Cla97C01G002490 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G002490
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Beta-carotene 3-hydroxylase
Location	Cla97Chr01 : 2237994 .. 2238822 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTGGTGCAGCTGCCTTATTGACTGTAAAGAACAAATCTAAACTGATCCATCCTCTGAAAGGATCATGGGGTATTGTTCCTTCTCTTTGATTGATTTAATCTTTCCATTTCTTTTTGGTAAATTACAATATTGGCTCCTAAGTTTTCAGAGTTGTGTCGTTTTAGTCTTTGTACCGTGAATAGTTTCTAATAAGTTCTAATTTCTAAAATTAAATCCCTGTATTTTAAAATGTTTTGAATAGATCTCATAATCTCAATTTTGCATCTAATAAGTCTAGGCCGTGAATTTGTTCAACACTTGCATGACACATATTTTTAAAGGTCCCTTGGTGGGTTGATTTCAGGTCTAAGCATTGAACAATAAAATTAGTGAAAATAAAGGAAGAGATTTATTGGCTACTAAATTGAAAGTTCAAAGACTTTTTCAACATTTTAAGGTACATTAGGTAAACTTATAATTCAACTATACAAATTTTGCAACCTATTTGAATCTTTTAGTTTTTAAAGTACAGATATTATATAGAGAAAAGTTATTGGACCAAACATATTCTATAATTTGACTGTTTCATTTTTGTTTGTTTCCTTGCCTTGCAATTTCATGACATGAAACAATTGTTGAACTGCAATTTGATTAGGTAGTCTGGCCTCATCAGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACCAAAGAGAAAGCAGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCTCCCCTTCTTGGTCCATTGGCTGTTTTCTCATTGTTAGAAACGTATTTGAGTCGTGATGGAAATGATGACTAG

mRNA sequence

ATGCGTGGTGCAGCTGCCTTATTGACTGTAAAGAACAAATCTAAACTGATCCATCCTCTGAAAGGATCATGGGGTAGTCTGGCCTCATCAGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACCAAAGAGAAAGCAGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCTCCCCTTCTTGGTCCATTGGCTGTTTTCTCATTGTTAGAAACGTATTTGAGTCGTGATGGAAATGATGACTAG

Coding sequence (CDS)

ATGCGTGGTGCAGCTGCCTTATTGACTGTAAAGAACAAATCTAAACTGATCCATCCTCTGAAAGGATCATGGGGTAGTCTGGCCTCATCAGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACCAAAGAGAAAGCAGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCTCCCCTTCTTGGTCCATTGGCTGTTTTCTCATTGTTAGAAACGTATTTGAGTCGTGATGGAAATGATGACTAG

Protein sequence

MRGAAALLTVKNKSKLIHPLKGSWGSLASSVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETYLSRDGNDD

Homology

[Close]

BLAST of Cla97C01G002490 vs. NCBI nr
Match: KGN50068.1 (hypothetical protein Csa_5G152830 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 2.8e-37
Identity = 82/87 (94.25%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MRGAAALLTVKNKSKLIHPLKGSWGSLASSVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRGAAA LTVKNKSKLIHP KGSWGSL S+VQRQGMKNDSEGESVVTKEKADPIAAFSRP
Sbjct: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSRDGNDD 88
          PPLPPLLGPLAVFSLLETYLS DGNDD
Sbjct: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 87

[Close]

BLAST of Cla97C01G002490 vs. NCBI nr
Match: CBI34376.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 104.4 bits (259), Expect = 2.0e-19
Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 1  MRGAAALLTVKNKSKLIHPLKGSWGSLASSVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRG AALL  KNK K I+P KG+WGS ++S  ++   ND   +  +T EK DPI AFS+P
Sbjct: 1  MRGTAALLPAKNKLKQIYPPKGTWGSASTSTLKREGNNDFREQGTITNEKIDPIVAFSKP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSRDGNDD 88
          PPLPP+LGPL   SLLE + SRD NDD
Sbjct: 61 PPLPPVLGPLVALSLLEAWWSRDSNDD 87

[Close]

BLAST of Cla97C01G002490 vs. NCBI nr
Match: POE99570.1 (hypothetical protein CFP56_68430 [Quercus suber])

HSP 1 Score: 103.2 bits (256), Expect = 4.5e-19
Identity = 52/87 (59.77%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 1  MRGAAALLTVKNKSKLIHPLKGSWGSLASSVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRG A L   K K K I+PL+ SWG++A+S  ++   N+S  E  VTKEK DPI AFSRP
Sbjct: 1  MRGTAVLSPAKYKFKQIYPLRRSWGTVATSTPKKRGNNNSGEEGPVTKEKNDPIVAFSRP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSRDGNDD 88
          PPLPP+LGPL   SLLET+ SRD NDD
Sbjct: 61 PPLPPVLGPLVALSLLETWSSRDSNDD 87

[Close]

BLAST of Cla97C01G002490 vs. NCBI nr
Match: XP_015896471.1 (uncharacterized protein LOC107430187 [Ziziphus jujuba])

HSP 1 Score: 101.3 bits (251), Expect = 1.7e-18
Identity = 51/88 (57.95%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 1  MRGAAALLTVKNKSKLIHPLKGSWGSLASSVQRQGMKND-SEGESVVTKEKADPIAAFSR 60
          MRG AAL   KNK K I+PLKGSWG+ A+S  ++   N+  E    VTKEK  P+ AFSR
Sbjct: 1  MRGIAALTPAKNKFKQIYPLKGSWGNAATSTPKKQRNNEPGEERGPVTKEKDVPVVAFSR 60

Query: 61 PPPLPPLLGPLAVFSLLETYLSRDGNDD 88
          PPPLPP++GPL + SLLET+  RDGND+
Sbjct: 61 PPPLPPVVGPLVLLSLLETWSGRDGNDN 88

[Close]

BLAST of Cla97C01G002490 vs. NCBI nr
Match: PRQ17609.1 (hypothetical protein RchiOBHm_Chr7g0196851 [Rosa chinensis])

HSP 1 Score: 100.9 bits (250), Expect = 2.2e-18
Identity = 52/88 (59.09%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 1  MRGAAALLTVKNKSKLIHPLKGSWGSLASSV-QRQGMKNDSEGESVVTKEKADPIAAFSR 60
          MRG AAL  VKN+ K IHP+KGSWG++ +S   +QG  N  E   +VTKEK DPI  FSR
Sbjct: 1  MRGVAALSPVKNRFKQIHPIKGSWGTVVTSTSNKQGNSNYGEA-GLVTKEKTDPIVVFSR 60

Query: 61 PPPLPPLLGPLAVFSLLETYLSRDGNDD 88
          PPPLPP++GPL V SLLE   SR+ +DD
Sbjct: 61 PPPLPPVIGPLLVLSLLEASWSRNNDDD 87

[Close]

BLAST of Cla97C01G002490 vs. TrEMBL
Match: tr|A0A0A0KKH2|A0A0A0KKH2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152830 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.9e-37
Identity = 82/87 (94.25%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MRGAAALLTVKNKSKLIHPLKGSWGSLASSVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRGAAA LTVKNKSKLIHP KGSWGSL S+VQRQGMKNDSEGESVVTKEKADPIAAFSRP
Sbjct: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSRDGNDD 88
          PPLPPLLGPLAVFSLLETYLS DGNDD
Sbjct: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 87

[Close]

BLAST of Cla97C01G002490 vs. TrEMBL
Match: tr|D7TV51|D7TV51_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0025g00230 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-19
Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 1  MRGAAALLTVKNKSKLIHPLKGSWGSLASSVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRG AALL  KNK K I+P KG+WGS ++S  ++   ND   +  +T EK DPI AFS+P
Sbjct: 1  MRGTAALLPAKNKLKQIYPPKGTWGSASTSTLKREGNNDFREQGTITNEKIDPIVAFSKP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSRDGNDD 88
          PPLPP+LGPL   SLLE + SRD NDD
Sbjct: 61 PPLPPVLGPLVALSLLEAWWSRDSNDD 87

[Close]

BLAST of Cla97C01G002490 vs. TrEMBL
Match: tr|A0A2P4L2S9|A0A2P4L2S9_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_68430 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-19
Identity = 52/87 (59.77%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 1  MRGAAALLTVKNKSKLIHPLKGSWGSLASSVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRG A L   K K K I+PL+ SWG++A+S  ++   N+S  E  VTKEK DPI AFSRP
Sbjct: 1  MRGTAVLSPAKYKFKQIYPLRRSWGTVATSTPKKRGNNNSGEEGPVTKEKNDPIVAFSRP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSRDGNDD 88
          PPLPP+LGPL   SLLET+ SRD NDD
Sbjct: 61 PPLPPVLGPLVALSLLETWSSRDSNDD 87

[Close]

BLAST of Cla97C01G002490 vs. TrEMBL
Match: tr|A0A2P6P6R2|A0A2P6P6R2_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0196851 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 52/88 (59.09%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 1  MRGAAALLTVKNKSKLIHPLKGSWGSLASSV-QRQGMKNDSEGESVVTKEKADPIAAFSR 60
          MRG AAL  VKN+ K IHP+KGSWG++ +S   +QG  N  E   +VTKEK DPI  FSR
Sbjct: 1  MRGVAALSPVKNRFKQIHPIKGSWGTVVTSTSNKQGNSNYGEA-GLVTKEKTDPIVVFSR 60

Query: 61 PPPLPPLLGPLAVFSLLETYLSRDGNDD 88
          PPPLPP++GPL V SLLE   SR+ +DD
Sbjct: 61 PPPLPPVIGPLLVLSLLEASWSRNNDDD 87

[Close]

BLAST of Cla97C01G002490 vs. TrEMBL
Match: tr|A0A2N9IQZ8|A0A2N9IQZ8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17274 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.3e-18
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 1  MRGAAALLTVKNKSKLIHPLKGSWGSLASSVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRG A     K K K I+P+ GSWG++A+S+ ++   N++  E  +TKEK  PI AFSRP
Sbjct: 1  MRGTAVFSPAKYKFKQIYPIAGSWGTVATSMPKKQENNNTGKEGPITKEKNGPIVAFSRP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSRDGNDD 88
          PPLPP+LGPL   SLLET+ SRD NDD
Sbjct: 61 PPLPPVLGPLVALSLLETWSSRDSNDD 87

[Close]

BLAST of Cla97C01G002490 vs. TAIR10
Match: AT4G23493.1 (unknown protein)

HSP 1 Score: 46.6 bits (109), Expect = 9.1e-06
Identity = 30/89 (33.71%), Postives = 47/89 (52.81%), Query Frame = 0


Query: 1  MRGAAALLTVKNKSKLIHPLKGSWGSLASSVQRQGMKNDSEGESVVTK---EKADPIAAF 60
          MR   AL+    K K I  + GS G +  ++  +   N++  ES   K   E  +P+ A 
Sbjct: 1  MRRFPALI---EKLKPIFTVSGSNGKVVRTIVPKKPVNENISESETMKKMEETVEPMVAL 60

Query: 61 SRPPPLPPLLGPLAVFSLLETYLSRDGND 87
          SRPPP  P +GP+ ++SLL+++ S    D
Sbjct: 61 SRPPPFSPFVGPVLMYSLLQSWTSSRDED 86

The following BLAST results are available for this feature:

BLAST of Cla97C01G002490 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50068.1	2.8e-37	94.25	hypothetical protein Csa_5G152830 [Cucumis sativus]	[more]
CBI34376.3	2.0e-19	57.47	unnamed protein product, partial [Vitis vinifera]	[more]
POE99570.1	4.5e-19	59.77	hypothetical protein CFP56_68430 [Quercus suber]	[more]
XP_015896471.1	1.7e-18	57.95	uncharacterized protein LOC107430187 [Ziziphus jujuba]	[more]
PRQ17609.1	2.2e-18	59.09	hypothetical protein RchiOBHm_Chr7g0196851 [Rosa chinensis]	[more]

BLAST of Cla97C01G002490 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KKH2\|A0A0A0KKH2_CUCSA	1.9e-37	94.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152830 PE=4 SV=1	[more]
tr\|D7TV51\|D7TV51_VITVI	1.3e-19	57.47	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0025g00230 PE=4 SV=...	[more]
tr\|A0A2P4L2S9\|A0A2P4L2S9_QUESU	3.0e-19	59.77	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_68430 PE=4 SV=1	[more]
tr\|A0A2P6P6R2\|A0A2P6P6R2_ROSCH	1.5e-18	59.09	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0196851 PE=4...	[more]
tr\|A0A2N9IQZ8\|A0A2N9IQZ8_FAGSY	4.3e-18	55.17	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17274 PE=4 SV=1	[more]

BLAST of Cla97C01G002490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G002490 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23493.1	9.1e-06	33.71	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008610	lipid biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G002490.1	Cla97C01G002490.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G002490	Cla011421	Watermelon (97103) v1	wmwmbB235
Cla97C01G002490	Csa5G152830	Cucumber (Chinese Long) v2	cuwmbB336
Cla97C01G002490	MELO3C005703	Melon (DHL92) v3.5.1	mewmbB008
Cla97C01G002490	ClCG01G002420	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G002490	CSPI05G05120	Wild cucumber (PI 183967)	cpiwmbB349
Cla97C01G002490	Lsi09G002280	Bottle gourd (USVL1VR-Ls)	lsiwmbB007
Cla97C01G002490	CsGy5G002420	Cucumber (Gy14) v2	cgybwmbB319
Cla97C01G002490	MELO3C005703.2	Melon (DHL92) v3.6.1	medwmbB006
Cla97C01G002490	CsaV3_5G002530	Cucumber (Chinese Long) v3	cucwmbB351

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G002490	Watermelon (97103) v2	wmbwmbB019
Cla97C01G002490	Watermelon (97103) v2	wmbwmbB029
Cla97C01G002490	Silver-seed gourd	carwmbB0963
Cla97C01G002490	Silver-seed gourd	carwmbB0980
Cla97C01G002490	Cucumber (Gy14) v2	cgybwmbB168
Cla97C01G002490	Cucumber (Gy14) v2	cgybwmbB256
Cla97C01G002490	Cucumber (Gy14) v2	cgybwmbB395
Cla97C01G002490	Cucumber (Gy14) v1	cgywmbB143
Cla97C01G002490	Cucumber (Gy14) v1	cgywmbB222
Cla97C01G002490	Cucumber (Gy14) v1	cgywmbB520
Cla97C01G002490	Cucurbita maxima (Rimu)	cmawmbB288
Cla97C01G002490	Cucurbita maxima (Rimu)	cmawmbB326
Cla97C01G002490	Cucurbita maxima (Rimu)	cmawmbB358
Cla97C01G002490	Cucurbita maxima (Rimu)	cmawmbB600
Cla97C01G002490	Cucurbita maxima (Rimu)	cmawmbB706
Cla97C01G002490	Cucurbita moschata (Rifu)	cmowmbB270
Cla97C01G002490	Cucurbita moschata (Rifu)	cmowmbB311
Cla97C01G002490	Cucurbita moschata (Rifu)	cmowmbB575
Cla97C01G002490	Cucurbita moschata (Rifu)	cmowmbB677
Cla97C01G002490	Cucurbita moschata (Rifu)	cmowmbB880
Cla97C01G002490	Wild cucumber (PI 183967)	cpiwmbB179
Cla97C01G002490	Wild cucumber (PI 183967)	cpiwmbB276
Cla97C01G002490	Wild cucumber (PI 183967)	cpiwmbB435
Cla97C01G002490	Cucumber (Chinese Long) v3	cucwmbB177
Cla97C01G002490	Cucumber (Chinese Long) v3	cucwmbB270
Cla97C01G002490	Cucumber (Chinese Long) v3	cucwmbB431
Cla97C01G002490	Cucumber (Chinese Long) v2	cuwmbB176
Cla97C01G002490	Cucumber (Chinese Long) v2	cuwmbB269
Cla97C01G002490	Cucumber (Chinese Long) v2	cuwmbB414
Cla97C01G002490	Bottle gourd (USVL1VR-Ls)	lsiwmbB008
Cla97C01G002490	Bottle gourd (USVL1VR-Ls)	lsiwmbB321
Cla97C01G002490	Melon (DHL92) v3.6.1	medwmbB075
Cla97C01G002490	Melon (DHL92) v3.6.1	medwmbB409
Cla97C01G002490	Melon (DHL92) v3.6.1	medwmbB449
Cla97C01G002490	Melon (DHL92) v3.5.1	mewmbB080
Cla97C01G002490	Melon (DHL92) v3.5.1	mewmbB423
Cla97C01G002490	Melon (DHL92) v3.5.1	mewmbB455
Cla97C01G002490	Watermelon (Charleston Gray)	wcgwmbB255
Cla97C01G002490	Watermelon (Charleston Gray)	wcgwmbB212
Cla97C01G002490	Watermelon (97103) v1	wmwmbB189
Cla97C01G002490	Wax gourd	wgowmbB061