Cucsa.093870 (gene) Cucumber (Gy14) v1

NameCucsa.093870
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionSeed specific protein Bn15D1B
Locationscaffold00919 : 139522 .. 140574 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAGCAGTATGTGGTGGGACTGTTCTTATCATTTATGTTAGTTGTTATTGCAAGCCAGTCATATAATCGATTACTTTTTATCGATAGCGTATCTGATTCTCAAGCATGCTTTTGGGTTCTTCTTTCTATTCTTCTTTAAGTTGACCTTTTACCTACATCATATCTAATGATCAAATCATCCATACACTCAATTTGAACAAGAGTAATTAATTATTGTAATATATATATATATATATATATATATATATATATatGTGTaTCTATtATTTATTaCttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaGTTAATTAaTtATTaTaATATATATATATATATATATATATATATATATATTCGtGGATTCCATATTTTAtACTTCGTTCGTAGGAATTTTTAAATTtAATTTTtATTtCATCCATGAATTTCAAGATCTTATATACTTCACCATTAAATTAGATCGATATGATGTTAGATTTTCCTTATTTACAATTTTCCGATAGTGTTCTTAAATCTGAATTGTTCTCTTGCAATCGACCACTCTTTCTTCAATTTATATACTAAGTAAATCTTTGTGTTGATTCTTCACTGTTTATGTTTTTCAATTGATCTTTCTATGCTTAATGACTTTACACTTTTAATGTTGAAATAGGAGAGCAGCTCACACCTCAGTGTATGACAAGAACCCAGAGGAGCAAGTTCGACCATCCATAGTCCCAGATGATGTGATTCAACCTCAAGCAGCAGCTGACAACTACTGGGCTCCTCATCCACAAACCGGAGTTTTTGGACCGGCCTCAGACAATCCTGCTGCAGTGGCGGCGGCAGCCAACCGTGCAGCCGATGGTGGCAACTACTCTGCTGTGGAGGAGGAAAAAGCTTGGTTCCGACCAACAAGTCTGGAGGATTCGGAGAAGCCCCACGGGTTATAG

mRNA sequence

ATGAAAAAGCAGTATGTGGTGGGACTGTTCTTATCATTTATGTTAGTTGTTATTGCAAGCCAGAGAGCAGCTCACACCTCAGTGTATGACAAGAACCCAGAGGAGCAAGTTCGACCATCCATAGTCCCAGATGATGTGATTCAACCTCAAGCAGCAGCTGACAACTACTGGGCTCCTCATCCACAAACCGGAGTTTTTGGACCGGCCTCAGACAATCCTGCTGCAGTGGCGGCGGCAGCCAACCGTGCAGCCGATGGTGGCAACTACTCTGCTGTGGAGGAGGAAAAAGCTTGGTTCCGACCAACAAGTCTGGAGGATTCGGAGAAGCCCCACGGGTTATAG

Coding sequence (CDS)

ATGAAAAAGCAGTATGTGGTGGGACTGTTCTTATCATTTATGTTAGTTGTTATTGCAAGCCAGAGAGCAGCTCACACCTCAGTGTATGACAAGAACCCAGAGGAGCAAGTTCGACCATCCATAGTCCCAGATGATGTGATTCAACCTCAAGCAGCAGCTGACAACTACTGGGCTCCTCATCCACAAACCGGAGTTTTTGGACCGGCCTCAGACAATCCTGCTGCAGTGGCGGCGGCAGCCAACCGTGCAGCCGATGGTGGCAACTACTCTGCTGTGGAGGAGGAAAAAGCTTGGTTCCGACCAACAAGTCTGGAGGATTCGGAGAAGCCCCACGGGTTATAG

Protein sequence

MKKQYVVGLFLSFMLVVIASQRAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAANRAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL*
BLAST of Cucsa.093870 vs. TrEMBL
Match: A0A0A0KUG6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025720 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 9.1e-47
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1

Query: 22  RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN 81
           RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN
Sbjct: 3   RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN 62

Query: 82  RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 114
           RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL
Sbjct: 63  RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 94

BLAST of Cucsa.093870 vs. TrEMBL
Match: F6HEH4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02550 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.9e-26
Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = 1

Query: 15  LVVIASQRAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPA 74
           L  +A  R+AH S+YDKNP++Q+ P +VPD++IQPQ  +D YWAPHPQTGVFGPA++  A
Sbjct: 31  LPAVAFSRSAHFSIYDKNPDDQLPPGVVPDELIQPQ--SDKYWAPHPQTGVFGPAAEQNA 90

Query: 75  AVAAAANRAADGGNYS--------AVEEEKAWFRPTSLEDSEKPH 112
           A A A +R  DGG +S        +V EEKAWFRPTSLED EKPH
Sbjct: 91  ATAGAGSR--DGGFFSSPVNGGGESVLEEKAWFRPTSLEDLEKPH 131

BLAST of Cucsa.093870 vs. TrEMBL
Match: M5X2T6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013385mg PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-24
Identity = 61/101 (60.40%), Postives = 73/101 (72.28%), Query Frame = 1

Query: 12  SFMLVVIASQRAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASD 71
           S  L  +  +RAAH SVYDKNP+EQ +PSIVPD+VI PQ   D YWAPHPQTGVFGPA++
Sbjct: 26  STQLSALTLRRAAHASVYDKNPDEQSQPSIVPDNVIPPQ--PDKYWAPHPQTGVFGPAAE 85

Query: 72  -NPAAVAAAANRAADGGNYSAVEEEKAWFRPTSLEDSEKPH 112
            N  A     +  AD G  ++V E+KAWFRPTS+ED EKPH
Sbjct: 86  HNHTAGGKDGSSPADIGEGASVLEQKAWFRPTSIEDLEKPH 124

BLAST of Cucsa.093870 vs. TrEMBL
Match: U5FUI0_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0013s07960g PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.2e-24
Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 1

Query: 12  SFMLVVIASQRAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASD 71
           SF +    S R AHTSVYDKN ++++RP++VPDDVI+PQ  +D YWAPHP+TGVFGPA++
Sbjct: 87  SFSVSNTPSLRGAHTSVYDKNLDDELRPNVVPDDVIKPQ--SDKYWAPHPRTGVFGPATE 146

Query: 72  NPAAVAAAANRAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 114
              +  +  + +   G    V EEKAWFRPTSLED EKPH L
Sbjct: 147 QHLSEISGDSASVGNGGQDPVLEEKAWFRPTSLEDLEKPHRL 186

BLAST of Cucsa.093870 vs. TrEMBL
Match: A9P9U6_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 7.0e-23
Identity = 55/102 (53.92%), Postives = 72/102 (70.59%), Query Frame = 1

Query: 12  SFMLVVIASQRAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASD 71
           SF +    S R AHTSVYDKN +++++P++VPDDVI+ Q  +D YWAPHP+TGVFGPA++
Sbjct: 27  SFSVSNTPSLRGAHTSVYDKNLDDELQPNVVPDDVIKTQ--SDKYWAPHPRTGVFGPATE 86

Query: 72  NPAAVAAAANRAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 114
              +  +  + +   G    V EEKAWFRPTSLED EKPH L
Sbjct: 87  QHLSEISGDSASVGDGGQDPVLEEKAWFRPTSLEDLEKPHRL 126

BLAST of Cucsa.093870 vs. TAIR10
Match: AT5G17165.1 (AT5G17165.1 unknown protein)

HSP 1 Score: 101.3 bits (251), Expect = 4.1e-22
Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 1

Query: 20  SQRAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAA 79
           + R  HTS YDKN EE+++PS VPD++I+P +  D YW+PHPQTGVFGP+S +       
Sbjct: 30  TSRNDHTSAYDKNVEEELQPSQVPDEMIKPDS--DKYWSPHPQTGVFGPSSSS-----TN 89

Query: 80  ANRAADGGNYSAVEEEKAWFRPTSLEDSEKPH 112
           A     GG   +V EEKAWFRPTSLED +K H
Sbjct: 90  AKDEFRGGQEDSVMEEKAWFRPTSLEDLDKTH 114

BLAST of Cucsa.093870 vs. TAIR10
Match: AT3G03150.1 (AT3G03150.1 unknown protein)

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-21
Identity = 48/92 (52.17%), Postives = 66/92 (71.74%), Query Frame = 1

Query: 20  SQRAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAA 79
           S+R+ H+S YDKN E+++  S VPD+VI+P   +D YW+PHP+TGVFGP++   +A A  
Sbjct: 36  SRRSGHSSAYDKNVEDELHASAVPDEVIKPD--SDKYWSPHPKTGVFGPSTTEHSATAEG 95

Query: 80  ANRAADGGNYSAVEEEKAWFRPTSLEDSEKPH 112
           A++       +AV EE AWFRPTSLEDS+K H
Sbjct: 96  AHQD------TAVLEETAWFRPTSLEDSDKTH 119

BLAST of Cucsa.093870 vs. NCBI nr
Match: gi|449458301|ref|XP_004146886.1| (PREDICTED: uncharacterized protein LOC101221715 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 1.0e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1

Query: 21  QRAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAA 80
           +RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAA
Sbjct: 41  RRAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAA 100

Query: 81  NRAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 114
           NRAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL
Sbjct: 101 NRAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 133

BLAST of Cucsa.093870 vs. NCBI nr
Match: gi|700198035|gb|KGN53193.1| (hypothetical protein Csa_4G025720 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1

Query: 22  RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN 81
           RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN
Sbjct: 3   RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN 62

Query: 82  RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 114
           RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL
Sbjct: 63  RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 94

BLAST of Cucsa.093870 vs. NCBI nr
Match: gi|659107731|ref|XP_008453829.1| (PREDICTED: uncharacterized protein LOC103494437 isoform X1 [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 2.4e-40
Identity = 86/93 (92.47%), Postives = 87/93 (93.55%), Query Frame = 1

Query: 21  QRAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAA 80
           +RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAA D YWAPHPQTGVFGP SDNPAAVAAA 
Sbjct: 42  RRAAHTSVYDKNPEEQVRPSIVPDDVIQPQAA-DKYWAPHPQTGVFGPTSDNPAAVAAA- 101

Query: 81  NRAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 114
           NRAAD GNYSA EEEKAWFRPTSLEDSEKPHGL
Sbjct: 102 NRAADVGNYSAAEEEKAWFRPTSLEDSEKPHGL 132

BLAST of Cucsa.093870 vs. NCBI nr
Match: gi|659107733|ref|XP_008453830.1| (PREDICTED: uncharacterized protein LOC103494437 isoform X2 [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 3.1e-40
Identity = 86/92 (93.48%), Postives = 86/92 (93.48%), Query Frame = 1

Query: 22  RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN 81
           RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAA D YWAPHPQTGVFGP SDNPAAVAAA N
Sbjct: 42  RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAA-DKYWAPHPQTGVFGPTSDNPAAVAAA-N 101

Query: 82  RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 114
           RAAD GNYSA EEEKAWFRPTSLEDSEKPHGL
Sbjct: 102 RAADVGNYSAAEEEKAWFRPTSLEDSEKPHGL 131

BLAST of Cucsa.093870 vs. NCBI nr
Match: gi|225454856|ref|XP_002274959.1| (PREDICTED: uncharacterized protein LOC100247770 isoform X1 [Vitis vinifera])

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-25
Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = 1

Query: 15  LVVIASQRAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPA 74
           L  +A  R+AH S+YDKNP++Q+ P +VPD++IQPQ  +D YWAPHPQTGVFGPA++  A
Sbjct: 31  LPAVAFSRSAHFSIYDKNPDDQLPPGVVPDELIQPQ--SDKYWAPHPQTGVFGPAAEQNA 90

Query: 75  AVAAAANRAADGGNYS--------AVEEEKAWFRPTSLEDSEKPH 112
           A A A +R  DGG +S        +V EEKAWFRPTSLED EKPH
Sbjct: 91  ATAGAGSR--DGGFFSSPVNGGGESVLEEKAWFRPTSLEDLEKPH 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KUG6_CUCSA9.1e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025720 PE=4 SV=1[more]
F6HEH4_VITVI8.9e-2659.05Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02550 PE=4 SV=... [more]
M5X2T6_PRUPE1.3e-2460.40Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013385mg PE=4 SV=1[more]
U5FUI0_POPTR2.2e-2455.88Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0013s07960g P... [more]
A9P9U6_POPTR7.0e-2353.92Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT5G17165.14.1e-2254.35 unknown protein[more]
AT3G03150.11.2e-2152.17 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449458301|ref|XP_004146886.1|1.0e-4698.92PREDICTED: uncharacterized protein LOC101221715 [Cucumis sativus][more]
gi|700198035|gb|KGN53193.1|1.3e-46100.00hypothetical protein Csa_4G025720 [Cucumis sativus][more]
gi|659107731|ref|XP_008453829.1|2.4e-4092.47PREDICTED: uncharacterized protein LOC103494437 isoform X1 [Cucumis melo][more]
gi|659107733|ref|XP_008453830.1|3.1e-4093.48PREDICTED: uncharacterized protein LOC103494437 isoform X2 [Cucumis melo][more]
gi|225454856|ref|XP_002274959.1|1.3e-2559.05PREDICTED: uncharacterized protein LOC100247770 isoform X1 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.093870.1Cucsa.093870.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35122FAMILY NOT NAMEDcoord: 18..113
score: 6.1
NoneNo IPR availablePANTHERPTHR35122:SF2SUBFAMILY NOT NAMEDcoord: 18..113
score: 6.1

The following gene(s) are paralogous to this gene:

None