Csa5G197120 (gene) Cucumber (Chinese Long) v2

NameCsa5G197120
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 8697794 .. 8698818 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGACTAGAGGATGATCGGAAATTAGATGGAAAACCTTTGAAGCGTGAAAACGTTGGCCCCTCTCATCAAGTGTTAAAGCAAGAAAAGAAACTTAAGGAACAACTTGGATTATATTTATTCTCATTATACACAACCAAACACATAGCGTTTCAACAAAAGTTACAAACGTTCACAAAACACATTAACACAGCTCATTCTTCCATAATATAGTAAACAAACAGAGGCAGAGACAAAGCCCAGACTCAGTACTCAGAATGAACACCATAAGGTTCAACCAGCGATGTCAATGGACTTGATCTCAGGCTTCTTCTCTTCCATTTTAGGCACCATCACAGTCAGAACTCCATTCTCCATGCTGGCTTTCACCTCCTCCACTTTAGCATTCTCAGGCAGCCTGAATCTCCTCATGAACTTCCCACAGCTCCGTTCAATTCTGTGCCATTTGTCATTCTTCTCCTCCTGCTCTTTGCTCCTCTCTCCACTGATTTGCAAAACTCTGCCTTCTTCGACTTCTACTTTGACTTCTTCCTTCTTGATTCCGGGAAGATCAGCCTTGAAGATGTGGGCTTGTGGGGTCTCCTTCCAGTCGATGCGAGTGTTGGCGAAAGCAGAGGTTTCACGAGCAGAGGAGGGAGCGTTGGCCAAGGAGTTTGAAAAGGGGAAGCCTTCGAAGGGATCCCAAATGTCCAATGAAAAGGGGTCGAAGACGTTGCTGCGGCGACCACCGAAAATGCTTGGAACGAGAGCCATGGTTGTTGAATTTGAAGTTGGAAGAAGTAGATTGGATCGAAAGAGAGTGTTTTGCAGAAGTGGGAATTATCTCGTTGGATGATTTCTGGATGACAATCAACCGAGTGGTTTGAGGGATTTAAATAGGAAGCAACAGAAGAAGGGAGTGGATTCGCGGGTTTTCTGGTATGTTCCTTTAGCTGTTTCTTATTCCATTTCTATAAGGTTCTACCACTTTCTTCATGAAGTTTGGACCCAGTCTTCACAATAGTTGAGCCCACCTCATGTATTTTGA

mRNA sequence

ATGTCAATGGACTTGATCTCAGGCTTCTTCTCTTCCATTTTAGGCACCATCACAGTCAGAACTCCATTCTCCATGCTGGCTTTCACCTCCTCCACTTTAGCATTCTCAGGCAGCCTGAATCTCCTCATGAACTTCCCACAGCTCCGTTCAATTCTGTGCCATTTGTCATTCTTCTCCTCCTGCTCTTTGCTCCTCTCTCCACTGATTTGCAAAACTCTGCCTTCTTCGACTTCTACTTTGACTTCTTCCTTCTTGATTCCGGGAAGATCAGCCTTGAAGATGTGGGCTTGTGGGGTCTCCTTCCAGTCGATGCGAGTGTTGGCGAAAGCAGAGGTTTCACGAGCAGAGGAGGGAGCGTTGGCCAAGGAGTTTGAAAAGGGGAAGCCTTCGAAGGGATCCCAAATGTCCAATGAAAAGGGGTCGAAGACGTTGCTGCGGCGACCACCGAAAATGCTTGGAACGAGAGCCATGGTTGTTGAATTTGAAGTTGGAAGAAGTAGATTGGATCGAAAGAGAGTGTTTTGCAGAAGTGGGAATTATCTCGTTGGATGA

Coding sequence (CDS)

ATGTCAATGGACTTGATCTCAGGCTTCTTCTCTTCCATTTTAGGCACCATCACAGTCAGAACTCCATTCTCCATGCTGGCTTTCACCTCCTCCACTTTAGCATTCTCAGGCAGCCTGAATCTCCTCATGAACTTCCCACAGCTCCGTTCAATTCTGTGCCATTTGTCATTCTTCTCCTCCTGCTCTTTGCTCCTCTCTCCACTGATTTGCAAAACTCTGCCTTCTTCGACTTCTACTTTGACTTCTTCCTTCTTGATTCCGGGAAGATCAGCCTTGAAGATGTGGGCTTGTGGGGTCTCCTTCCAGTCGATGCGAGTGTTGGCGAAAGCAGAGGTTTCACGAGCAGAGGAGGGAGCGTTGGCCAAGGAGTTTGAAAAGGGGAAGCCTTCGAAGGGATCCCAAATGTCCAATGAAAAGGGGTCGAAGACGTTGCTGCGGCGACCACCGAAAATGCTTGGAACGAGAGCCATGGTTGTTGAATTTGAAGTTGGAAGAAGTAGATTGGATCGAAAGAGAGTGTTTTGCAGAAGTGGGAATTATCTCGTTGGATGA

Protein sequence

MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSSCSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGALAKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVEFEVGRSRLDRKRVFCRSGNYLVG*
BLAST of Csa5G197120 vs. TrEMBL
Match: A0A0A0KSC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G197120 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 1.7e-95
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1

Query: 1   MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS 60
           MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS
Sbjct: 1   MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS 60

Query: 61  CSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGAL 120
           CSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGAL
Sbjct: 61  CSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGAL 120

Query: 121 AKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVEFEVGRSRLDRKRVFCRSGNY 180
           AKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVEFEVGRSRLDRKRVFCRSGNY
Sbjct: 121 AKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVEFEVGRSRLDRKRVFCRSGNY 180

Query: 181 LVG 184
           LVG
Sbjct: 181 LVG 183

BLAST of Csa5G197120 vs. TrEMBL
Match: A0A103YMN4_CYNCS (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_009654 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 9.2e-41
Identity = 97/147 (65.99%), Postives = 105/147 (71.43%), Query Frame = 1

Query: 7   SGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSSCSLLLS 66
           +GFF+S  GT+ V TPFS+ AFT S  AFSG+LNLL+NFP LRS LCH+SF SS S  LS
Sbjct: 153 TGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLS 212

Query: 67  PLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGALAKEFEK 126
           PLICK L SSTST TSSFLIPGRSALK  A GVSFQS RV  KAEVS  E      E  K
Sbjct: 213 PLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQESD--PDEVGK 272

Query: 127 GKPSKGSQMSNEKGSKTLLRRPPKMLG 154
           GK   GSQ+S   GSK L RRPPK LG
Sbjct: 273 GKSLNGSQISMANGSKMLFRRPPKKLG 297

BLAST of Csa5G197120 vs. TrEMBL
Match: I1P9U5_ORYGL (Uncharacterized protein OS=Oryza glaberrima PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.5e-40
Identity = 108/184 (58.70%), Postives = 115/184 (62.50%), Query Frame = 1

Query: 3   MDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSSCS 62
           MDL SGF  S LGT+TV TPFSM A   S L FSGS NL  N P LRS  CHLS FSSCS
Sbjct: 611 MDLTSGFLGSSLGTVTVSTPFSMDALICSGLVFSGSRNLRRNLPLLRSTRCHLSVFSSCS 670

Query: 63  LLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKA----EVSRAEEG 122
           LL SPLIC+ LPSSTSTLTSSF  PG SAL   A GVSFQSMR  AKA    EV R ++G
Sbjct: 671 LLRSPLICRMLPSSTSTLTSSFFSPGTSALNTCASGVSFQSMRAPAKAAVSEEVPRGKDG 730

Query: 123 ----ALAKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVEFEVGRSRLDRKRVF 179
                L     KGKPSKGSQ S EKGS TLLRR   ++G  A     EV RS      + 
Sbjct: 731 KMLPLLLLPEPKGKPSKGSQRSREKGSNTLLRRIIDIVGIAA---NLEVERSDFSEFLLX 790

BLAST of Csa5G197120 vs. TrEMBL
Match: A0A0D9Z549_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39
Identity = 106/177 (59.89%), Postives = 112/177 (63.28%), Query Frame = 1

Query: 3   MDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSSCS 62
           MDL SGF  S LGT+TV TPFSM A   S L FSGS NL  N P LRS  CHLS FSSCS
Sbjct: 1   MDLTSGFLGSSLGTVTVSTPFSMDALICSGLVFSGSRNLRRNLPLLRSTRCHLSVFSSCS 60

Query: 63  LLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKA----EVSRAEEG 122
           LL SPLIC+ LPSSTSTLTSSF  PG SAL   A GVSFQSMR  AKA    EV R ++G
Sbjct: 61  LLRSPLICRMLPSSTSTLTSSFFSPGTSALNTCASGVSFQSMRAPAKAAVSEEVPRGKDG 120

Query: 123 ----ALAKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVEFEVGRSRLDRK 172
                L     KGKPSKGSQ S EKGS  LLRR   ++G  A     EV RS    K
Sbjct: 121 KMLPLLLLPEPKGKPSKGSQRSREKGSNMLLRRIIDIVGIAA---NLEVERSDFSEK 174

BLAST of Csa5G197120 vs. TrEMBL
Match: A0A0P0UXN9_ORYSJ (Os01g0136050 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os01g0136050 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.6e-39
Identity = 101/153 (66.01%), Postives = 109/153 (71.24%), Query Frame = 1

Query: 1   MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS 60
           +SM   SGF +S LGT+TV TPFSMLAFT STLAFSGSLN  MN P LRS  CHLSF SS
Sbjct: 20  ISMAFTSGFLTSALGTVTVSTPFSMLAFTWSTLAFSGSLNRRMNCPLLRSTRCHLSFLSS 79

Query: 61  CSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGAL 120
            SLL  PLI  TLPSSTST TSSFL PGRSALK    GVSFQS R LAKA VSR+E   +
Sbjct: 80  FSLLRCPLITSTLPSSTSTFTSSFLTPGRSALKTCDSGVSFQSTRALAKAAVSRSE---V 139

Query: 121 AKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLG 154
           A   E+  PSKGSQ S  KGS TLLR    ++G
Sbjct: 140 AGTRERKTPSKGSQKS-AKGSNTLLRLTSDIVG 168

BLAST of Csa5G197120 vs. NCBI nr
Match: gi|700195444|gb|KGN50621.1| (hypothetical protein Csa_5G197120 [Cucumis sativus])

HSP 1 Score: 356.7 bits (914), Expect = 2.5e-95
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1

Query: 1   MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS 60
           MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS
Sbjct: 1   MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS 60

Query: 61  CSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGAL 120
           CSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGAL
Sbjct: 61  CSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGAL 120

Query: 121 AKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVEFEVGRSRLDRKRVFCRSGNY 180
           AKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVEFEVGRSRLDRKRVFCRSGNY
Sbjct: 121 AKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVEFEVGRSRLDRKRVFCRSGNY 180

Query: 181 LVG 184
           LVG
Sbjct: 181 LVG 183

BLAST of Csa5G197120 vs. NCBI nr
Match: gi|976929048|gb|KVI11914.1| (hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 174.9 bits (442), Expect = 1.3e-40
Identity = 97/147 (65.99%), Postives = 105/147 (71.43%), Query Frame = 1

Query: 7   SGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSSCSLLLS 66
           +GFF+S  GT+ V TPFS+ AFT S  AFSG+LNLL+NFP LRS LCH+SF SS S  LS
Sbjct: 153 TGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLS 212

Query: 67  PLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGALAKEFEK 126
           PLICK L SSTST TSSFLIPGRSALK  A GVSFQS RV  KAEVS  E      E  K
Sbjct: 213 PLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQESD--PDEVGK 272

Query: 127 GKPSKGSQMSNEKGSKTLLRRPPKMLG 154
           GK   GSQ+S   GSK L RRPPK LG
Sbjct: 273 GKSLNGSQISMANGSKMLFRRPPKKLG 297

BLAST of Csa5G197120 vs. NCBI nr
Match: gi|937894281|dbj|BAS70261.1| (Os01g0136050, partial [Oryza sativa Japonica Group])

HSP 1 Score: 168.7 bits (426), Expect = 9.5e-39
Identity = 101/153 (66.01%), Postives = 109/153 (71.24%), Query Frame = 1

Query: 1   MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS 60
           +SM   SGF +S LGT+TV TPFSMLAFT STLAFSGSLN  MN P LRS  CHLSF SS
Sbjct: 20  ISMAFTSGFLTSALGTVTVSTPFSMLAFTWSTLAFSGSLNRRMNCPLLRSTRCHLSFLSS 79

Query: 61  CSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGAL 120
            SLL  PLI  TLPSSTST TSSFL PGRSALK    GVSFQS R LAKA VSR+E   +
Sbjct: 80  FSLLRCPLITSTLPSSTSTFTSSFLTPGRSALKTCDSGVSFQSTRALAKAAVSRSE---V 139

Query: 121 AKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLG 154
           A   E+  PSKGSQ S  KGS TLLR    ++G
Sbjct: 140 AGTRERKTPSKGSQKS-AKGSNTLLRLTSDIVG 168

BLAST of Csa5G197120 vs. NCBI nr
Match: gi|113548134|dbj|BAF11577.1| (Os03g0267100 [Oryza sativa Japonica Group])

HSP 1 Score: 158.3 bits (399), Expect = 1.3e-35
Identity = 94/156 (60.26%), Postives = 97/156 (62.18%), Query Frame = 1

Query: 3   MDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSSCS 62
           MDL SGF  S LGT+TV TPFSM A   S L FSG  NL  N P LRS  CHLS FSSCS
Sbjct: 1   MDLTSGFLGSSLGTVTVSTPFSMDALICSGLVFSGRRNLRRNLPLLRSTRCHLSDFSSCS 60

Query: 63  LLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEG---- 122
           LL SPLIC+ LPSSTSTLTSSF  PG SAL     GVSFQSMR  AKA  S    G    
Sbjct: 61  LLRSPLICRMLPSSTSTLTSSFFSPGTSALNTCTSGVSFQSMRAPAKAAASELARGKRLP 120

Query: 123 --ALAKEFEKGKPSKGSQMSNEKGSKTLLRRPPKML 153
              L     KGKPS GSQ S EKGS  L RR   M+
Sbjct: 121 LLLLLPPEPKGKPSTGSQRSREKGSNALPRRISDMV 156

BLAST of Csa5G197120 vs. NCBI nr
Match: gi|223949877|gb|ACN29022.1| (unknown [Zea mays])

HSP 1 Score: 142.5 bits (358), Expect = 7.3e-31
Identity = 87/149 (58.39%), Postives = 96/149 (64.43%), Query Frame = 1

Query: 3   MDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSSCS 62
           M L SGF +S LGT+TV TPFS  A TSS LAFSG      N+P LRS  CHLS  SS S
Sbjct: 1   MLLTSGFLTSALGTVTVSTPFSSAALTSSVLAFSGRRKRRTNWPLLRSTRCHLSPLSSFS 60

Query: 63  LLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRA-----EE 122
           LL  PL+  TLPSSTST TSSF  PGRSAL   A GVSFQSMR LAKA VS A     ++
Sbjct: 61  LLRCPLMSSTLPSSTSTFTSSFFTPGRSALNTCASGVSFQSMRALAKAAVSEAAAADDDD 120

Query: 123 GALAKEFEKGKPSKGSQMSNEKGSKTLLR 147
           G +    E+   SKGS+ S E GS TL R
Sbjct: 121 GTM----ERNTLSKGSKRSTENGSNTLPR 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KSC0_CUCSA1.7e-95100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G197120 PE=4 SV=1[more]
A0A103YMN4_CYNCS9.2e-4165.99Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_0... [more]
I1P9U5_ORYGL3.5e-4058.70Uncharacterized protein OS=Oryza glaberrima PE=3 SV=1[more]
A0A0D9Z549_9ORYZ2.3e-3959.89Uncharacterized protein OS=Oryza glumipatula PE=3 SV=1[more]
A0A0P0UXN9_ORYSJ6.6e-3966.01Os01g0136050 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os01g0136050 ... [more]
Match NameE-valueIdentityDescription
gi|700195444|gb|KGN50621.1|2.5e-95100.00hypothetical protein Csa_5G197120 [Cucumis sativus][more]
gi|976929048|gb|KVI11914.1|1.3e-4065.99hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus][more]
gi|937894281|dbj|BAS70261.1|9.5e-3966.01Os01g0136050, partial [Oryza sativa Japonica Group][more]
gi|113548134|dbj|BAF11577.1|1.3e-3560.26Os03g0267100 [Oryza sativa Japonica Group][more]
gi|223949877|gb|ACN29022.1|7.3e-3158.39unknown [Zea mays][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU087464cucumber EST collection version 3.0transcribed_cluster
CU101995cucumber EST collection version 3.0transcribed_cluster
CU132818cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G197120.1Csa5G197120.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU101995CU101995transcribed_cluster
CU087464CU087464transcribed_cluster
CU132818CU132818transcribed_cluster


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G197120Lsi04G009480Bottle gourd (USVL1VR-Ls)culsiB363
Csa5G197120MELO3C034323.2Melon (DHL92) v3.6.1cumedB350
Csa5G197120CmoCh04G012150Cucurbita moschata (Rifu)cmocuB736
The following gene(s) are paralogous to this gene:

None