKASGRLRTLALINCFKISDSGLHEVVENNPLL 149

Query: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGS-Q 180
           TKLYVPGCTSLTPEGV+RAV+TLSQ SHNL +LMIGGIYNIEN+HLEVL+ HLL+N S  
Sbjct: 150 TKLYVPGCTSLTPEGVVRAVKTLSQDSHNLKNLMIGGIYNIENQHLEVLRSHLLENRSLN 209

Query: 181 QQQQQQQQRRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNS 240
           +QQ+ +Q   LYH++++  +LL ++++ +IDV++CPKC +I  VYDCSRERCKIKQ +N 
Sbjct: 210 KQQEWRQVHHLYHEHVDRPRLLSSDFLPVIDVQICPKCYDIRNVYDCSRERCKIKQGENL 269

Query: 241 GAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQN 300
            A+CRGC  C+PRCEECGGCVD DE EEA+C+ ILC+SCW QLPKCNHCNRPYC RHR N
Sbjct: 270 LADCRGCICCIPRCEECGGCVDDDEIEEAICSDILCSSCWFQLPKCNHCNRPYCKRHRDN 321

[Close]

BLAST of Cp4.1LG13g03560 vs. NCBI nr
Match: gi|590696706|ref|XP_007045238.1| (RNI-like superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 330.5 bits (846), Expect = 5.1e-87
Identity = 158/283 (55.83%), Postives = 206/283 (72.79%), Query Frame = 1


Query: 25  AGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEHDVLPWLHLAVDRPLSSRLNDYILE 84
           AG PHEALFLVL+YLPLFE+L+M  VC+SLRDAVE DVLPWL++ V+RPL+ RL+D IL 
Sbjct: 26  AGSPHEALFLVLAYLPLFELLAMSEVCMSLRDAVEKDVLPWLNIIVERPLNLRLSDEILM 85

Query: 85  RIARKADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETLS 144
           ++A KA+GRLRTLALINC  ISD  L  V++ NPL+ +LYVPGCT LTP GVIRAV+ LS
Sbjct: 86  KVASKANGRLRTLALINCAWISDDGLQRVIDKNPLINELYVPGCTGLTPNGVIRAVQKLS 145

Query: 145 QHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNE 204
           +H H+L  L I GIYN++ EHLE L Y++L N ++QQ Q++Q+  LYH + +      +E
Sbjct: 146 EHHHSLKRLQINGIYNMKKEHLETLHYYMLTNQTKQQVQKKQRPLLYHNFRKFQAYRWDE 205

Query: 205 YMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDE 264
           +  +IDVE+CP+C E+  V+DC RE C+  +EQ S  +CR C  C+PRCEECG CV  ++
Sbjct: 206 FGRIIDVEICPRCSEVRMVFDCPREECRRTREQYSLIDCRMCKFCIPRCEECGRCVKPED 265

Query: 265 TEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQNVLYVPGCT 308
            E AVC   LC+ CW+QL KCN CN+P C +H    +   G T
Sbjct: 266 LEVAVCTDTLCSDCWVQLSKCNFCNKPCCGQHADLQISSSGST 308

[Close]

BLAST of Cp4.1LG13g03560 vs. NCBI nr
Match: gi|645229390|ref|XP_008221444.1| (PREDICTED: F-box protein SKIP28 [Prunus mume])

HSP 1 Score: 328.2 bits (840), Expect = 2.5e-86
Identity = 166/284 (58.45%), Postives = 204/284 (71.83%), Query Frame = 1


Query: 25  AGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEHDVLPWLHLAVDRPLSSRLNDYILE 84
           AGPPH AL L+ +YLPLFE+L+M  VC SLRDAV  DVL WL +AV  PL+ RL+D IL 
Sbjct: 23  AGPPHMALSLISAYLPLFELLAMSGVCTSLRDAVNKDVLSWLDIAVKSPLNLRLSDEILM 82

Query: 85  RIARKADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETLS 144
           +I  KA+GRLRTLAL++C KI+D  L  VVE NPL+ KLY+PGCT LTPEGVI AV+TLS
Sbjct: 83  KITSKANGRLRTLALMDCAKITDDGLQRVVERNPLINKLYLPGCTGLTPEGVIGAVKTLS 142

Query: 145 QHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNE 204
           +H H L SLMI GIYNI  EHLE L+ +L KN SQQ+Q       L+H++ +      ++
Sbjct: 143 EHHHGLKSLMINGIYNINKEHLETLRPYLEKNLSQQEQSGSWPL-LFHEHRDVPTFRNDK 202

Query: 205 YMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCV-DGD 264
             A IDVE+CPKC E+  V+DC R  CK K  + S ++CRGC+ C+PRC+ECGGCV D +
Sbjct: 203 DYATIDVEVCPKCDEVRMVFDCPRRTCKRKIGR-SMSDCRGCNFCIPRCQECGGCVDDSE 262

Query: 265 ETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQNVLYVPGCT 308
           E EEAVCA ILC  CWLQLPKC+ CN+PYC +H  N    PG T
Sbjct: 263 EVEEAVCADILCLDCWLQLPKCDFCNKPYCKQHAHNGSCPPGST 304

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g03560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKI28_ARATH	6.0e-56	42.49	F-box protein SKIP28 OS=Arabidopsis thaliana GN=SKIP28 PE=1 SV=1	[more]
SKI14_ARATH	6.5e-34	34.24	F-box protein SKIP14 OS=Arabidopsis thaliana GN=SKIP14 PE=1 SV=1	[more]
FB327_ARATH	4.1e-28	34.77	F-box protein At3g27290 OS=Arabidopsis thaliana GN=At3g27290 PE=2 SV=1	[more]

BLAST of Cp4.1LG13g03560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSU6_CUCSA	4.1e-120	70.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G566290 PE=4 SV=1	[more]
A0A061E7T8_THECC	3.5e-87	55.83	RNI-like superfamily protein, putative OS=Theobroma cacao GN=TCM_011014 PE=4 SV=...	[more]
A0A0D2Q803_GOSRA	6.2e-84	58.46	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G174200 PE=4 SV=1	[more]
B9SP54_RICCO	1.4e-83	55.36	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0628400 PE=4 SV=1	[more]
I3SN03_LOTJA	3.4e-82	53.00	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of Cp4.1LG13g03560 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01620.1	3.4e-57	42.49	RNI-like superfamily protein	[more]
AT3G26000.1	3.7e-35	34.24	Ribonuclease inhibitor	[more]
AT3G27290.1	2.3e-29	34.77	RNI-like superfamily protein	[more]

BLAST of Cp4.1LG13g03560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072821\|ref\|XP_008467112.1\|	1.6e-120	71.76	PREDICTED: F-box protein SKIP28 isoform X1 [Cucumis melo]	[more]
gi\|659072823\|ref\|XP_008467113.1\|	4.5e-120	71.67	PREDICTED: F-box protein SKIP28 isoform X2 [Cucumis melo]	[more]
gi\|449464814\|ref\|XP_004150124.1\|	5.9e-120	70.76	PREDICTED: F-box protein SKIP28 [Cucumis sativus]	[more]
gi\|590696706\|ref\|XP_007045238.1\|	5.1e-87	55.83	RNI-like superfamily protein, putative [Theobroma cacao]	[more]
gi\|645229390\|ref\|XP_008221444.1\|	2.5e-86	58.45	PREDICTED: F-box protein SKIP28 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017900	4Fe4S_Fe_S_CS
IPR001810	F-box_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0030286	dynein complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g03560.1	Cp4.1LG13g03560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 28..69 score: 1.3
IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	PROSITE	PS00198	4FE4S_FER_1	coord: 243..254 score: -coord: 421..432 scor
None	No IPR available	unknown	SSF52047	RNI-like	coord: 80..173 score: 5.23E-8coord: 262..354 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG13g03560	Cucsa.280190	Cucumber (Gy14) v1	cgycpeB0735
Cp4.1LG13g03560	CmaCh15G009710	Cucurbita maxima (Rimu)	cmacpeB305
Cp4.1LG13g03560	CmoCh15G010180	Cucurbita moschata (Rifu)	cmocpeB268
Cp4.1LG13g03560	Cla003943	Watermelon (97103) v1	cpewmB188
Cp4.1LG13g03560	Csa5G566290	Cucumber (Chinese Long) v2	cpecuB177
Cp4.1LG13g03560	MELO3C005288	Melon (DHL92) v3.5.1	cpemeB149
Cp4.1LG13g03560	ClCG01G006430	Watermelon (Charleston Gray)	cpewcgB169
Cp4.1LG13g03560	CSPI05G19390	Wild cucumber (PI 183967)	cpecpiB179
Cp4.1LG13g03560	Lsi09G006770	Bottle gourd (USVL1VR-Ls)	cpelsiB135
Cp4.1LG13g03560	MELO3C005288.2	Melon (DHL92) v3.6.1	cpemedB176
Cp4.1LG13g03560	Bhi12G000804	Wax gourd	cpewgoB0227
Cp4.1LG13g03560	CsGy5G018900	Cucumber (Gy14) v2	cgybcpeB600
Cp4.1LG13g03560	Carg23723	Silver-seed gourd	carcpeB1318

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG13g03560	Cucumber (Chinese Long) v3	cpecucB0212
Cp4.1LG13g03560	Cucurbita pepo (Zucchini)	cpecpeB200
Cp4.1LG13g03560	Cucurbita maxima (Rimu)	cmacpeB706
Cp4.1LG13g03560	Cucurbita moschata (Rifu)	cmocpeB658
Cp4.1LG13g03560	Silver-seed gourd	carcpeB0599