Csa5G152830 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G152830
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 4839747 .. 4841360 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAATCCAACTCCAAAACTCTCAGCTTCGATATAAGCCAATCCAGCTCAACACCGGAATAACGTCGATTGCACAATATCGGAGTTCGGACACTCTCATCTTGCTCTTCTCCTACCTTCTAAAATTCATATCTCATGTAACTCTTCATATTTTTCCTCCCTCCCATCAATCTTTCTCAATCGGTGTTTAAATTTTCGTCTCTTTTCCTTAACATTACTTTTCTTGAAATTCTTGATCCTAAGTTTTGTTATTTTCATTTTATGATCAGATTTAATACACAGTCTCAGCTTCTGTTACATTCAACTCATTGGTCTCTGCGTTTGGGGAAGCTTAACTGCTCAAAGTTGTATAATACTATGCGTGGTGCAGCTGCCTTCTTGACTGTAAAGAACAAATCTAAACTGATCCATCCTCCGAAAGGATCATGGGGTATTGACCCTTCTCTTTGATTGATTAATCTTTCCATTTCTTTTTGGTAAATTACAAGATTGGCTCCTAAGTTTTCAGAGTTTTGTTGATTTTGTCTTTGTACCTTACAAAATTTCTAATAAGTTCTGAACTTGTAAAGTTAACTCCCTGTGTTTTAAAATGTTTTTTTAATTGATCTCGGAATCTCAATTTTGTATCTAATAGGTTAGGTTGTGATTTCGAAACACTTGCATGACACACATTTTTAAGGGTCTCTTAGTAGGTTGATTTTAGGTGTAAGCATTGAACAATAAAATTAGTGAAAATAAGTTTAGTGATTTGTTGAGTGCGAAAGTGAAAGTTAAAAAACTTATCAAGGTATATTAGTTAAACTTATAATTCAAGCATACAAATTTTGCTATCTATTTGAAGCTTTTTTAGTTTCTAAAGTACAAAGATTATGTTCACAAAAGTTAATGGACCAAACATATAATATAATTTTGCTATCTGTTTGGTTCGTTGCTTGAAACAATTGTTGGACTGCGATTTGATTAGGTAGTCTGACTTCCACAGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACAAAAGAGAAAGCTGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCCCCCCTTCTTGGTCCATTGGCTGTTTTTTCATTGTTAGAAACATATTTGAGTCCTGATGGAAACGATGACTAGAACGGGATGTTTTGTAATACCTTTTGGCTGAGATCAAGTGTAGTATCTGTTCTAGAAGGGGATGTCTTGTATGTTCATTAACTGTACCATTTCCACGACCTCGCTATTACCATGTATGATATTTTCCTTGTTTGTGAAATAAAGTAAAATGAAGAGTACGTAAAAAAAAAGTGGAGACCCAAACGTATTAAAATCTTTAGAAAGGGCTTGCAAATGTTCCAGAGAAACTTGAAGAGAATTATACAGATCTTTGGCATCCACTTTACCCAACGTTGTTGAGAAACTTTTATCAGCCCTACAGGAGTTTATGTATTTTTAATGTTAAATAAGGAGCTTTTTTCATGAAGATCAATGGCATATGGTATTAATTTTGACTTACATTCATGGATTGCTGGATACTTAGTACGCAATAAAGTCACGAGCTTCATTATAGCCTGATATTAGTTATAGACGAAGCCCC

mRNA sequence

ATGCGTGGTGCAGCTGCCTTCTTGACTGTAAAGAACAAATCTAAACTGATCCATCCTCCGAAAGGATCATGGGGTAGTCTGACTTCCACAGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACAAAAGAGAAAGCTGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCCCCCCTTCTTGGTCCATTGGCTGTTTTTTCATTGTTAGAAACATATTTGAGTCCTGATGGAAACGATGACTAG

Coding sequence (CDS)

ATGCGTGGTGCAGCTGCCTTCTTGACTGTAAAGAACAAATCTAAACTGATCCATCCTCCGAAAGGATCATGGGGTAGTCTGACTTCCACAGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACAAAAGAGAAAGCTGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCCCCCCTTCTTGGTCCATTGGCTGTTTTTTCATTGTTAGAAACATATTTGAGTCCTGATGGAAACGATGACTAG

Protein sequence

MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETYLSPDGNDD*

Homology

[Close]

BLAST of Csa5G152830 vs. TrEMBL
Match: A0A0A0KKH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152830 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 4.0e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP
Sbjct: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 88
          PPLPPLLGPLAVFSLLETYLSPDGNDD
Sbjct: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 87

[Close]

BLAST of Csa5G152830 vs. TrEMBL
Match: D7TV51_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g00230 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-20
Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 1


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSL-TSTVQRQGMKNDSEGESVVTKEKADPIAAFSR 60
          MRG AA L  KNK K I+PPKG+WGS  TST++R+G  ND   +  +T EK DPI AFS+
Sbjct: 1  MRGTAALLPAKNKLKQIYPPKGTWGSASTSTLKREG-NNDFREQGTITNEKIDPIVAFSK 60

Query: 61 PPPLPPLLGPLAVFSLLETYLSPDGNDD 88
          PPPLPP+LGPL   SLLE + S D NDD
Sbjct: 61 PPPLPPVLGPLVALSLLEAWWSRDSNDD 87

[Close]

BLAST of Csa5G152830 vs. TrEMBL
Match: A0A166JAA1_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_004614 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-15
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 1


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRGAA F  VKN     +P +  WG+ + +V ++ + NDS GE ++ KEK DPI AFS+P
Sbjct: 1  MRGAATFSCVKNN---FNPIRVKWGAKSISVPKKTLNNDS-GEVMIVKEKVDPIVAFSKP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSPDGND 87
          PPLPP++GPL V SLL++Y S D +D
Sbjct: 61 PPLPPVIGPLVVLSLLDSYFSRDNDD 82

[Close]

BLAST of Csa5G152830 vs. TrEMBL
Match: A0A067G9P5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034695mg PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.2e-15
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 1


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRG +A L+ K+K K I+   GS G + +T  ++ +  DS    ++TKE+A+P  AF +P
Sbjct: 1  MRGTSALLSAKSKLKPIYLVTGSRGRVATTTPKKKINEDSPERGLITKEEAEPTVAFGKP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 88
          PPLPP+LGPL   SLLET+ S DG+DD
Sbjct: 61 PPLPPVLGPLVALSLLETWSSRDGDDD 87

[Close]

BLAST of Csa5G152830 vs. TrEMBL
Match: V4TS70_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023096mg PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-14
Identity = 41/87 (47.13%), Postives = 58/87 (66.67%), Query Frame = 1


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRG +A L+ K+K K I+   GS G + +T  ++ +  DS    ++TKE+A+P  AF +P
Sbjct: 1  MRGTSALLSAKSKLKPIYLVTGSRGRVATTTPKKKINEDSPERGLITKEEAEPTVAFGKP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 88
          PPLPP+LGPL   S LET+ S DG+DD
Sbjct: 61 PPLPPVLGPLVALSWLETWSSRDGDDD 87

[Close]

BLAST of Csa5G152830 vs. NCBI nr
Match: gi|700194891|gb|KGN50068.1| (hypothetical protein Csa_5G152830 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 5.7e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP
Sbjct: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 88
          PPLPPLLGPLAVFSLLETYLSPDGNDD
Sbjct: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 87

[Close]

BLAST of Csa5G152830 vs. NCBI nr
Match: gi|659073913|ref|XP_008437320.1| (PREDICTED: uncharacterized protein LOC103482776 isoform X1 [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 1.0e-38
Identity = 82/87 (94.25%), Postives = 83/87 (95.40%), Query Frame = 1


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRGAAA LTVKNK KLIHP KGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFS+P
Sbjct: 1  MRGAAALLTVKNKPKLIHPTKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSKP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 88
          PPLPPLLGPLAV SLLETYLSPDGNDD
Sbjct: 61 PPLPPLLGPLAVLSLLETYLSPDGNDD 87

[Close]

BLAST of Csa5G152830 vs. NCBI nr
Match: gi|659073915|ref|XP_008437321.1| (PREDICTED: uncharacterized protein LOC103482776 isoform X2 [Cucumis melo])

HSP 1 Score: 150.2 bits (378), Expect = 1.7e-33
Identity = 76/87 (87.36%), Postives = 77/87 (88.51%), Query Frame = 1


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRGAAA LTVKNK KLIHP KGSW      VQRQGMKNDSEGESVVTKEKADPIAAFS+P
Sbjct: 1  MRGAAALLTVKNKPKLIHPTKGSW------VQRQGMKNDSEGESVVTKEKADPIAAFSKP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 88
          PPLPPLLGPLAV SLLETYLSPDGNDD
Sbjct: 61 PPLPPLLGPLAVLSLLETYLSPDGNDD 81

[Close]

BLAST of Csa5G152830 vs. NCBI nr
Match: gi|297742227|emb|CBI34376.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-20
Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 1


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSL-TSTVQRQGMKNDSEGESVVTKEKADPIAAFSR 60
          MRG AA L  KNK K I+PPKG+WGS  TST++R+G  ND   +  +T EK DPI AFS+
Sbjct: 1  MRGTAALLPAKNKLKQIYPPKGTWGSASTSTLKREG-NNDFREQGTITNEKIDPIVAFSK 60

Query: 61 PPPLPPLLGPLAVFSLLETYLSPDGNDD 88
          PPPLPP+LGPL   SLLE + S D NDD
Sbjct: 61 PPPLPPVLGPLVALSLLEAWWSRDSNDD 87

[Close]

BLAST of Csa5G152830 vs. NCBI nr
Match: gi|1009156882|ref|XP_015896470.1| (PREDICTED: uncharacterized protein LOC107430187 [Ziziphus jujuba])

HSP 1 Score: 95.5 bits (236), Expect = 4.9e-17
Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 1


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSL-TSTVQRQGMKNDSEGESVVTKEKADPIAAFSR 60
          MRG AA    KNK K I+P KGSWG+  TST ++Q      E    VTKEK  P+ AFSR
Sbjct: 1  MRGIAALTPAKNKFKQIYPLKGSWGNAATSTPKKQRNNEPGEERGPVTKEKDVPVVAFSR 60

Query: 61 PPPLPPLLGPLAVFSLLETYLSPDGNDD 88
          PPPLPP++GPL + SLLET+   DGND+
Sbjct: 61 PPPLPPVVGPLVLLSLLETWSGRDGNDN 88

The following BLAST results are available for this feature:

BLAST of Csa5G152830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKH2_CUCSA	4.0e-42	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152830 PE=4 SV=1	[more]
D7TV51_VITVI	1.5e-20	60.23	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g00230 PE=4 SV=...	[more]
A0A166JAA1_DAUCA	3.2e-15	51.16	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_004614 PE=4 SV=1	[more]
A0A067G9P5_CITSI	4.2e-15	48.28	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034695mg PE=4 SV=1	[more]
V4TS70_9ROSI	2.1e-14	47.13	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023096mg PE=4 SV=1	[more]

BLAST of Csa5G152830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194891\|gb\|KGN50068.1\|	5.7e-42	100.00	hypothetical protein Csa_5G152830 [Cucumis sativus]	[more]
gi\|659073913\|ref\|XP_008437320.1\|	1.0e-38	94.25	PREDICTED: uncharacterized protein LOC103482776 isoform X1 [Cucumis melo]	[more]
gi\|659073915\|ref\|XP_008437321.1\|	1.7e-33	87.36	PREDICTED: uncharacterized protein LOC103482776 isoform X2 [Cucumis melo]	[more]
gi\|297742227\|emb\|CBI34376.3\|	2.1e-20	60.23	unnamed protein product [Vitis vinifera]	[more]
gi\|1009156882\|ref\|XP_015896470.1\|	4.9e-17	55.68	PREDICTED: uncharacterized protein LOC107430187 [Ziziphus jujuba]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU086393	cucumber EST collection version 3.0	transcribed_cluster
CU110050	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G152830.1	Csa5G152830.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU086393	CU086393	transcribed_cluster
CU110050	CU110050	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G152830	Cla011421	Watermelon (97103) v1	cuwmB408
Csa5G152830	MELO3C005703	Melon (DHL92) v3.5.1	cumeB357
Csa5G152830	ClCG01G002420	Watermelon (Charleston Gray)	cuwcgB364
Csa5G152830	Lsi09G002280	Bottle gourd (USVL1VR-Ls)	culsiB322
Csa5G152830	MELO3C005703.2	Melon (DHL92) v3.6.1	cumedB336
Csa5G152830	Cla97C01G002490	Watermelon (97103) v2	cuwmbB336
Csa5G152830	CSPI05G05120	Wild cucumber (PI 183967)	cpicuB240
Csa5G152830	CsGy5G002420	Cucumber (Gy14) v2	cgybcuB224

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G152830	Melon (DHL92) v3.6.1	cumedB369
Csa5G152830	Melon (DHL92) v3.6.1	cumedB388
Csa5G152830	Melon (DHL92) v3.6.1	cumedB394
Csa5G152830	Silver-seed gourd	carcuB0939
Csa5G152830	Silver-seed gourd	carcuB0954
Csa5G152830	Watermelon (97103) v2	cuwmbB382
Csa5G152830	Watermelon (97103) v2	cuwmbB389
Csa5G152830	Wax gourd	cuwgoB451
Csa5G152830	Cucumber (Chinese Long) v2	cucuB097
Csa5G152830	Cucumber (Chinese Long) v2	cucuB141
Csa5G152830	Cucumber (Chinese Long) v2	cucuB164
Csa5G152830	Cucumber (Gy14) v1	cgycuB130
Csa5G152830	Cucumber (Gy14) v1	cgycuB194
Csa5G152830	Cucumber (Gy14) v1	cgycuB434
Csa5G152830	Cucurbita maxima (Rimu)	cmacuB298
Csa5G152830	Cucurbita maxima (Rimu)	cmacuB343
Csa5G152830	Cucurbita maxima (Rimu)	cmacuB366
Csa5G152830	Cucurbita maxima (Rimu)	cmacuB608
Csa5G152830	Cucurbita maxima (Rimu)	cmacuB734
Csa5G152830	Cucurbita moschata (Rifu)	cmocuB286
Csa5G152830	Cucurbita moschata (Rifu)	cmocuB330
Csa5G152830	Cucurbita moschata (Rifu)	cmocuB598
Csa5G152830	Cucurbita moschata (Rifu)	cmocuB728
Csa5G152830	Melon (DHL92) v3.5.1	cumeB385
Csa5G152830	Melon (DHL92) v3.5.1	cumeB404
Csa5G152830	Melon (DHL92) v3.5.1	cumeB407
Csa5G152830	Watermelon (Charleston Gray)	cuwcgB393
Csa5G152830	Watermelon (Charleston Gray)	cuwcgB399
Csa5G152830	Watermelon (97103) v1	cuwmB399
Csa5G152830	Watermelon (97103) v1	cuwmB407
Csa5G152830	Cucurbita pepo (Zucchini)	cpecuB174
Csa5G152830	Cucurbita pepo (Zucchini)	cpecuB736
Csa5G152830	Bottle gourd (USVL1VR-Ls)	culsiB333
Csa5G152830	Bottle gourd (USVL1VR-Ls)	culsiB381
Csa5G152830	Cucumber (Gy14) v2	cgybcuB126
Csa5G152830	Cucumber (Gy14) v2	cgybcuB182
Csa5G152830	Cucumber (Gy14) v2	cgybcuB278