Csa5G197120 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGGACTAGAGGATGATCGGAAATTAGATGGAAAACCTTTGAAGCGTGAAAACGTTGGCCCCTCTCATCAAGTGTTAAAGCAAGAAAAGAAACTTAAGGAACAACTTGGATTATATTTATTCTCATTATACACAACCAAACACATAGCGTTTCAACAAAAGTTACAAACGTTCACAAAACACATTAACACAGCTCATTCTTCCATAATATAGTAAACAAACAGAGGCAGAGACAAAGCCCAGACTCAGTACTCAGAATGAACACCATAAGGTTCAACCAGCGATGTCAATGGACTTGATCTCAGGCTTCTTCTCTTCCATTTTAGGCACCATCACAGTCAGAACTCCATTCTCCATGCTGGCTTTCACCTCCTCCACTTTAGCATTCTCAGGCAGCCTGAATCTCCTCATGAACTTCCCACAGCTCCGTTCAATTCTGTGCCATTTGTCATTCTTCTCCTCCTGCTCTTTGCTCCTCTCTCCACTGATTTGCAAAACTCTGCCTTCTTCGACTTCTACTTTGACTTCTTCCTTCTTGATTCCGGGAAGATCAGCCTTGAAGATGTGGGCTTGTGGGGTCTCCTTCCAGTCGATGCGAGTGTTGGCGAAAGCAGAGGTTTCACGAGCAGAGGAGGGAGCGTTGGCCAAGGAGTTTGAAAAGGGGAAGCCTTCGAAGGGATCCCAAATGTCCAATGAAAAGGGGTCGAAGACGTTGCTGCGGCGACCACCGAAAATGCTTGGAACGAGAGCCATGGTTGTTGAATTTGAAGTTGGAAGAAGTAGATTGGATCGAAAGAGAGTGTTTTGCAGAAGTGGGAATTATCTCGTTGGATGATTTCTGGATGACAATCAACCGAGTGGTTTGAGGGATTTAAATAGGAAGCAACAGAAGAAGGGAGTGGATTCGCGGGTTTTCTGGTATGTTCCTTTAGCTGTTTCTTATTCCATTTCTATAAGGTTCTACCACTTTCTTCATGAAGTTTGGACCCAGTCTTCACAATAGTTGAGCCCACCTCATGTATTTTGA ATGTCAATGGACTTGATCTCAGGCTTCTTCTCTTCCATTTTAGGCACCATCACAGTCAGAACTCCATTCTCCATGCTGGCTTTCACCTCCTCCACTTTAGCATTCTCAGGCAGCCTGAATCTCCTCATGAACTTCCCACAGCTCCGTTCAATTCTGTGCCATTTGTCATTCTTCTCCTCCTGCTCTTTGCTCCTCTCTCCACTGATTTGCAAAACTCTGCCTTCTTCGACTTCTACTTTGACTTCTTCCTTCTTGATTCCGGGAAGATCAGCCTTGAAGATGTGGGCTTGTGGGGTCTCCTTCCAGTCGATGCGAGTGTTGGCGAAAGCAGAGGTTTCACGAGCAGAGGAGGGAGCGTTGGCCAAGGAGTTTGAAAAGGGGAAGCCTTCGAAGGGATCCCAAATGTCCAATGAAAAGGGGTCGAAGACGTTGCTGCGGCGACCACCGAAAATGCTTGGAACGAGAGCCATGGTTGTTGAATTTGAAGTTGGAAGAAGTAGATTGGATCGAAAGAGAGTGTTTTGCAGAAGTGGGAATTATCTCGTTGGATGA ATGTCAATGGACTTGATCTCAGGCTTCTTCTCTTCCATTTTAGGCACCATCACAGTCAGAACTCCATTCTCCATGCTGGCTTTCACCTCCTCCACTTTAGCATTCTCAGGCAGCCTGAATCTCCTCATGAACTTCCCACAGCTCCGTTCAATTCTGTGCCATTTGTCATTCTTCTCCTCCTGCTCTTTGCTCCTCTCTCCACTGATTTGCAAAACTCTGCCTTCTTCGACTTCTACTTTGACTTCTTCCTTCTTGATTCCGGGAAGATCAGCCTTGAAGATGTGGGCTTGTGGGGTCTCCTTCCAGTCGATGCGAGTGTTGGCGAAAGCAGAGGTTTCACGAGCAGAGGAGGGAGCGTTGGCCAAGGAGTTTGAAAAGGGGAAGCCTTCGAAGGGATCCCAAATGTCCAATGAAAAGGGGTCGAAGACGTTGCTGCGGCGACCACCGAAAATGCTTGGAACGAGAGCCATGGTTGTTGAATTTGAAGTTGGAAGAAGTAGATTGGATCGAAAGAGAGTGTTTTGCAGAAGTGGGAATTATCTCGTTGGATGA MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSSCSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGALAKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVEFEVGRSRLDRKRVFCRSGNYLVG*
BLAST of Csa5G197120 vs. TrEMBL
Match: A0A0A0KSC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G197120 PE=4 SV=1) HSP 1 Score: 356.7 bits (914), Expect = 1.7e-95 Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1
BLAST of Csa5G197120 vs. TrEMBL
Match: A0A103YMN4_CYNCS (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_009654 PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 9.2e-41 Identity = 97/147 (65.99%), Postives = 105/147 (71.43%), Query Frame = 1
BLAST of Csa5G197120 vs. TrEMBL
Match: I1P9U5_ORYGL (Uncharacterized protein OS=Oryza glaberrima PE=3 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 3.5e-40 Identity = 108/184 (58.70%), Postives = 115/184 (62.50%), Query Frame = 1
BLAST of Csa5G197120 vs. TrEMBL
Match: A0A0D9Z549_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=3 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39 Identity = 106/177 (59.89%), Postives = 112/177 (63.28%), Query Frame = 1
BLAST of Csa5G197120 vs. TrEMBL
Match: A0A0P0UXN9_ORYSJ (Os01g0136050 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os01g0136050 PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 6.6e-39 Identity = 101/153 (66.01%), Postives = 109/153 (71.24%), Query Frame = 1
BLAST of Csa5G197120 vs. NCBI nr
Match: gi|700195444|gb|KGN50621.1| (hypothetical protein Csa_5G197120 [Cucumis sativus]) HSP 1 Score: 356.7 bits (914), Expect = 2.5e-95 Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1
BLAST of Csa5G197120 vs. NCBI nr
Match: gi|976929048|gb|KVI11914.1| (hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus]) HSP 1 Score: 174.9 bits (442), Expect = 1.3e-40 Identity = 97/147 (65.99%), Postives = 105/147 (71.43%), Query Frame = 1
BLAST of Csa5G197120 vs. NCBI nr
Match: gi|937894281|dbj|BAS70261.1| (Os01g0136050, partial [Oryza sativa Japonica Group]) HSP 1 Score: 168.7 bits (426), Expect = 9.5e-39 Identity = 101/153 (66.01%), Postives = 109/153 (71.24%), Query Frame = 1
BLAST of Csa5G197120 vs. NCBI nr
Match: gi|113548134|dbj|BAF11577.1| (Os03g0267100 [Oryza sativa Japonica Group]) HSP 1 Score: 158.3 bits (399), Expect = 1.3e-35 Identity = 94/156 (60.26%), Postives = 97/156 (62.18%), Query Frame = 1
BLAST of Csa5G197120 vs. NCBI nr
Match: gi|223949877|gb|ACN29022.1| (unknown [Zea mays]) HSP 1 Score: 142.5 bits (358), Expect = 7.3e-31 Identity = 87/149 (58.39%), Postives = 96/149 (64.43%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |