Csa4G665120 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G665120
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	TMV response-related protein; contains IPR025322 (Protein of unknown function DUF4228)
Location	Chr4 : 23229525 .. 23230924 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCTGACACCTCTCCTCCTTCCACTTCTATTATCCCTCCTCGTCATATCCCCAAATTAATTAAATTTCCCTGGAAAACGCCGATCGAGACAATCGGTCCTGATGGGCGGGTGTTTCTCAAACTGCCTAATTATTCCCAAAGTCTCTTCGTCTGTTCCTCCACCTCCTCCTCCTACCGCCAAAGTTATCTCTTTACAAGGACATCTCCGGGAATACCCTGTTCCTATATCCGTCTCCCGCGTTCTTCAGACCGAAAATTCATCTTCTTCCACTTCCGACTCTTTTCTATGCAACTCCGACCGCTTATTCTACGATGATTTCATTCCGTCTTTGCCTCTCGACCACCAGCTCCACCCCAATCAGATCTATTTCATCCTTCCTTCCTCCAACCTCCACCACCGATTGACCGCCCCTGATATGGCCGCCTTAGCCGTCAAAGCCACCCTCGCCCTCCAGAATGCCTCCACCAACAACCTCCATCTCCCTCATAACAAGGGTCGTCGTCGTCGTATTTCTCCCCTCTTTGATCTTGATAGCCCCAACGACCAACAAAACGAACACGAACACGAACATGCCCTCTCCACTAACTCTAACTCCAAGAACAACACCACCTCCTCCTCCGTTAAAAAATTGCAGAGATTGACATCCAGAAGGGCAAAAATGGCAGTTCGTTCCTTTAAACTCAGGTTGAGCACCATCTACGAAGGCACCGTTCTGTAATCGTATGGATTAGGGATTACTTCACCCACCGGTTTGCACGAAGAGAGTTTTGGTAAACAATTCAATTCAATTCAATTCATGGTCCATATGATTCCAACTTCCAATTGATCACATTGGGACCTGCTTTATGTGCGTTCGGATATACACATAACATACGCAGGGCCGGATCTATTCAGGGTTCGAGGCACGTTGGTTCTACATTTGTATATATTACTGTTTATATTATATACATCCATCAAATAACATACATGGAATGAACACGGTTGAAGTTCTTTTCATATAACCAGTCGAATTCTTTTTGCCTTTTCTTTTGATTAAACTAATTAAATATGCAAACCAGAATAGTATTGATTAGTAGGGGAGAGTGGAGCCCATTAAAAGTTCAAAATACAATGTGAATGTGGCGAAGAAGAATGATTCAGAGTTTGAAGATTGAAGTGGGCGCAGCCAAAGTTGATGGACTTCGAAGACCATGGCATCTGCCCATGCCACCTTGTTTACCAGAACACCACACAATATCTCTTCTTTCTTCTCTTTTCTGTTCCGTTTGGGTCCAACCCGTTTCCAATTCCTAATTGCATCTGTGTAATCTTTCAGACAATTACTAAATATTATCATTTCTGTTTCTTTTTTACGCGGAAAATGCAAATAATGTACTAATCCTTATAATTTTGCAGCCC

mRNA sequence

ATGGGCGGGTGTTTCTCAAACTGCCTAATTATTCCCAAAGTCTCTTCGTCTGTTCCTCCACCTCCTCCTCCTACCGCCAAAGTTATCTCTTTACAAGGACATCTCCGGGAATACCCTGTTCCTATATCCGTCTCCCGCGTTCTTCAGACCGAAAATTCATCTTCTTCCACTTCCGACTCTTTTCTATGCAACTCCGACCGCTTATTCTACGATGATTTCATTCCGTCTTTGCCTCTCGACCACCAGCTCCACCCCAATCAGATCTATTTCATCCTTCCTTCCTCCAACCTCCACCACCGATTGACCGCCCCTGATATGGCCGCCTTAGCCGTCAAAGCCACCCTCGCCCTCCAGAATGCCTCCACCAACAACCTCCATCTCCCTCATAACAAGGGTCGTCGTCGTCGTATTTCTCCCCTCTTTGATCTTGATAGCCCCAACGACCAACAAAACGAACACGAACACGAACATGCCCTCTCCACTAACTCTAACTCCAAGAACAACACCACCTCCTCCTCCGTTAAAAAATTGCAGAGATTGACATCCAGAAGGGCAAAAATGGCAGTTCGTTCCTTTAAACTCAGGTTGAGCACCATCTACGAAGGCACCGTTCTGTAA

Coding sequence (CDS)

ATGGGCGGGTGTTTCTCAAACTGCCTAATTATTCCCAAAGTCTCTTCGTCTGTTCCTCCACCTCCTCCTCCTACCGCCAAAGTTATCTCTTTACAAGGACATCTCCGGGAATACCCTGTTCCTATATCCGTCTCCCGCGTTCTTCAGACCGAAAATTCATCTTCTTCCACTTCCGACTCTTTTCTATGCAACTCCGACCGCTTATTCTACGATGATTTCATTCCGTCTTTGCCTCTCGACCACCAGCTCCACCCCAATCAGATCTATTTCATCCTTCCTTCCTCCAACCTCCACCACCGATTGACCGCCCCTGATATGGCCGCCTTAGCCGTCAAAGCCACCCTCGCCCTCCAGAATGCCTCCACCAACAACCTCCATCTCCCTCATAACAAGGGTCGTCGTCGTCGTATTTCTCCCCTCTTTGATCTTGATAGCCCCAACGACCAACAAAACGAACACGAACACGAACATGCCCTCTCCACTAACTCTAACTCCAAGAACAACACCACCTCCTCCTCCGTTAAAAAATTGCAGAGATTGACATCCAGAAGGGCAAAAATGGCAGTTCGTTCCTTTAAACTCAGGTTGAGCACCATCTACGAAGGCACCGTTCTGTAA

Protein sequence

MGGCFSNCLIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDSFLCNSDRLFYDDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLALQNASTNNLHLPHNKGRRRRISPLFDLDSPNDQQNEHEHEHALSTNSNSKNNTTSSSVKKLQRLTSRRAKMAVRSFKLRLSTIYEGTVL*

Homology

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BLAST of Csa4G665120 vs. TrEMBL
Match: A0A0A0L5Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G665120 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 1.7e-112
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1


Query: 1   MGGCFSNCLIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDS 60
           MGGCFSNCLIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDS
Sbjct: 1   MGGCFSNCLIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDS 60

Query: 61  FLCNSDRLFYDDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLALQNA 120
           FLCNSDRLFYDDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLALQNA
Sbjct: 61  FLCNSDRLFYDDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLALQNA 120

Query: 121 STNNLHLPHNKGRRRRISPLFDLDSPNDQQNEHEHEHALSTNSNSKNNTTSSSVKKLQRL 180
           STNNLHLPHNKGRRRRISPLFDLDSPNDQQNEHEHEHALSTNSNSKNNTTSSSVKKLQRL
Sbjct: 121 STNNLHLPHNKGRRRRISPLFDLDSPNDQQNEHEHEHALSTNSNSKNNTTSSSVKKLQRL 180

Query: 181 TSRRAKMAVRSFKLRLSTIYEGTVL 206
           TSRRAKMAVRSFKLRLSTIYEGTVL
Sbjct: 181 TSRRAKMAVRSFKLRLSTIYEGTVL 205

[Close]

BLAST of Csa4G665120 vs. TrEMBL
Match: A0A061FGL4_THECC (Poly polymerase 1, putative OS=Theobroma cacao GN=TCM_034801 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.4e-42
Identity = 103/213 (48.36%), Postives = 144/213 (67.61%), Query Frame = 1


Query: 1   MGGCFSNCLIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDS 60
           MG CFS    +   ++      PPTA+V+SL G L +Y +P+ VS+VLQ E ++SS+S S
Sbjct: 1   MGTCFS----LNSRTALSESAAPPTAQVVSLNGDLHKYNIPVLVSQVLQAEAAASSSSSS 60

Query: 61  -------FLCNSDRLFYDDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKA 120
                  FLCNSDRL+YDD+IP+L +DHQL  NQIYF+LP+S L  RLT+ DMAALAVKA
Sbjct: 61  SLPSSAIFLCNSDRLYYDDYIPALDIDHQLQANQIYFVLPNSKLQQRLTSKDMAALAVKA 120

Query: 121 TLALQNASTNNLHLPHNKGRRRRISPLFDLDSPNDQQNEHEHEHALSTNSNSKNN-TTSS 180
           ++A+QN+S N  H    + ++ RISP+  +       ++ +   A  + +  +   + S+
Sbjct: 121 SVAIQNSSKNESH----RRKKARISPVLLVAQSLPVVDKDDAPTAPKSFAEPRPRLSRSA 180

Query: 181 SVKKLQRLTSRRAKMAVRSFKLRLSTIYEGTVL 206
           S++KL R TSRRAK+AVRSF+LRLSTIYEG+VL
Sbjct: 181 SIRKLHRYTSRRAKLAVRSFRLRLSTIYEGSVL 205

[Close]

BLAST of Csa4G665120 vs. TrEMBL
Match: B9H5Y6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s28050g PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.9e-42
Identity = 110/223 (49.33%), Postives = 144/223 (64.57%), Query Frame = 1


Query: 1   MGGCFSNCLIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDS 60
           MGGCFS+  +            P TAKVIS+ G LREY +P  VS+VLQ E +SSS+S S
Sbjct: 1   MGGCFSSSFL----GEDSEQVRPQTAKVISIHGDLREYYLPAFVSQVLQAEIASSSSSSS 60

Query: 61  ----FLCNSDRLFYDDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLA 120
               FLCNSD L YD++IP+L  D  LH +QIYF+LP S L HRLT+ DMAALAVKA+LA
Sbjct: 61  SSSWFLCNSDLLLYDEYIPALDSDVPLHADQIYFVLPKSKLQHRLTSSDMAALAVKASLA 120

Query: 121 LQNASTNNLHLPHNKGRRRRISPLFDLDSPNDQQNEHEHEHALSTNSNSKNN-------- 180
           LQN+S  +      +G++ RISP+  L +P+   +EH+ ++ +  + + K          
Sbjct: 121 LQNSSNKD----PRRGKKARISPVL-LVNPD---HEHQGQNVVKVSFDRKPKPQVQQRQP 180

Query: 181 ------TTSSSVKKLQRLTSRRAKMAVRSFKLRLSTIYEGTVL 206
                 + S SV+K Q+ TSRRAK+AVRSFKLRL+TIYEGTVL
Sbjct: 181 ANPIVFSRSGSVRKFQKYTSRRAKLAVRSFKLRLTTIYEGTVL 211

[Close]

BLAST of Csa4G665120 vs. TrEMBL
Match: M5WZG0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020532mg PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 5.5e-42
Identity = 110/225 (48.89%), Postives = 147/225 (65.33%), Query Frame = 1


Query: 1   MGGCFSNCLIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVL---QTENSSSST 60
           MGGC S+  +I    +       PTAKVIS+ G LREYPVP+ VS+VL   QT +SSSS+
Sbjct: 1   MGGCVSS--VIRSSHNEELLLNSPTAKVISINGSLREYPVPVIVSQVLEAGQTASSSSSS 60

Query: 61  SDSFLCNSDRLFYDDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLAL 120
           S SFLCNSDRL+YD++IP L  + +L  +QIYFILP S L HRL+A DMAALAV+A+LA 
Sbjct: 61  SSSFLCNSDRLYYDNYIPVLDSEDELEADQIYFILPRSKLEHRLSATDMAALAVRASLAF 120

Query: 121 QNASTN-----------NLHLPHNKGRRRRISPLFDLDSPNDQQNEHEHEHALSTN---- 180
           Q+AS++           +LH P    ++ R+SP+    + +D   +  +E  +  +    
Sbjct: 121 QDASSSSSSYKTKEKKKDLH-PRRNYKKARVSPVLINYANSDMDRDDFNEITIGDSAYKG 180

Query: 181 --SNSKNNTTSSSVKKLQRLTSRRAKMAVRSFKLRLSTIYEGTVL 206
             S  +  + S SVKKLQR TS+RAKMAVRSF+LRL+TI EG+VL
Sbjct: 181 QMSQKQQISRSKSVKKLQRYTSKRAKMAVRSFRLRLTTIDEGSVL 222

[Close]

BLAST of Csa4G665120 vs. TrEMBL
Match: B9R8V8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1602490 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 7.9e-41
Identity = 107/220 (48.64%), Postives = 139/220 (63.18%), Query Frame = 1


Query: 1   MGGCFSNCLIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDS 60
           MG CFS C +  +         PP A V+S+ G LR+Y VP+  S+VL  E +SSS+S S
Sbjct: 1   MGSCFS-CSVFSESDLL-----PPAANVVSINGTLRQYNVPVIASQVLDAEAASSSSSSS 60

Query: 61  ---FLCNSDRLFYDDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLAL 120
              FLCNSD L YDD IP+L  D QL+ NQ+YFILP S L +RLTAPDMAALAVKA++AL
Sbjct: 61  TSFFLCNSDFLSYDDLIPALDSDAQLYANQLYFILPKSKLQNRLTAPDMAALAVKASVAL 120

Query: 121 QNASTNNLHLPHNKGRRRRISPLFDLDSPNDQQN----EHEHEHALSTNSNSKNN----- 180
           QNAS N  H    + ++ RISP+  ++  + Q++         +   T   +K       
Sbjct: 121 QNASKNEAH----RRKKARISPVLLVNQSSSQRHLLNPTSGDAYPRKTFQKAKGEQPPVG 180

Query: 181 ---TTSSSVKKLQRLTSRRAKMAVRSFKLRLSTIYEGTVL 206
              + S SV++L R TSRRAK+AVRSF+LRL+TIYEGTVL
Sbjct: 181 MGFSRSGSVRRLHRYTSRRAKLAVRSFRLRLTTIYEGTVL 210

[Close]

BLAST of Csa4G665120 vs. TAIR10
Match: AT1G76600.1 (AT1G76600.1 unknown protein)

HSP 1 Score: 157.9 bits (398), Expect = 6.6e-39
Identity = 94/200 (47.00%), Postives = 126/200 (63.00%), Query Frame = 1


Query: 25  TAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDS----FLCNSDRLFYDDFIPSLPLD 84
           TAK++++ G LREY VP+  S+VL++E++SSS+S S    FLCNSD L+YDDFIP++  D
Sbjct: 18  TAKIVTINGDLREYDVPVLASQVLESESTSSSSSSSSSSYFLCNSDSLYYDDFIPAIESD 77

Query: 85  HQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLALQNASTNNLHLPHNKGRRRRISPL 144
             L  NQIYF+LP S   +RL+A DMAALAVKA++A++ A+       + + R  RISP+
Sbjct: 78  EILQANQIYFVLPISKRQYRLSASDMAALAVKASVAIEKAAGKK----NRRRRSGRISPV 137

Query: 145 FDLDSPNDQQ----NEH---EHEHALSTNSNSKNNTT----------SSSVKKLQRLTSR 204
             L+  ND +    N     E  + +       N TT          S SV+KL+R TS 
Sbjct: 138 VTLNQANDNRIAAVNNRIGGEATNMMMQKGKLPNRTTPFKDTNGYSRSGSVRKLKRYTSG 197

[Close]

BLAST of Csa4G665120 vs. TAIR10
Match: AT1G21010.1 (AT1G21010.1 unknown protein)

HSP 1 Score: 151.0 bits (380), Expect = 8.1e-37
Identity = 87/199 (43.72%), Postives = 121/199 (60.80%), Query Frame = 1


Query: 24  PTAKVISLQGHLREYPVPISVSRVLQTEN-------SSSSTSDSFLCNSDRLFYDDFIPS 83
           PT K++++ G LREY VP+  S+VL+ E+       SSS  S  F+C+SD L+YDDFIP+
Sbjct: 16  PTVKIVTVNGDLREYNVPVIASQVLEAESAAAYSSSSSSRPSSYFICDSDSLYYDDFIPA 75

Query: 84  LPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLALQNASTNNLHLPHNKGRRRR 143
           +  +  L  +QIYF+LP S    RLTA DMAALAVKA++A+Q    N++     + ++ R
Sbjct: 76  IKSEEPLQADQIYFVLPISKRQSRLTASDMAALAVKASVAIQ----NSVKKESRRRKKVR 135

Query: 144 ISPLFDLDSPNDQQNEHEHEHALSTNSNSKNNTT----------SSSVKKLQRLTSRRAK 203
           ISP+  L   ND  N +  E  +       + T           S SV+ L+R TS+RAK
Sbjct: 136 ISPVMMLTGSNDSVNGNGSETTVKKGRPFVSKTAPVKASSGINRSGSVRNLRRYTSKRAK 195

Query: 204 MAVRSFKLRLSTIYEGTVL 206
           +AVRSF+L+LSTIYEG+V+
Sbjct: 196 LAVRSFRLKLSTIYEGSVV 210

[Close]

BLAST of Csa4G665120 vs. TAIR10
Match: AT3G50800.1 (AT3G50800.1 unknown protein)

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-14
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 1


Query: 25  TAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDSFLCNSDRLFYDDFIPSLPLDHQLH 84
           TAK+I   G L+E+  P+ V ++LQ   +S      F+CNSD + +DD + ++P    L 
Sbjct: 14  TAKLILPDGTLQEFSTPVKVWQILQKNPTS------FVCNSDDMDFDDAVLAVPGSEDLR 73

Query: 85  PNQIYFILPSSNLHHRLTAPDMAALAVKATLALQNASTNNL 126
           P ++YF+LP + L+H L A +MAALAVKA+ AL  +    L
Sbjct: 74  PGELYFVLPLTWLNHPLRADEMAALAVKASSALAKSGGGGL 108

[Close]

BLAST of Csa4G665120 vs. TAIR10
Match: AT2G23690.1 (AT2G23690.1 unknown protein)

HSP 1 Score: 75.1 bits (183), Expect = 5.7e-14
Identity = 46/127 (36.22%), Postives = 66/127 (51.97%), Query Frame = 1


Query: 14  VSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDSFLCNSDRLFYDDF 73
           + SS       TAK+I   G + E+  P+ V  VLQ           F+CNSD + +D+ 
Sbjct: 3   ICSSYESTQVATAKLILHDGRMMEFTSPVKVGYVLQKNPMC------FICNSDDMDFDNV 62

Query: 74  IPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLALQNASTNNLHLPHNKGR 133
           + ++  D +    Q+YF LP S+LHH L A +MAALAVKA+ AL   S  +      + R
Sbjct: 63  VSAISADEEFQLGQLYFALPLSSLHHSLKAEEMAALAVKASSALMR-SGGSCGRDKCRCR 122

Query: 134 RRRISPL 141
           R+ +SP+
Sbjct: 123 RKCVSPV 122

[Close]

BLAST of Csa4G665120 vs. TAIR10
Match: AT5G66580.1 (AT5G66580.1 unknown protein)

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-13
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 1


Query: 25  TAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDSFLCNSDRLFYDDFIPSLPLDHQLH 84
           +AK+I L G L+E+  P+ V ++LQ   +S      F+CNSD + +DD + ++  + +L 
Sbjct: 14  SAKLILLDGTLQEFSSPVKVWQILQKNPTS------FVCNSDEMDFDDAVSAVAGNEELR 73

Query: 85  PNQIYFILPSSNLHHRLTAPDMAALAVKATLAL 118
             Q+YF+LP + L+H L A +MAALAVKA+ AL
Sbjct: 74  SGQLYFVLPLTWLNHPLRAEEMAALAVKASSAL 100

[Close]

BLAST of Csa4G665120 vs. NCBI nr
Match: gi|778697315|ref|XP_011654294.1| (PREDICTED: uncharacterized protein LOC101220453 [Cucumis sativus])

HSP 1 Score: 413.3 bits (1061), Expect = 2.5e-112
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1


Query: 1   MGGCFSNCLIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDS 60
           MGGCFSNCLIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDS
Sbjct: 1   MGGCFSNCLIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDS 60

Query: 61  FLCNSDRLFYDDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLALQNA 120
           FLCNSDRLFYDDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLALQNA
Sbjct: 61  FLCNSDRLFYDDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLALQNA 120

Query: 121 STNNLHLPHNKGRRRRISPLFDLDSPNDQQNEHEHEHALSTNSNSKNNTTSSSVKKLQRL 180
           STNNLHLPHNKGRRRRISPLFDLDSPNDQQNEHEHEHALSTNSNSKNNTTSSSVKKLQRL
Sbjct: 121 STNNLHLPHNKGRRRRISPLFDLDSPNDQQNEHEHEHALSTNSNSKNNTTSSSVKKLQRL 180

Query: 181 TSRRAKMAVRSFKLRLSTIYEGTVL 206
           TSRRAKMAVRSFKLRLSTIYEGTVL
Sbjct: 181 TSRRAKMAVRSFKLRLSTIYEGTVL 205

[Close]

BLAST of Csa4G665120 vs. NCBI nr
Match: gi|659105228|ref|XP_008453039.1| (PREDICTED: uncharacterized protein LOC103493864 [Cucumis melo])

HSP 1 Score: 384.8 bits (987), Expect = 9.5e-104
Identity = 196/209 (93.78%), Postives = 200/209 (95.69%), Query Frame = 1


Query: 1   MGGCFSNCLIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDS 60
           MGGC SNCLIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDS
Sbjct: 1   MGGCLSNCLIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDS 60

Query: 61  FLCNSDRLFYDDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLALQNA 120
           FLCNSDRL++DDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLALQNA
Sbjct: 61  FLCNSDRLYFDDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLALQNA 120

Query: 121 STNNL---HLPHNKGRRRRISPLFDLDSPNDQQNEHEHEHALSTNSNSKNNT-TSSSVKK 180
           STNNL   HLP NKGRR RISPLFDLDSPNDQQ+EHEHEHALS NSNSKNNT +SSSVKK
Sbjct: 121 STNNLHLSHLPRNKGRRHRISPLFDLDSPNDQQHEHEHEHALSINSNSKNNTASSSSVKK 180

Query: 181 LQRLTSRRAKMAVRSFKLRLSTIYEGTVL 206
           LQRLTSRRAKMAVRSFKLRLSTIYEGT L
Sbjct: 181 LQRLTSRRAKMAVRSFKLRLSTIYEGTDL 209

[Close]

BLAST of Csa4G665120 vs. NCBI nr
Match: gi|590597514|ref|XP_007018632.1| (Poly polymerase 1, putative [Theobroma cacao])

HSP 1 Score: 181.0 bits (458), Expect = 2.1e-42
Identity = 103/213 (48.36%), Postives = 144/213 (67.61%), Query Frame = 1


Query: 1   MGGCFSNCLIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDS 60
           MG CFS    +   ++      PPTA+V+SL G L +Y +P+ VS+VLQ E ++SS+S S
Sbjct: 1   MGTCFS----LNSRTALSESAAPPTAQVVSLNGDLHKYNIPVLVSQVLQAEAAASSSSSS 60

Query: 61  -------FLCNSDRLFYDDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKA 120
                  FLCNSDRL+YDD+IP+L +DHQL  NQIYF+LP+S L  RLT+ DMAALAVKA
Sbjct: 61  SLPSSAIFLCNSDRLYYDDYIPALDIDHQLQANQIYFVLPNSKLQQRLTSKDMAALAVKA 120

Query: 121 TLALQNASTNNLHLPHNKGRRRRISPLFDLDSPNDQQNEHEHEHALSTNSNSKNN-TTSS 180
           ++A+QN+S N  H    + ++ RISP+  +       ++ +   A  + +  +   + S+
Sbjct: 121 SVAIQNSSKNESH----RRKKARISPVLLVAQSLPVVDKDDAPTAPKSFAEPRPRLSRSA 180

Query: 181 SVKKLQRLTSRRAKMAVRSFKLRLSTIYEGTVL 206
           S++KL R TSRRAK+AVRSF+LRLSTIYEG+VL
Sbjct: 181 SIRKLHRYTSRRAKLAVRSFRLRLSTIYEGSVL 205

[Close]

BLAST of Csa4G665120 vs. NCBI nr
Match: gi|224083398|ref|XP_002307010.1| (hypothetical protein POPTR_0005s28050g [Populus trichocarpa])

HSP 1 Score: 180.6 bits (457), Expect = 2.7e-42
Identity = 110/223 (49.33%), Postives = 144/223 (64.57%), Query Frame = 1


Query: 1   MGGCFSNCLIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDS 60
           MGGCFS+  +            P TAKVIS+ G LREY +P  VS+VLQ E +SSS+S S
Sbjct: 1   MGGCFSSSFL----GEDSEQVRPQTAKVISIHGDLREYYLPAFVSQVLQAEIASSSSSSS 60

Query: 61  ----FLCNSDRLFYDDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLA 120
               FLCNSD L YD++IP+L  D  LH +QIYF+LP S L HRLT+ DMAALAVKA+LA
Sbjct: 61  SSSWFLCNSDLLLYDEYIPALDSDVPLHADQIYFVLPKSKLQHRLTSSDMAALAVKASLA 120

Query: 121 LQNASTNNLHLPHNKGRRRRISPLFDLDSPNDQQNEHEHEHALSTNSNSKNN-------- 180
           LQN+S  +      +G++ RISP+  L +P+   +EH+ ++ +  + + K          
Sbjct: 121 LQNSSNKD----PRRGKKARISPVL-LVNPD---HEHQGQNVVKVSFDRKPKPQVQQRQP 180

Query: 181 ------TTSSSVKKLQRLTSRRAKMAVRSFKLRLSTIYEGTVL 206
                 + S SV+K Q+ TSRRAK+AVRSFKLRL+TIYEGTVL
Sbjct: 181 ANPIVFSRSGSVRKFQKYTSRRAKLAVRSFKLRLTTIYEGTVL 211

[Close]

BLAST of Csa4G665120 vs. NCBI nr
Match: gi|595859772|ref|XP_007211011.1| (hypothetical protein PRUPE_ppa020532mg [Prunus persica])

HSP 1 Score: 179.1 bits (453), Expect = 7.9e-42
Identity = 110/225 (48.89%), Postives = 147/225 (65.33%), Query Frame = 1


Query: 1   MGGCFSNCLIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVL---QTENSSSST 60
           MGGC S+  +I    +       PTAKVIS+ G LREYPVP+ VS+VL   QT +SSSS+
Sbjct: 1   MGGCVSS--VIRSSHNEELLLNSPTAKVISINGSLREYPVPVIVSQVLEAGQTASSSSSS 60

Query: 61  SDSFLCNSDRLFYDDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLAL 120
           S SFLCNSDRL+YD++IP L  + +L  +QIYFILP S L HRL+A DMAALAV+A+LA 
Sbjct: 61  SSSFLCNSDRLYYDNYIPVLDSEDELEADQIYFILPRSKLEHRLSATDMAALAVRASLAF 120

Query: 121 QNASTN-----------NLHLPHNKGRRRRISPLFDLDSPNDQQNEHEHEHALSTN---- 180
           Q+AS++           +LH P    ++ R+SP+    + +D   +  +E  +  +    
Sbjct: 121 QDASSSSSSYKTKEKKKDLH-PRRNYKKARVSPVLINYANSDMDRDDFNEITIGDSAYKG 180

Query: 181 --SNSKNNTTSSSVKKLQRLTSRRAKMAVRSFKLRLSTIYEGTVL 206
             S  +  + S SVKKLQR TS+RAKMAVRSF+LRL+TI EG+VL
Sbjct: 181 QMSQKQQISRSKSVKKLQRYTSKRAKMAVRSFRLRLTTIDEGSVL 222

The following BLAST results are available for this feature:

BLAST of Csa4G665120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5Z9_CUCSA	1.7e-112	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G665120 PE=4 SV=1	[more]
A0A061FGL4_THECC	1.4e-42	48.36	Poly polymerase 1, putative OS=Theobroma cacao GN=TCM_034801 PE=4 SV=1	[more]
B9H5Y6_POPTR	1.9e-42	49.33	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s28050g PE=4 SV=1	[more]
M5WZG0_PRUPE	5.5e-42	48.89	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020532mg PE=4 SV=1	[more]
B9R8V8_RICCO	7.9e-41	48.64	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1602490 PE=4 SV=1	[more]

BLAST of Csa4G665120 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76600.1	6.6e-39	47.00	unknown protein	[more]
AT1G21010.1	8.1e-37	43.72	unknown protein	[more]
AT3G50800.1	3.3e-14	40.59	unknown protein	[more]
AT2G23690.1	5.7e-14	36.22	unknown protein	[more]
AT5G66580.1	2.1e-13	41.94	unknown protein	[more]

BLAST of Csa4G665120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697315\|ref\|XP_011654294.1\|	2.5e-112	100.00	PREDICTED: uncharacterized protein LOC101220453 [Cucumis sativus]	[more]
gi\|659105228\|ref\|XP_008453039.1\|	9.5e-104	93.78	PREDICTED: uncharacterized protein LOC103493864 [Cucumis melo]	[more]
gi\|590597514\|ref\|XP_007018632.1\|	2.1e-42	48.36	Poly polymerase 1, putative [Theobroma cacao]	[more]
gi\|224083398\|ref\|XP_002307010.1\|	2.7e-42	49.33	hypothetical protein POPTR_0005s28050g [Populus trichocarpa]	[more]
gi\|595859772\|ref\|XP_007211011.1\|	7.9e-42	48.89	hypothetical protein PRUPE_ppa020532mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025322	DUF4228_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042546	cell wall biogenesis
biological_process	GO:0045489	pectin biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005794	Golgi apparatus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0048531	beta-1,3-galactosyltransferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU102537	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G665120.1	Csa4G665120.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU102537	CU102537	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 15..201 score: 1.5
None	No IPR available	PANTHER	PTHR33052	FAMILY NOT NAMED	coord: 2..205 score: 2.1
None	No IPR available	PANTHER	PTHR33052:SF15	SUBFAMILY NOT NAMED	coord: 2..205 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G665120	Cla000519	Watermelon (97103) v1	cuwmB284
Csa4G665120	MELO3C017072	Melon (DHL92) v3.5.1	cumeB313
Csa4G665120	ClCG11G019190	Watermelon (Charleston Gray)	cuwcgB280
Csa4G665120	Lsi04G024390	Bottle gourd (USVL1VR-Ls)	culsiB286
Csa4G665120	MELO3C017072.2	Melon (DHL92) v3.6.1	cumedB298
Csa4G665120	Cla97C11G225330	Watermelon (97103) v2	cuwmbB280
Csa4G665120	Bhi09G002327	Wax gourd	cuwgoB416
Csa4G665120	CSPI04G27400	Wild cucumber (PI 183967)	cpicuB181
Csa4G665120	Cucsa.272560	Cucumber (Gy14) v1	cgycuB387
Csa4G665120	CmaCh01G020540	Cucurbita maxima (Rimu)	cmacuB464
Csa4G665120	CmoCh01G021100	Cucurbita moschata (Rifu)	cmocuB452
Csa4G665120	Cp4.1LG02g08650	Cucurbita pepo (Zucchini)	cpecuB572
Csa4G665120	CsGy4G025710	Cucumber (Gy14) v2	cgybcuB166
Csa4G665120	Carg21337	Silver-seed gourd	carcuB0388

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G665120	Watermelon (97103) v2	cuwmbB281
Csa4G665120	Wax gourd	cuwgoB419
Csa4G665120	Cucurbita maxima (Rimu)	cmacuB024
Csa4G665120	Cucurbita moschata (Rifu)	cmocuB015
Csa4G665120	Cucurbita moschata (Rifu)	cmocuB469
Csa4G665120	Watermelon (97103) v1	cuwmB352
Csa4G665120	Cucurbita pepo (Zucchini)	cpecuB013
Csa4G665120	Cucurbita pepo (Zucchini)	cpecuB571
Csa4G665120	Cucurbita pepo (Zucchini)	cpecuB790
Csa4G665120	Silver-seed gourd	carcuB0113
Csa4G665120	Silver-seed gourd	carcuB1061