CmoCh04G012150 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G012150
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNodulin MtN21/EamA-like transporter family protein
LocationCmo_Chr04 : 6171138 .. 6171668 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATGCTCCTGACTTCTGGCTTCTTCACTTCCATTTTGGGCACCGTCACCGTCAGCACCCCATTCTCCATGTTGGCCTTCACCTCTTCTACTTTCGCATTCTCCGGCAGCCTGAATCTCCTCATGAACTTCCCACTGCTTCTTTCAATTCTATGCCACTTGTCGTTCTTCTCCTCCTGCTCTTTGCTTCTCTCTCCGCTGATCTGCAGAACTCCCCCTTCTTCANNNTGCAGAACTCCCCCTTCTTCAATTTCAACCTTCACTTCCTCCTTTTTGATCCCCGGAAGATCCGCCTTCAACACGTGGGCTTCTGGGGTCTCCTTCCAGTCGATGCGGGTGTTGGCAAAAGCAGAGGAGGAGGGGACGTTGGCCAGAGAGCTTGAAAATGGTAAGCCTTCGAAAGGATCCCAAACGTCTAAGGAGAAGGGATCGAAGACGTTGCTCCGGCGCCCACCAAAAATGCTTGGAATCAACGCCATCGTCGTTGTTGGTGAATTAGATAGTAGAATCGCTGAAAGTGATACTTGA

mRNA sequence

ATGTCAATGCTCCTGACTTCTGGCTTCTTCACTTCCATTTTGGGCACCGTCACCGTCAGCACCCCATTCTCCATGTTGGCCTTCACCTCTTCTACTTTCGCATTCTCCGGCAGCCTGAATCTCCTCATGAACTTCCCACTGCTTCTTTCAATTCTATGCCACTTGTCATCCGCCTTCAACACGTGGGCTTCTGGGGTCTCCTTCCAGTCGATGCGGGTGTTGGCAAAAGCAGAGGAGGAGGGGACGTTGGCCAGAGAGCTTGAAAATGGTAAGCCTTCGAAAGGATCCCAAACGTCTAAGGAGAAGGGATCGAAGACGTTGCTCCGGCGCCCACCAAAAATGCTTGGAATCAACGCCATCGTCGTTGTTGGTGAATTAGATAGTAGAATCGCTGAAAGTGATACTTGA

Coding sequence (CDS)

ATGTCAATGCTCCTGACTTCTGGCTTCTTCACTTCCATTTTGGGCACCGTCACCGTCAGCACCCCATTCTCCATGTTGGCCTTCACCTCTTCTACTTTCGCATTCTCCGGCAGCCTGAATCTCCTCATGAACTTCCCACTGCTTCTTTCAATTCTATGCCACTTGTCATCCGCCTTCAACACGTGGGCTTCTGGGGTCTCCTTCCAGTCGATGCGGGTGTTGGCAAAAGCAGAGGAGGAGGGGACGTTGGCCAGAGAGCTTGAAAATGGTAAGCCTTCGAAAGGATCCCAAACGTCTAAGGAGAAGGGATCGAAGACGTTGCTCCGGCGCCCACCAAAAATGCTTGGAATCAACGCCATCGTCGTTGTTGGTGAATTAGATAGTAGAATCGCTGAAAGTGATACTTGA
BLAST of CmoCh04G012150 vs. TrEMBL
Match: A0A0A0KSC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G197120 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-24
Identity = 88/164 (53.66%), Postives = 98/164 (59.76%), Query Frame = 1

Query: 1   MSMLLTSGFFTSILGTVTVSTPFSMLAFTSS----------------------TFAFSGS 60
           MSM L SGFF+SILGT+TV TPFSMLAFTSS                        +F  S
Sbjct: 1   MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS 60

Query: 61  LNLLMNFPLLL------------SILCHLSSAFNTWASGVSFQSMRVLAKAE----EEGT 120
            +LL++ PL+             S L    SA   WA GVSFQSMRVLAKAE    EEG 
Sbjct: 61  CSLLLS-PLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGA 120

Query: 121 LARELENGKPSKGSQTSKEKGSKTLLRRPPKMLGINAIVVVGEL 127
           LA+E E GKPSKGSQ S EKGSKTLLRRPPKMLG  A+VV  E+
Sbjct: 121 LAKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVEFEV 163

BLAST of CmoCh04G012150 vs. TrEMBL
Match: A0A0D9Z548_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.7e-18
Identity = 74/139 (53.24%), Postives = 81/139 (58.27%), Query Frame = 1

Query: 3   MLLTSGFFTSILGTVTVSTPFSMLAFTSSTFAFSGSLNLLMNFPLLLSILCHL--SSAFN 62
           M LTSGF  S LGTVTVSTPFSM A   S   FSGS NL  N PLL S  CH   +SA N
Sbjct: 1   MDLTSGFLGSSLGTVTVSTPFSMDALICSGLVFSGSRNLRRNLPLLRSTRCHFPGTSALN 60

Query: 63  TWASGVSFQSMRVLAKAEEEGTLARELE------------NGKPSKGSQTSKEKGSKTLL 122
           T ASGVSFQSMR  AKA     + R  +             GKPSKGSQ S+EKGS  LL
Sbjct: 61  TCASGVSFQSMRAPAKAAVSEEVPRGKDGKMLPLLLLPEPKGKPSKGSQRSREKGSNMLL 120

Query: 123 RRPPKMLGINAIVVVGELD 128
           RR   ++GI A + V   D
Sbjct: 121 RRIIDIVGIAANLEVERSD 139

BLAST of CmoCh04G012150 vs. TrEMBL
Match: A0A0E0AGQ8_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.9e-17
Identity = 70/128 (54.69%), Postives = 78/128 (60.94%), Query Frame = 1

Query: 3   MLLTSGFFTSILGTVTVSTPFSMLAFTSSTFAFSGSLNLLMNFPLLLSILCHL--SSAFN 62
           M LTSGF  S LGTVTVSTPFSM A   S  A SG  NL  N PLL S  CH   +SA N
Sbjct: 1   MDLTSGFLASSLGTVTVSTPFSMDALICSGLALSGRRNLRRNLPLLRSTRCHCPGTSALN 60

Query: 63  TWASGVSFQSMRVLAKA--EEEGTLARELE----------NGKPSKGSQTSKEKGSKTLL 117
           T ASGVSFQS+R  AKA   EE    ++ +           GKPSKGSQ S+EKGS TLL
Sbjct: 61  TCASGVSFQSIRAPAKAAVSEEAPRGKDGKMLPLLLPPEPKGKPSKGSQRSREKGSNTLL 120

BLAST of CmoCh04G012150 vs. TrEMBL
Match: T1MGU4_TRIUA (Uncharacterized protein OS=Triticum urartu PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-15
Identity = 76/155 (49.03%), Postives = 82/155 (52.90%), Query Frame = 1

Query: 3   MLLTSGFFTSILGTVTVSTPFSMLAFTSSTFAFSGSLNLLMNFPLLLSILCHLS------ 62
           M LTSGF  S LGTVTVSTPFSM AFT S  AFSGS NL  N PLL S  C +S      
Sbjct: 1   MDLTSGFLASSLGTVTVSTPFSMDAFTCSALAFSGSRNLRRNLPLLRSTRCQVSVFSSCS 60

Query: 63  -------------------SAF--------NTWASGVSFQSMRVLAKA----EEEGT--- 117
                              S+F        NT ASGVSFQSMR  AKA    E  GT   
Sbjct: 61  LFRSPLIWRMLPSSTSTFTSSFFSPGTSALNTCASGVSFQSMRAPAKAAVSEEVRGTRLP 120

BLAST of CmoCh04G012150 vs. TrEMBL
Match: A0A0P0UXN9_ORYSJ (Os01g0136050 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os01g0136050 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.6e-13
Identity = 72/154 (46.75%), Postives = 80/154 (51.95%), Query Frame = 1

Query: 1   MSMLLTSGFFTSILGTVTVSTPFSMLAFTSSTFAFSGSLNLLMNFP-------------- 60
           +SM  TSGF TS LGTVTVSTPFSMLAFT ST AFSGSLN  MN P              
Sbjct: 20  ISMAFTSGFLTSALGTVTVSTPFSMLAFTWSTLAFSGSLNRRMNCPLLRSTRCHLSFLSS 79

Query: 61  -------LLLSILCHLSSAFN------------TWASGVSFQSMRVLAKAE-EEGTLARE 120
                  L+ S L   +S F             T  SGVSFQS R LAKA      +A  
Sbjct: 80  FSLLRCPLITSTLPSSTSTFTSSFLTPGRSALKTCDSGVSFQSTRALAKAAVSRSEVAGT 139

BLAST of CmoCh04G012150 vs. NCBI nr
Match: gi|700195444|gb|KGN50621.1| (hypothetical protein Csa_5G197120 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-24
Identity = 88/164 (53.66%), Postives = 98/164 (59.76%), Query Frame = 1

Query: 1   MSMLLTSGFFTSILGTVTVSTPFSMLAFTSS----------------------TFAFSGS 60
           MSM L SGFF+SILGT+TV TPFSMLAFTSS                        +F  S
Sbjct: 1   MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS 60

Query: 61  LNLLMNFPLLL------------SILCHLSSAFNTWASGVSFQSMRVLAKAE----EEGT 120
            +LL++ PL+             S L    SA   WA GVSFQSMRVLAKAE    EEG 
Sbjct: 61  CSLLLS-PLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGA 120

Query: 121 LARELENGKPSKGSQTSKEKGSKTLLRRPPKMLGINAIVVVGEL 127
           LA+E E GKPSKGSQ S EKGSKTLLRRPPKMLG  A+VV  E+
Sbjct: 121 LAKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVEFEV 163

BLAST of CmoCh04G012150 vs. NCBI nr
Match: gi|937894281|dbj|BAS70261.1| (Os01g0136050, partial [Oryza sativa Japonica Group])

HSP 1 Score: 82.4 bits (202), Expect = 6.6e-13
Identity = 72/154 (46.75%), Postives = 80/154 (51.95%), Query Frame = 1

Query: 1   MSMLLTSGFFTSILGTVTVSTPFSMLAFTSSTFAFSGSLNLLMNFP-------------- 60
           +SM  TSGF TS LGTVTVSTPFSMLAFT ST AFSGSLN  MN P              
Sbjct: 20  ISMAFTSGFLTSALGTVTVSTPFSMLAFTWSTLAFSGSLNRRMNCPLLRSTRCHLSFLSS 79

Query: 61  -------LLLSILCHLSSAFN------------TWASGVSFQSMRVLAKAE-EEGTLARE 120
                  L+ S L   +S F             T  SGVSFQS R LAKA      +A  
Sbjct: 80  FSLLRCPLITSTLPSSTSTFTSSFLTPGRSALKTCDSGVSFQSTRALAKAAVSRSEVAGT 139

BLAST of CmoCh04G012150 vs. NCBI nr
Match: gi|548832992|gb|ERM95761.1| (hypothetical protein AMTR_s00023p00249070 [Amborella trichopoda])

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-11
Identity = 71/156 (45.51%), Postives = 73/156 (46.79%), Query Frame = 1

Query: 3   MLLTSGFFTSILGTVTVSTPFSMLAFTSSTFAFSGSLNLLMNFPLLLSILCHLS------ 62
           M LTSGF  S LG VT+ TPFSM AFT ST AFS SLNLL N P LLS L   S      
Sbjct: 1   MDLTSGFTASTLGIVTMRTPFSMAAFTPSTLAFSWSLNLLRNLPWLLSTLSLFSSISFFR 60

Query: 63  ------------------------SAFNTWASGVSFQSMRVLAKAEEEGTLARELENG-- 121
                                   SA NTWA  VSFQS     K E  G +  E E G  
Sbjct: 61  SPLIYRIFPSFNSTFTSSFLSPGRSASNTWALSVSFQSNLTFKKVESLGLVREEKELGFV 120

BLAST of CmoCh04G012150 vs. NCBI nr
Match: gi|976925993|gb|KVI09872.1| (hypothetical protein Ccrd_011724 [Cynara cardunculus var. scolymus])

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-11
Identity = 62/133 (46.62%), Postives = 69/133 (51.88%), Query Frame = 1

Query: 6   TSGFFTSILGTVTVSTPFSMLAFTSSTFAFSGSLNLLMNFPLLLSILCHLS--------- 65
           TSGFF S  GTVTVSTPFS+ AFTSSTFA SGSLNL +NFPLLLS  CH+S         
Sbjct: 48  TSGFFISTFGTVTVSTPFSIDAFTSSTFALSGSLNLRINFPLLLSTRCHVSPLSSLSLFL 107

Query: 66  ------------------------SAFNTWASGVSFQSMRVLAK---AEEEGTLARE--- 100
                                   SA NT AS VSFQS+   A    +++     RE   
Sbjct: 108 SPLIWSTRSSSISTFTSSFFSPGTSALNTCASAVSFQSILAFANNAVSDDRTRSERERRL 167

BLAST of CmoCh04G012150 vs. NCBI nr
Match: gi|976929048|gb|KVI11914.1| (hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 73.9 bits (180), Expect = 2.3e-10
Identity = 61/147 (41.50%), Postives = 77/147 (52.38%), Query Frame = 1

Query: 6   TSGFFTSILGTVTVSTPFSMLAFTSSTFAFSGSLNLLMNFPLLLSILCHLS--SAFNTWA 65
           T+GFFTS  GTV VSTPFS+ AFT S FAFSG+LNLL+NFPLL S LCH+S  S+F+T+ 
Sbjct: 152 TTGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFL 211

Query: 66  SGV----------SFQSMRVLAKAEEEGTLA------------------RELENGKPSKG 118
           S +          +F S  ++       T A                  +E +  +  KG
Sbjct: 212 SPLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQESDPDEVGKG 271

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KSC0_CUCSA1.2e-2453.66Uncharacterized protein OS=Cucumis sativus GN=Csa_5G197120 PE=4 SV=1[more]
A0A0D9Z548_9ORYZ4.7e-1853.24Uncharacterized protein OS=Oryza glumipatula PE=3 SV=1[more]
A0A0E0AGQ8_9ORYZ8.9e-1754.69Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1[more]
T1MGU4_TRIUA1.7e-1549.03Uncharacterized protein OS=Triticum urartu PE=4 SV=1[more]
A0A0P0UXN9_ORYSJ4.6e-1346.75Os01g0136050 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os01g0136050 ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700195444|gb|KGN50621.1|1.7e-2453.66hypothetical protein Csa_5G197120 [Cucumis sativus][more]
gi|937894281|dbj|BAS70261.1|6.6e-1346.75Os01g0136050, partial [Oryza sativa Japonica Group][more]
gi|548832992|gb|ERM95761.1|1.2e-1145.51hypothetical protein AMTR_s00023p00249070 [Amborella trichopoda][more]
gi|976925993|gb|KVI09872.1|1.6e-1146.62hypothetical protein Ccrd_011724 [Cynara cardunculus var. scolymus][more]
gi|976929048|gb|KVI11914.1|2.3e-1041.50hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G012150.1CmoCh04G012150.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G012150Csa5G197120Cucumber (Chinese Long) v2cmocuB736
CmoCh04G012150Lsi04G009480Bottle gourd (USVL1VR-Ls)cmolsiB669
CmoCh04G012150Bhi07G000561Wax gourdcmowgoB0888
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G012150Melon (DHL92) v3.6.1cmomedB736
CmoCh04G012150Melon (DHL92) v3.6.1cmomedB764
CmoCh04G012150Melon (DHL92) v3.6.1cmomedB799
CmoCh04G012150Silver-seed gourdcarcmoB0124
CmoCh04G012150Silver-seed gourdcarcmoB0371
CmoCh04G012150Silver-seed gourdcarcmoB0923
CmoCh04G012150Cucumber (Chinese Long) v3cmocucB0872
CmoCh04G012150Cucumber (Chinese Long) v3cmocucB0903
CmoCh04G012150Watermelon (97103) v2cmowmbB700
CmoCh04G012150Watermelon (97103) v2cmowmbB725
CmoCh04G012150Watermelon (97103) v2cmowmbB754
CmoCh04G012150Wax gourdcmowgoB0860
CmoCh04G012150Cucurbita moschata (Rifu)cmocmoB266
CmoCh04G012150Cucurbita moschata (Rifu)cmocmoB368
CmoCh04G012150Cucurbita moschata (Rifu)cmocmoB450
CmoCh04G012150Cucurbita moschata (Rifu)cmocmoB464
CmoCh04G012150Cucurbita moschata (Rifu)cmocmoB466
CmoCh04G012150Cucumber (Gy14) v1cgycmoB0372
CmoCh04G012150Cucumber (Gy14) v1cgycmoB0475
CmoCh04G012150Cucurbita maxima (Rimu)cmacmoB313
CmoCh04G012150Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G012150Cucurbita maxima (Rimu)cmacmoB730
CmoCh04G012150Cucurbita maxima (Rimu)cmacmoB735
CmoCh04G012150Wild cucumber (PI 183967)cmocpiB746
CmoCh04G012150Wild cucumber (PI 183967)cmocpiB773
CmoCh04G012150Cucumber (Chinese Long) v2cmocuB764
CmoCh04G012150Melon (DHL92) v3.5.1cmomeB675
CmoCh04G012150Melon (DHL92) v3.5.1cmomeB678
CmoCh04G012150Watermelon (Charleston Gray)cmowcgB625
CmoCh04G012150Watermelon (Charleston Gray)cmowcgB675
CmoCh04G012150Watermelon (97103) v1cmowmB668
CmoCh04G012150Watermelon (97103) v1cmowmB672
CmoCh04G012150Watermelon (97103) v1cmowmB684
CmoCh04G012150Watermelon (97103) v1cmowmB734
CmoCh04G012150Cucurbita pepo (Zucchini)cmocpeB660
CmoCh04G012150Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G012150Cucurbita pepo (Zucchini)cmocpeB675
CmoCh04G012150Cucurbita pepo (Zucchini)cmocpeB711
CmoCh04G012150Bottle gourd (USVL1VR-Ls)cmolsiB631
CmoCh04G012150Bottle gourd (USVL1VR-Ls)cmolsiB648
CmoCh04G012150Cucumber (Gy14) v2cgybcmoB387
CmoCh04G012150Cucumber (Gy14) v2cgybcmoB530
CmoCh04G012150Cucumber (Gy14) v2cgybcmoB651
CmoCh04G012150Cucumber (Gy14) v2cgybcmoB820