Csa5G168830 (gene) Cucumber (Chinese Long) v2

NameCsa5G168830
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionSeed specific protein Bn15D1B
LocationChr5 : 6649202 .. 6650725 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAATAAGAGAAGAGAAAAGGCATATTTTCATTTTGTGTGTGTTTCTCTTTCTATTCCCCCAACCATTGGCATTGGCTTGGCATCAAAACTAATATTTGTAGCTAAAGTACTTAACTTGTGTGTGTTTGATTTGCATGGCCTGCAGTTCGAAGATTATCGTTGCTGCTGCTGCTGCTAGTCCACGACTCTCATTATTACTTCCTCACACTTATCTCTTTCCCTTCCCTAATTTTGGCTTCCGGTACGTTTTTCTTTAATCCTCTTTGGTATTTCATGTGATGTTTTTGTTTAGGGTTGATTCTCTTCTTTTACCTTTTGAGTCATACTATAGAGATTTGATTTTATGATGTTTCTGCCTTCAAACTTCGCTCCAAAACTTTTACTGTTTGTCGAGGTGAAAAAGTACTAGAGAGAGATCTTTGTTGATGATTTTTATGCGTGAATCGAAGTCAGTTAACATATTAACACCGATGCATTTGATGTTGTGTTGATTGAATTGTTCACGCACGCTACGTTGACGAAACTTTGTTTATGTTGACACAATAGTGACTGTGTAAGCCCGTTGATGATTTCTACTCACATAAGATACCTAAAACAAAAAGAACTTTTTGTTCGTGTGTGGACAAAAGTATCATTTCCACATATGCACGATATATTGATACAAAAAAGATGTTTATAGAAGTCCATTAATCCTCTCTCAAGAGCTATGTTAAGTCTTGGTTGTGCCTTGTTTAATTTATTCAAATATTGAGATTTTGTTGTTTTTTAAATGTTTATTGAAAATTAAAACGTACATGTGGAAGTATATATATCACGAAATTTTTTTTTTTTTTAAAAAAGACATAATCTAATAAGTAACCACGATAATTAGAACTAGATCATAAATATATAACCGAAAAACAACTATCAATCCAATAATTAGTATTAAAATCTTTCATCTAAAATTAAAATTAAGACACTATCATATACTCAATCTTTTTCTATCGTCCTATTAACACAAACAATGAATTTTTCACACTAGAAACGTAAGAACACAAAAAAAATTTTAAAAAATAGAGTGAGATTCACTAATGTTAATATGACATCCATTACTACTCACGAAAATAAATCTATAGTATGATATGGTATGATATGATATGATATGATATCCCGATGCAACCAACCCGAGTTTATTAGTTGTTGGTTTTTTAGGTCAAGTCATTGGTCAGCGTACGAGAAGAACCAAGAGGACCAAATATGGCCTACAATGGTACCCAATCACCTGATCTCTCGTGATCTATCCGAAGATTATTGGGTTCCCCATCCTGAAACCGGAGTTTTTGGGCCTCCAAAAGCCCACCACAATTCTTCAACTGTTCCCAACGACACGTCGGCTGGTGGTAACGAGGGTTCCGTTCTAAACCTCAAGGCTTGGTTCCGACATAACGGCCTCGAAGACCTCGAGAAACCACACACTCTCTAATTTGGACCCTTGAGATCATATGATAAGAAGATAATAAATAGTATTTTGTCACACATTAATA

mRNA sequence

ATGGCCTGCAGTTCGAAGATTATCGTTGCTGCTGCTGCTGCTAGTCCACGACTCTCATTATTACTTCCTCACACTTATCTCTTTCCCTTCCCTAATTTTGGCTTCCGGTCAAGTCATTGGTCAGCGTACGAGAAGAACCAAGAGGACCAAATATGGCCTACAATGGTACCCAATCACCTGATCTCTCGTGATCTATCCGAAGATTATTGGGTTCCCCATCCTGAAACCGGAGTTTTTGGGCCTCCAAAAGCCCACCACAATTCTTCAACTGTTCCCAACGACACGTCGGCTGGTGGTAACGAGGGTTCCGTTCTAAACCTCAAGGCTTGGTTCCGACATAACGGCCTCGAAGACCTCGAGAAACCACACACTCTCTAA

Coding sequence (CDS)

ATGGCCTGCAGTTCGAAGATTATCGTTGCTGCTGCTGCTGCTAGTCCACGACTCTCATTATTACTTCCTCACACTTATCTCTTTCCCTTCCCTAATTTTGGCTTCCGGTCAAGTCATTGGTCAGCGTACGAGAAGAACCAAGAGGACCAAATATGGCCTACAATGGTACCCAATCACCTGATCTCTCGTGATCTATCCGAAGATTATTGGGTTCCCCATCCTGAAACCGGAGTTTTTGGGCCTCCAAAAGCCCACCACAATTCTTCAACTGTTCCCAACGACACGTCGGCTGGTGGTAACGAGGGTTCCGTTCTAAACCTCAAGGCTTGGTTCCGACATAACGGCCTCGAAGACCTCGAGAAACCACACACTCTCTAA

Protein sequence

MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFRSSHWSAYEKNQEDQIWPTMVPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNGLEDLEKPHTL*
BLAST of Csa5G168830 vs. TrEMBL
Match: A0A0A0KRJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168830 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.9e-69
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1

Query: 1   MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFRSSHWSAYEKNQEDQIWPTMVPNHL 60
           MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFRSSHWSAYEKNQEDQIWPTMVPNHL
Sbjct: 1   MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFRSSHWSAYEKNQEDQIWPTMVPNHL 60

Query: 61  ISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNGLEDLE 120
           ISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNGLEDLE
Sbjct: 61  ISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNGLEDLE 120

Query: 121 KPHTL 126
           KPHTL
Sbjct: 121 KPHTL 125

BLAST of Csa5G168830 vs. TrEMBL
Match: F4KFM8_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At5g17165 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.4e-16
Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 1

Query: 33  FGFRSSHWSAYEKNQEDQIWPTMVPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVP 92
           F  R+ H SAY+KN E+++ P+ VP+ +I  D S+ YW PHP+TGVFGP     +SST  
Sbjct: 29  FTSRNDHTSAYDKNVEEELQPSQVPDEMIKPD-SDKYWSPHPQTGVFGPS----SSSTNA 88

Query: 93  NDTSAGGNEGSVLNLKAWFRHNGLEDLEKPH 124
            D   GG E SV+  KAWFR   LEDL+K H
Sbjct: 89  KDEFRGGQEDSVMEEKAWFRPTSLEDLDKTH 114

BLAST of Csa5G168830 vs. TrEMBL
Match: D7LWX7_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_909708 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-15
Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 1

Query: 33  FGFRSSHWSAYEKNQEDQIWPTMVPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVP 92
           F  R++H S Y+KN E+++  + VP+ LI  D S+ YW PHP+TGVFGP     +SST  
Sbjct: 33  FKSRNNHTSGYDKNVEEELQSSKVPDELIKPD-SDKYWSPHPQTGVFGPS----SSSTDT 92

Query: 93  NDTSAGGNEGSVLNLKAWFRHNGLEDLEKPH 124
           ND   GG E SV+  KAWFR   LEDL+K H
Sbjct: 93  NDDFRGGQEDSVMEEKAWFRPTSLEDLDKTH 118

BLAST of Csa5G168830 vs. TrEMBL
Match: A9P9U6_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-15
Identity = 44/91 (48.35%), Postives = 55/91 (60.44%), Query Frame = 1

Query: 36  RSSHWSAYEKNQEDQIWPTMVPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDT 95
           R +H S Y+KN +D++ P +VP+ +I    S+ YW PHP TGVFGP    H S    +  
Sbjct: 37  RGAHTSVYDKNLDDELQPNVVPDDVIKTQ-SDKYWAPHPRTGVFGPATEQHLSEISGDSA 96

Query: 96  SAG-GNEGSVLNLKAWFRHNGLEDLEKPHTL 126
           S G G +  VL  KAWFR   LEDLEKPH L
Sbjct: 97  SVGDGGQDPVLEEKAWFRPTSLEDLEKPHRL 126

BLAST of Csa5G168830 vs. TrEMBL
Match: U5FUI0_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0013s07960g PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.5e-15
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 1

Query: 36  RSSHWSAYEKNQEDQIWPTMVPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDT 95
           R +H S Y+KN +D++ P +VP+ +I +  S+ YW PHP TGVFGP    H S    +  
Sbjct: 97  RGAHTSVYDKNLDDELRPNVVPDDVI-KPQSDKYWAPHPRTGVFGPATEQHLSEISGDSA 156

Query: 96  SAG-GNEGSVLNLKAWFRHNGLEDLEKPHTL 126
           S G G +  VL  KAWFR   LEDLEKPH L
Sbjct: 157 SVGNGGQDPVLEEKAWFRPTSLEDLEKPHRL 186

BLAST of Csa5G168830 vs. TAIR10
Match: AT5G17165.1 (AT5G17165.1 unknown protein)

HSP 1 Score: 92.0 bits (227), Expect = 2.7e-19
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 1

Query: 33  FGFRSSHWSAYEKNQEDQIWPTMVPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVP 92
           F  R+ H SAY+KN E+++ P+ VP+ +I  D S+ YW PHP+TGVFGP     +SST  
Sbjct: 29  FTSRNDHTSAYDKNVEEELQPSQVPDEMIKPD-SDKYWSPHPQTGVFGPS----SSSTNA 88

Query: 93  NDTSAGGNEGSVLNLKAWFRHNGLEDLEKPH 124
            D   GG E SV+  KAWFR   LEDL+K H
Sbjct: 89  KDEFRGGQEDSVMEEKAWFRPTSLEDLDKTH 114

BLAST of Csa5G168830 vs. TAIR10
Match: AT3G03150.1 (AT3G03150.1 unknown protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-14
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1

Query: 36  RSSHWSAYEKNQEDQIWPTMVPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDT 95
           RS H SAY+KN ED++  + VP+ +I  D S+ YW PHP+TGVFGP    H++      T
Sbjct: 38  RSGHSSAYDKNVEDELHASAVPDEVIKPD-SDKYWSPHPKTGVFGPSTTEHSA------T 97

Query: 96  SAGGNEG-SVLNLKAWFRHNGLEDLEKPH 124
           + G ++  +VL   AWFR   LED +K H
Sbjct: 98  AEGAHQDTAVLEETAWFRPTSLEDSDKTH 119

BLAST of Csa5G168830 vs. NCBI nr
Match: gi|449451834|ref|XP_004143665.1| (PREDICTED: uncharacterized protein LOC101218227 [Cucumis sativus])

HSP 1 Score: 269.6 bits (688), Expect = 2.7e-69
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1

Query: 1   MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFRSSHWSAYEKNQEDQIWPTMVPNHL 60
           MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFRSSHWSAYEKNQEDQIWPTMVPNHL
Sbjct: 1   MACSSKIIVAAAAASPRLSLLLPHTYLFPFPNFGFRSSHWSAYEKNQEDQIWPTMVPNHL 60

Query: 61  ISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNGLEDLE 120
           ISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNGLEDLE
Sbjct: 61  ISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNGLEDLE 120

Query: 121 KPHTL 126
           KPHTL
Sbjct: 121 KPHTL 125

BLAST of Csa5G168830 vs. NCBI nr
Match: gi|659073212|ref|XP_008467312.1| (PREDICTED: uncharacterized protein LOC103504694 isoform X2 [Cucumis melo])

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-52
Identity = 101/125 (80.80%), Postives = 113/125 (90.40%), Query Frame = 1

Query: 4   SSKIIVAA--AAASPRLSLLLPHT-YLFPFPNFGFRSSHWSAYEKNQEDQIWPTMVPNHL 63
           SSKIIV A   AA+PRLSLL+ H+ +LFPF N GFR+SHWSAYEKNQED IWPTMVPN +
Sbjct: 16  SSKIIVVAFTTAAAPRLSLLVSHSPHLFPFANSGFRASHWSAYEKNQEDPIWPTMVPNDV 75

Query: 64  ISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNGLEDLE 123
           I  +LS++YWVPHP+TGVFGPPKAHHNSST+PNDTSAGGNEGSVLNLKAWFRHNGLEDLE
Sbjct: 76  IHHNLSDNYWVPHPQTGVFGPPKAHHNSSTLPNDTSAGGNEGSVLNLKAWFRHNGLEDLE 135

Query: 124 KPHTL 126
           KPH+L
Sbjct: 136 KPHSL 140

BLAST of Csa5G168830 vs. NCBI nr
Match: gi|659073210|ref|XP_008467311.1| (PREDICTED: uncharacterized protein LOC103504694 isoform X1 [Cucumis melo])

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-52
Identity = 101/125 (80.80%), Postives = 113/125 (90.40%), Query Frame = 1

Query: 4   SSKIIVAA--AAASPRLSLLLPHT-YLFPFPNFGFRSSHWSAYEKNQEDQIWPTMVPNHL 63
           SSKIIV A   AA+PRLSLL+ H+ +LFPF N GFR+SHWSAYEKNQED IWPTMVPN +
Sbjct: 26  SSKIIVVAFTTAAAPRLSLLVSHSPHLFPFANSGFRASHWSAYEKNQEDPIWPTMVPNDV 85

Query: 64  ISRDLSEDYWVPHPETGVFGPPKAHHNSSTVPNDTSAGGNEGSVLNLKAWFRHNGLEDLE 123
           I  +LS++YWVPHP+TGVFGPPKAHHNSST+PNDTSAGGNEGSVLNLKAWFRHNGLEDLE
Sbjct: 86  IHHNLSDNYWVPHPQTGVFGPPKAHHNSSTLPNDTSAGGNEGSVLNLKAWFRHNGLEDLE 145

Query: 124 KPHTL 126
           KPH+L
Sbjct: 146 KPHSL 150

BLAST of Csa5G168830 vs. NCBI nr
Match: gi|145334503|ref|NP_001078597.1| (uncharacterized protein [Arabidopsis thaliana])

HSP 1 Score: 92.0 bits (227), Expect = 7.7e-16
Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 1

Query: 33  FGFRSSHWSAYEKNQEDQIWPTMVPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSSTVP 92
           F  R+ H SAY+KN E+++ P+ VP+ +I  D S+ YW PHP+TGVFGP     +SST  
Sbjct: 29  FTSRNDHTSAYDKNVEEELQPSQVPDEMIKPD-SDKYWSPHPQTGVFGPS----SSSTNA 88

Query: 93  NDTSAGGNEGSVLNLKAWFRHNGLEDLEKPH 124
            D   GG E SV+  KAWFR   LEDL+K H
Sbjct: 89  KDEFRGGQEDSVMEEKAWFRPTSLEDLDKTH 114

BLAST of Csa5G168830 vs. NCBI nr
Match: gi|1009123785|ref|XP_015878723.1| (PREDICTED: uncharacterized protein LOC107414996 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 92.0 bits (227), Expect = 7.7e-16
Identity = 48/98 (48.98%), Postives = 63/98 (64.29%), Query Frame = 1

Query: 31  PNFGFRSSHWSAYEKNQEDQIWPTMVPNHLISRDLSEDYWVPHPETGVFGPPKAHHNSST 90
           P    R+ H SAY+KN ++QI P++VP+ LI    S+ YW PHP+TGVFGP  A  ++S 
Sbjct: 35  PALSIRAVHNSAYDKNPDEQIRPSVVPDELIQPQ-SDKYWAPHPKTGVFGP--ATESTSA 94

Query: 91  VPND-----TSAGGNEGSVLNLKAWFRHNGLEDLEKPH 124
              +     +S+ G EGSVL  KAWFR   +EDLEKPH
Sbjct: 95  AGGERGLHASSSDGGEGSVLEQKAWFRPTSIEDLEKPH 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KRJ5_CUCSA1.9e-69100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168830 PE=4 SV=1[more]
F4KFM8_ARATH5.4e-1650.55Uncharacterized protein OS=Arabidopsis thaliana GN=At5g17165 PE=4 SV=1[more]
D7LWX7_ARALL1.6e-1550.55Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
A9P9U6_POPTR2.7e-1548.35Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
U5FUI0_POPTR3.5e-1548.35Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0013s07960g P... [more]
Match NameE-valueIdentityDescription
AT5G17165.12.7e-1950.55 unknown protein[more]
AT3G03150.11.2e-1444.94 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449451834|ref|XP_004143665.1|2.7e-69100.00PREDICTED: uncharacterized protein LOC101218227 [Cucumis sativus][more]
gi|659073212|ref|XP_008467312.1|1.4e-5280.80PREDICTED: uncharacterized protein LOC103504694 isoform X2 [Cucumis melo][more]
gi|659073210|ref|XP_008467311.1|1.4e-5280.80PREDICTED: uncharacterized protein LOC103504694 isoform X1 [Cucumis melo][more]
gi|145334503|ref|NP_001078597.1|7.7e-1650.55uncharacterized protein [Arabidopsis thaliana][more]
gi|1009123785|ref|XP_015878723.1|7.7e-1648.98PREDICTED: uncharacterized protein LOC107414996 isoform X2 [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006950 response to stress
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU084478cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G168830.1Csa5G168830.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU084478CU084478transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35122FAMILY NOT NAMEDcoord: 36..125
score: 3.9
NoneNo IPR availablePANTHERPTHR35122:SF2SUBFAMILY NOT NAMEDcoord: 36..125
score: 3.9

The following gene(s) are paralogous to this gene:

None