CSPI05G05120 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G05120
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionBeta-carotene 3-hydroxylase
LocationChr5 : 4812892 .. 4814483 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCAATCCAACTCCAAAACTCTCAGCTTCGATATAAGCCAATCCAGCTCAACACCGGAATAACGTCGATTGCACAATATCGGAGTTCGGACACTCTCATCTTGCTCTTCTCCTACCTTCTAAAATTCATATCTCATGTAACTCTTCATATTTTTCCTCCCTCCCATCAATCTTTCTCAATCGGTGTTTAAATTTTCGTCTCTTTTCCTTAACATTACTTTTCTTGAAATTCTTGATCCTAAGTTTTGTTATTTTCATTTTATGATCAGATTTAATACACAGTCTCAGCTTCTGTTACATTCAACTCATTGGTCTCTGCGTTTGGGGAAGCTTAACTGCTCAAAGTTGTATAATACTATGCGTGGTGCAGCTGCCTTCTTGACTGTAAAGAACAAATCTAAACTGATCCATCCTCCGAAAGGATCATGGGGTATTGACCCTTCTCTTTGATTGATTAATCTTTCCATTTCTTTTTGGTAAATTACAAGATTGGCTCCTAAGTTTTCAGAGCTTTGTTGATTTTGTCTTTGTACCTTACAAAATTTCTAATAAGTTCTGAACTTGTAAAGTTAACTCCCTGTGTTTTAAAATGTTTTTTTAATTGATCTCGGAATCTCCATTTTGTATCTAATAGGTTAGGTTGTGATTTTGAAACACTTGCATGACACACATTTTTAAGGGTCTCTTAGTAGGTTGATTTTAGGTGTAAGCATTGAACAATAAAATTAGTGAAAATAAGTTTAGTGATTTGTTGAGTGCGAAAGTGAAAGTTAAAAAACTTATCAAGGTATATTAGTTAAACTTATAATTCAAGCATACAAATTTTGCTATCTATTTGAAGCTTTTTTAGTTTCTAAAGTACAAAGATTATGTTCACAAAAGTTAATGGACCAAACATATAATATAATTTTGCTATCTGTTTGGTTCGTTGCTTGAAACAATTGTTGGACTGCGATTTGATTAGGTAGTCTGACTTCCACAGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACAAAAGAGAAAGCTGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCCCCCCTTCTTGGTCCATTGGCTGTTTTTTCATTGTTAGAAACGTATTTGAGTCCTGATGGAAACGATGACTAGAACGGGATGTTTTGTAATACCTTTTGGCTGAGATCAAGTGTAGTATCTGTTCTAGAAGGGGATGTCTTGTATGTTCATTAACTGTACCATTTCCACGACCTCGCTATTACCATGTATGATATTTTCCTTGTTTGTGAAATAAAGTAAAATGAAGAGTACGTAAAAAAATGTGGAGACCCAAACGTATAAGGGTTATAAAGATTAAAATCTTTAGAAAGGGCTTGCAAATGTTCCATAGAAACTTGAAGAGAATTATACAGATCTTTGGCATCCACTTTACCCAACGTTGTTGAGAAACTTTTATCAGCCCTACAGGAGTTTATGTATTTTTAATGTTAAATAAGGAGCTTTTCTCATGAAGATCAATGGCATATGGTATTAATTTTGACTTACATTCATGGATTGCTGGATACTTAGTACGCAATAAAGTCACGAGC

mRNA sequence

ATGCGTGGTGCAGCTGCCTTCTTGACTGTAAAGAACAAATCTAAACTGATCCATCCTCCGAAAGGATCATGGGGTAGTCTGACTTCCACAGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACAAAAGAGAAAGCTGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCCCCCCTTCTTGGTCCATTGGCTGTTTTTTCATTGTTAGAAACGTATTTGAGTCCTGATGGAAACGATGACTAG

Coding sequence (CDS)

ATGCGTGGTGCAGCTGCCTTCTTGACTGTAAAGAACAAATCTAAACTGATCCATCCTCCGAAAGGATCATGGGGTAGTCTGACTTCCACAGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACAAAAGAGAAAGCTGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCCCCCCTTCTTGGTCCATTGGCTGTTTTTTCATTGTTAGAAACGTATTTGAGTCCTGATGGAAACGATGACTAG
Homology
[Close]
BLAST of CSPI05G05120 vs. TrEMBL
Match: A0A0A0KKH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152830 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 6.8e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP
Sbjct: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 88
          PPLPPLLGPLAVFSLLETYLSPDGNDD
Sbjct: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 87

[Close]
BLAST of CSPI05G05120 vs. TrEMBL
Match: D7TV51_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g00230 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-20
Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 1 

Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSL-TSTVQRQGMKNDSEGESVVTKEKADPIAAFSR 60
          MRG AA L  KNK K I+PPKG+WGS  TST++R+G  ND   +  +T EK DPI AFS+
Sbjct: 1  MRGTAALLPAKNKLKQIYPPKGTWGSASTSTLKREG-NNDFREQGTITNEKIDPIVAFSK 60

Query: 61 PPPLPPLLGPLAVFSLLETYLSPDGNDD 88
          PPPLPP+LGPL   SLLE + S D NDD
Sbjct: 61 PPPLPPVLGPLVALSLLEAWWSRDSNDD 87

[Close]
BLAST of CSPI05G05120 vs. TrEMBL
Match: A0A166JAA1_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_004614 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.4e-15
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 1 

Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRGAA F  VKN     +P +  WG+ + +V ++ + NDS GE ++ KEK DPI AFS+P
Sbjct: 1  MRGAATFSCVKNN---FNPIRVKWGAKSISVPKKTLNNDS-GEVMIVKEKVDPIVAFSKP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSPDGND 87
          PPLPP++GPL V SLL++Y S D +D
Sbjct: 61 PPLPPVIGPLVVLSLLDSYFSRDNDD 82

[Close]
BLAST of CSPI05G05120 vs. TrEMBL
Match: A0A067G9P5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034695mg PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.1e-15
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 1 

Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRG +A L+ K+K K I+   GS G + +T  ++ +  DS    ++TKE+A+P  AF +P
Sbjct: 1  MRGTSALLSAKSKLKPIYLVTGSRGRVATTTPKKKINEDSPERGLITKEEAEPTVAFGKP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 88
          PPLPP+LGPL   SLLET+ S DG+DD
Sbjct: 61 PPLPPVLGPLVALSLLETWSSRDGDDD 87

[Close]
BLAST of CSPI05G05120 vs. TrEMBL
Match: V4TS70_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023096mg PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.5e-14
Identity = 41/87 (47.13%), Postives = 58/87 (66.67%), Query Frame = 1 

Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRG +A L+ K+K K I+   GS G + +T  ++ +  DS    ++TKE+A+P  AF +P
Sbjct: 1  MRGTSALLSAKSKLKPIYLVTGSRGRVATTTPKKKINEDSPERGLITKEEAEPTVAFGKP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 88
          PPLPP+LGPL   S LET+ S DG+DD
Sbjct: 61 PPLPPVLGPLVALSWLETWSSRDGDDD 87

[Close]
BLAST of CSPI05G05120 vs. NCBI nr
Match: gi|700194891|gb|KGN50068.1| (hypothetical protein Csa_5G152830 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 9.8e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP
Sbjct: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 88
          PPLPPLLGPLAVFSLLETYLSPDGNDD
Sbjct: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 87

[Close]
BLAST of CSPI05G05120 vs. NCBI nr
Match: gi|659073913|ref|XP_008437320.1| (PREDICTED: uncharacterized protein LOC103482776 isoform X1 [Cucumis melo])

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-38
Identity = 82/87 (94.25%), Postives = 83/87 (95.40%), Query Frame = 1 

Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRGAAA LTVKNK KLIHP KGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFS+P
Sbjct: 1  MRGAAALLTVKNKPKLIHPTKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSKP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 88
          PPLPPLLGPLAV SLLETYLSPDGNDD
Sbjct: 61 PPLPPLLGPLAVLSLLETYLSPDGNDD 87

[Close]
BLAST of CSPI05G05120 vs. NCBI nr
Match: gi|659073915|ref|XP_008437321.1| (PREDICTED: uncharacterized protein LOC103482776 isoform X2 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 2.2e-33
Identity = 76/87 (87.36%), Postives = 77/87 (88.51%), Query Frame = 1 

Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRGAAA LTVKNK KLIHP KGSW      VQRQGMKNDSEGESVVTKEKADPIAAFS+P
Sbjct: 1  MRGAAALLTVKNKPKLIHPTKGSW------VQRQGMKNDSEGESVVTKEKADPIAAFSKP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 88
          PPLPPLLGPLAV SLLETYLSPDGNDD
Sbjct: 61 PPLPPLLGPLAVLSLLETYLSPDGNDD 81

[Close]
BLAST of CSPI05G05120 vs. NCBI nr
Match: gi|297742227|emb|CBI34376.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 105.9 bits (263), Expect = 3.6e-20
Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 1 

Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSL-TSTVQRQGMKNDSEGESVVTKEKADPIAAFSR 60
          MRG AA L  KNK K I+PPKG+WGS  TST++R+G  ND   +  +T EK DPI AFS+
Sbjct: 1  MRGTAALLPAKNKLKQIYPPKGTWGSASTSTLKREG-NNDFREQGTITNEKIDPIVAFSK 60

Query: 61 PPPLPPLLGPLAVFSLLETYLSPDGNDD 88
          PPPLPP+LGPL   SLLE + S D NDD
Sbjct: 61 PPPLPPVLGPLVALSLLEAWWSRDSNDD 87

[Close]
BLAST of CSPI05G05120 vs. NCBI nr
Match: gi|1009156882|ref|XP_015896470.1| (PREDICTED: uncharacterized protein LOC107430187 [Ziziphus jujuba])

HSP 1 Score: 94.7 bits (234), Expect = 8.3e-17
Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 1 

Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSL-TSTVQRQGMKNDSEGESVVTKEKADPIAAFSR 60
          MRG AA    KNK K I+P KGSWG+  TST ++Q      E    VTKEK  P+ AFSR
Sbjct: 1  MRGIAALTPAKNKFKQIYPLKGSWGNAATSTPKKQRNNEPGEERGPVTKEKDVPVVAFSR 60

Query: 61 PPPLPPLLGPLAVFSLLETYLSPDGNDD 88
          PPPLPP++GPL + SLLET+   DGND+
Sbjct: 61 PPPLPPVVGPLVLLSLLETWSGRDGNDN 88

The following BLAST results are available for this feature:
BLAST of CSPI05G05120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G05120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKH2_CUCSA6.8e-42100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152830 PE=4 SV=1[more]
D7TV51_VITVI2.5e-2060.23Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g00230 PE=4 SV=... [more]
A0A166JAA1_DAUCA5.4e-1551.16Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_004614 PE=4 SV=1[more]
A0A067G9P5_CITSI7.1e-1548.28Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034695mg PE=4 SV=1[more]
V4TS70_9ROSI3.5e-1447.13Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023096mg PE=4 SV=1[more]
BLAST of CSPI05G05120 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G05120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194891|gb|KGN50068.1|9.8e-42100.00hypothetical protein Csa_5G152830 [Cucumis sativus][more]
gi|659073913|ref|XP_008437320.1|1.7e-3894.25PREDICTED: uncharacterized protein LOC103482776 isoform X1 [Cucumis melo][more]
gi|659073915|ref|XP_008437321.1|2.2e-3387.36PREDICTED: uncharacterized protein LOC103482776 isoform X2 [Cucumis melo][more]
gi|297742227|emb|CBI34376.3|3.6e-2060.23unnamed protein product [Vitis vinifera][more]
gi|1009156882|ref|XP_015896470.1|8.3e-1755.68PREDICTED: uncharacterized protein LOC107430187 [Ziziphus jujuba][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G05120.1CSPI05G05120.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G05120Cla011421Watermelon (97103) v1cpiwmB416
CSPI05G05120Csa5G152830Cucumber (Chinese Long) v2cpicuB240
CSPI05G05120MELO3C005703Melon (DHL92) v3.5.1cpimeB348
CSPI05G05120ClCG01G002420Watermelon (Charleston Gray)cpiwcgB379
CSPI05G05120Lsi09G002280Bottle gourd (USVL1VR-Ls)cpilsiB322
CSPI05G05120MELO3C005703.2Melon (DHL92) v3.6.1cpimedB338
CSPI05G05120CsaV3_5G002530Cucumber (Chinese Long) v3cpicucB285
CSPI05G05120Cla97C01G002490Watermelon (97103) v2cpiwmbB349
CSPI05G05120CsGy5G002420Cucumber (Gy14) v2cgybcpiB226
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G05120Cucurbita moschata (Rifu)cmocpiB295
CSPI05G05120Cucurbita moschata (Rifu)cmocpiB338
CSPI05G05120Cucurbita moschata (Rifu)cmocpiB606
CSPI05G05120Cucurbita moschata (Rifu)cmocpiB734
CSPI05G05120Cucumber (Chinese Long) v2cpicuB223
CSPI05G05120Cucumber (Chinese Long) v2cpicuB237
CSPI05G05120Cucumber (Chinese Long) v2cpicuB257
CSPI05G05120Melon (DHL92) v3.5.1cpimeB380
CSPI05G05120Melon (DHL92) v3.5.1cpimeB402
CSPI05G05120Melon (DHL92) v3.5.1cpimeB405
CSPI05G05120Watermelon (Charleston Gray)cpiwcgB411
CSPI05G05120Watermelon (Charleston Gray)cpiwcgB416
CSPI05G05120Watermelon (97103) v1cpiwmB407
CSPI05G05120Watermelon (97103) v1cpiwmB415
CSPI05G05120Cucurbita pepo (Zucchini)cpecpiB176
CSPI05G05120Cucurbita pepo (Zucchini)cpecpiB738
CSPI05G05120Bottle gourd (USVL1VR-Ls)cpilsiB333
CSPI05G05120Bottle gourd (USVL1VR-Ls)cpilsiB385
CSPI05G05120Melon (DHL92) v3.6.1cpimedB375
CSPI05G05120Melon (DHL92) v3.6.1cpimedB397
CSPI05G05120Melon (DHL92) v3.6.1cpimedB402
CSPI05G05120Cucumber (Gy14) v2cgybcpiB128
CSPI05G05120Cucumber (Gy14) v2cgybcpiB185
CSPI05G05120Cucumber (Gy14) v2cgybcpiB284
CSPI05G05120Silver-seed gourdcarcpiB0961
CSPI05G05120Silver-seed gourdcarcpiB0977
CSPI05G05120Cucumber (Chinese Long) v3cpicucB264
CSPI05G05120Cucumber (Chinese Long) v3cpicucB281
CSPI05G05120Cucumber (Chinese Long) v3cpicucB307
CSPI05G05120Watermelon (97103) v2cpiwmbB400
CSPI05G05120Watermelon (97103) v2cpiwmbB408
CSPI05G05120Wax gourdcpiwgoB454
CSPI05G05120Wild cucumber (PI 183967)cpicpiB112
CSPI05G05120Wild cucumber (PI 183967)cpicpiB157
CSPI05G05120Wild cucumber (PI 183967)cpicpiB182
CSPI05G05120Cucumber (Gy14) v1cgycpiB131
CSPI05G05120Cucumber (Gy14) v1cgycpiB197
CSPI05G05120Cucumber (Gy14) v1cgycpiB457
CSPI05G05120Cucurbita maxima (Rimu)cmacpiB303
CSPI05G05120Cucurbita maxima (Rimu)cmacpiB347
CSPI05G05120Cucurbita maxima (Rimu)cmacpiB370
CSPI05G05120Cucurbita maxima (Rimu)cmacpiB614
CSPI05G05120Cucurbita maxima (Rimu)cmacpiB741