CU102537 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU102537
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionChaperone protein dnaJ 10
LocationChr4 : 23216830 .. 23262939 (-)
Sequence length680
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GGAAGGTCAACCAATGGAAATGAGGGTGGAACCGGCAGTAAAAGGACTCAGTAGACAAACTGAATGGAAGTGAATCAAGTCATGATGCTTCCCCAATTTCAACATTGAAATCTTCCGGCTATGAAGAAACATCTTTTGCAACACAGAGTCCCTATGTGGAGGCTCCCAATTTTGCAGGTGCACACTTAAATAACTATTTCCCCAGGCCAACACCCCCTCCAGGTGCACAGAGACATCCGTCCTCCAGCAGGGATTGAGCGGGTTTGTATGTATCGTGTAGGATATTGTCTTGTATTTATGGCTATAGATATGGTTGTATGTGTGGATAATCTTGCTTAAAGCAGCTGCCATTCCTATACTCGGGGGGATGTGTGTCGTGGATTTGTATTTAACAGAACAGACTAATGGCTGTAGTCGGAACTTTTCATCATTTTGGTTGGCGGCTGTGTTCACTGTTGGCCGCTTGGTGGTGAATCTCGAACCCTTTATTACATTGGATTATATTTTCGTTTCACCAGTCGGTCACCGCGTGCCACTTTCATTCATTGTAAGCTCTTTCAGGGTAAAAAATCTTTTATAAATAATTCTTTTAAATGTGTCTGGACTTGGGGCCGGGACTTGGACCGGGACCTGGACCTGGACCTGGACCACACCATTTCTTAATTGATCCAGGTATAGGT
Homology
[Close]
BLAST of CU102537 vs. Swiss-Prot
Match: DNJ10_ARATH (Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-06
Identity = 32/72 (44.44%), Postives = 37/72 (51.39%), Query Frame = 3 

Query: 57  KLNGSESSHDASPISTLKSSGYEETSFAT------QSPYVEAPNFAGAHLNNYFPRPTPP 116
           KLNG+  +HD    ++ KSS   E S +T      QSPYVE         N YFPRP PP
Sbjct: 330 KLNGNGKNHDEDTSTSPKSS---EASHSTSGPQEPQSPYVEEFKLGDEQFNYYFPRPAPP 389

Query: 117 PGAQRHPSSSRD 176
           PGA ++ SS  D
Sbjct: 390 PGAGKYSSSGYD 398

Query: 177  236
           
Sbjct: 450  398

Query: 237  255
           
Sbjct: 510  398

[Close]
BLAST of CU102537 vs. TrEMBL
Match: A0A0A0L602_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G665650 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.9e-32
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 3 

Query: 42  KDSVDKLNGSESSHDASPISTLKSSGYEETSFATQSPYVEAPNFAGAHLNNYFPRPTPPP 101
           K SVDKLNGSESSHDASPISTLKSSGYEETSFATQSPYVEAPNFAGAHLNNYFPRPTPPP
Sbjct: 328 KGSVDKLNGSESSHDASPISTLKSSGYEETSFATQSPYVEAPNFAGAHLNNYFPRPTPPP 387

Query: 102 GAQRHPSSSRD 161
           GAQRHPSSSRD
Sbjct: 388 GAQRHPSSSRD 398

Query: 162  221
           
Sbjct: 448  398

Query: 222  255
           
Sbjct: 508  398

[Close]
BLAST of CU102537 vs. TrEMBL
Match: A0A0A0L0V1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G665400 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.1e-31
Identity = 72/81 (88.89%), Postives = 72/81 (88.89%), Query Frame = 2 

Query: 368 MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 427
           MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI
Sbjct: 1   MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 60

Query: 428 VSSFRVKXXXXXXXXXVSGLG 487
           VSSFRVK         VSGLG
Sbjct: 61  VSSFRVKKSFINNSLNVSGLG 81

Query: 488  547
           
Sbjct: 121  81

Query: 548  607
           
Sbjct: 181  81

Query: 608  611
           
Sbjct: 241  81

[Close]
BLAST of CU102537 vs. TrEMBL
Match: V7CIR8_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G055000g PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.5e-12
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 3 

Query: 48  SVDKLNGSESSHDA-SPISTLKSSGYE---ETSFATQSPYVEAPNFAGAHLNNYFPRPTP 107
           +V KLNGSE+S+DA SP ++ KSS  E   + SFA+QSPYVEAP+FAG   +  FPRPT 
Sbjct: 283 AVHKLNGSETSNDACSPSTSPKSSSPEFSSDASFASQSPYVEAPHFAGMQFDYNFPRPTA 342

Query: 108 PPGAQRHPSSSRD 167
           PPGAQR  ++S+D
Sbjct: 343 PPGAQRPTTTSKD 355

Query: 168  227
           
Sbjct: 403  355

Query: 228  255
           
Sbjct: 463  355

[Close]
BLAST of CU102537 vs. TrEMBL
Match: M5VQ36_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006574mg PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.5e-12
Identity = 43/72 (59.72%), Postives = 50/72 (69.44%), Query Frame = 3 

Query: 60  LNGSESSHDA-SPISTLKSSGYEETSFA------TQSPYVEAPNFAGAHLNNYFPRPTPP 119
           LNGSES +DA SPI+T K+S  EE S+       +QSPYVEAP  AGA  + +FPRPT P
Sbjct: 334 LNGSESRYDACSPITTPKASNPEEPSYTVFASQVSQSPYVEAPQIAGAQFDYHFPRPTAP 393

Query: 120 PGAQRHPSSSRD 179
           PGAQRH S  RD
Sbjct: 394 PGAQRHSSIGRD 405

Query: 180  239
           
Sbjct: 454  405

Query: 240  255
           
Sbjct: 514  405

[Close]
BLAST of CU102537 vs. TrEMBL
Match: A0A0L9T7V2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan303s007500 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 3 

Query: 48  SVDKLNGSESSHDA-SPISTLKSSGYE---ETSFATQSPYVEAPNFAGAHLNNYFPRPTP 107
           +V KLNGSE+S+DA SP ++ KSS  +   +TSFA+QSPYVEAP+FAG   +  FPRPT 
Sbjct: 330 AVHKLNGSETSNDACSPCTSPKSSSPDFSSDTSFASQSPYVEAPHFAGMQFDYNFPRPTA 389

Query: 108 PPGAQRHPSSSRD 167
           PPGAQR   +++D
Sbjct: 390 PPGAQRPTPTTKD 402

Query: 168  227
           
Sbjct: 450  402

Query: 228  255
           
Sbjct: 510  402

[Close]
BLAST of CU102537 vs. NCBI nr
Match: gi|700200402|gb|KGN55560.1| (hypothetical protein Csa_4G665400 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 2.4e-31
Identity = 72/81 (88.89%), Postives = 72/81 (88.89%), Query Frame = 2 

Query: 368 MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 427
           MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI
Sbjct: 1   MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 60

Query: 428 VSSFRVKXXXXXXXXXVSGLG 487
           VSSFRVK         VSGLG
Sbjct: 61  VSSFRVKKSFINNSLNVSGLG 81

Query: 488  547
           
Sbjct: 121  81

Query: 548  607
           
Sbjct: 181  81

Query: 608  611
           
Sbjct: 241  81

[Close]
BLAST of CU102537 vs. NCBI nr
Match: gi|778697326|ref|XP_011654296.1| (PREDICTED: chaperone protein dnaJ 10-like isoform X1 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 3.1e-31
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 3 

Query: 42  KDSVDKLNGSESSHDASPISTLKSSGYEETSFATQSPYVEAPNFAGAHLNNYFPRPTPPP 101
           K SVDKLNGSESSHDASPISTLKSSGYEETSFATQSPYVEAPNFAGAHLNNYFPRPTPPP
Sbjct: 333 KGSVDKLNGSESSHDASPISTLKSSGYEETSFATQSPYVEAPNFAGAHLNNYFPRPTPPP 392

Query: 102 GAQRHPSSSRD 161
           GAQRHPSSSRD
Sbjct: 393 GAQRHPSSSRD 403

Query: 162  221
           
Sbjct: 453  403

Query: 222  255
           
Sbjct: 513  403

[Close]
BLAST of CU102537 vs. NCBI nr
Match: gi|778697333|ref|XP_011654298.1| (PREDICTED: chaperone protein dnaJ 10-like isoform X2 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 3.1e-31
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 3 

Query: 42  KDSVDKLNGSESSHDASPISTLKSSGYEETSFATQSPYVEAPNFAGAHLNNYFPRPTPPP 101
           K SVDKLNGSESSHDASPISTLKSSGYEETSFATQSPYVEAPNFAGAHLNNYFPRPTPPP
Sbjct: 328 KGSVDKLNGSESSHDASPISTLKSSGYEETSFATQSPYVEAPNFAGAHLNNYFPRPTPPP 387

Query: 102 GAQRHPSSSRD 161
           GAQRHPSSSRD
Sbjct: 388 GAQRHPSSSRD 398

Query: 162  221
           
Sbjct: 448  398

Query: 222  255
           
Sbjct: 508  398

[Close]
BLAST of CU102537 vs. NCBI nr
Match: gi|659105241|ref|XP_008453046.1| (PREDICTED: chaperone protein dnaJ 10 isoform X2 [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 1.2e-30
Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 3 

Query: 42  KDSVDKLNGSESSHDASPISTLKSSGYEETSFATQSPYVEAPNFAGAHLNNYFPRPTPPP 101
           K SVDKLNGSESSHDASPISTLKSSGYEETSF TQSPYVEAPNFAGAHLNNYFPRPTPPP
Sbjct: 336 KGSVDKLNGSESSHDASPISTLKSSGYEETSFPTQSPYVEAPNFAGAHLNNYFPRPTPPP 395

Query: 102 GAQRHPSSSRD 161
           GAQRHPSSSRD
Sbjct: 396 GAQRHPSSSRD 406

Query: 162  221
           
Sbjct: 456  406

Query: 222  255
           
Sbjct: 516  406

[Close]
BLAST of CU102537 vs. NCBI nr
Match: gi|659105239|ref|XP_008453045.1| (PREDICTED: chaperone protein dnaJ 10 isoform X1 [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 1.2e-30
Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 3 

Query: 42  KDSVDKLNGSESSHDASPISTLKSSGYEETSFATQSPYVEAPNFAGAHLNNYFPRPTPPP 101
           K SVDKLNGSESSHDASPISTLKSSGYEETSF TQSPYVEAPNFAGAHLNNYFPRPTPPP
Sbjct: 341 KGSVDKLNGSESSHDASPISTLKSSGYEETSFPTQSPYVEAPNFAGAHLNNYFPRPTPPP 400

Query: 102 GAQRHPSSSRD 161
           GAQRHPSSSRD
Sbjct: 401 GAQRHPSSSRD 411

Query: 162  221
           
Sbjct: 461  411

Query: 222  255
           
Sbjct: 521  411

The following BLAST results are available for this feature:
BLAST of CU102537 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DNJ10_ARATH1.2e-0644.44Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=2[more]
BLAST of CU102537 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L602_CUCSA1.9e-3298.59Uncharacterized protein OS=Cucumis sativus GN=Csa_4G665650 PE=4 SV=1[more]
A0A0A0L0V1_CUCSA2.1e-3188.89Uncharacterized protein OS=Cucumis sativus GN=Csa_4G665400 PE=4 SV=1[more]
V7CIR8_PHAVU6.5e-1258.90Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G055000g PE... [more]
M5VQ36_PRUPE6.5e-1259.72Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006574mg PE=4 SV=1[more]
A0A0L9T7V2_PHAAN1.1e-1157.53Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan303s007500 PE=4 SV=1[more]
BLAST of CU102537 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200402|gb|KGN55560.1|2.4e-3188.89hypothetical protein Csa_4G665400 [Cucumis sativus][more]
gi|778697326|ref|XP_011654296.1|3.1e-3198.59PREDICTED: chaperone protein dnaJ 10-like isoform X1 [Cucumis sativus][more]
gi|778697333|ref|XP_011654298.1|3.1e-3198.59PREDICTED: chaperone protein dnaJ 10-like isoform X2 [Cucumis sativus][more]
gi|659105241|ref|XP_008453046.1|1.2e-3097.18PREDICTED: chaperone protein dnaJ 10 isoform X2 [Cucumis melo][more]
gi|659105239|ref|XP_008453045.1|1.2e-3097.18PREDICTED: chaperone protein dnaJ 10 isoform X1 [Cucumis melo][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G665130Csa4G665130gene
Csa4G665140Csa4G665140gene
Csa4G665150Csa4G665150gene
Csa4G665650Csa4G665650gene
Csa4G665090Csa4G665090gene
Csa4G664590Csa4G664590gene
Csa4G665120Csa4G665120gene
Csa4G665110Csa4G665110gene
Csa4G665100Csa4G665100gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02LJZ1RFKNP3UI02LJZ1REST
FKNP3UI02LVB42FKNP3UI02LVB42EST
FKNP3UI02M5NV3FKNP3UI02M5NV3EST
FKNP3UI02MZH9TFKNP3UI02MZH9TEST
FKNP3UI02N7Y6ZFKNP3UI02N7Y6ZEST
G0009228G0009228EST
G0020790G0020790EST
G0024283G0024283EST
G0030907G0030907EST
G0037829G0037829EST
G0039614G0039614EST
G0057385G0057385EST
G0079354G0079354EST
G0112034G0112034EST
G0113592G0113592EST
G0147707G0147707EST
G0150221G0150221EST
G0157886G0157886EST
G0194752G0194752EST
H0026436H0026436EST
H0027222H0027222EST
H0043842H0043842EST
H0058378H0058378EST
H0063366H0063366EST
H0075007H0075007EST
H0084215H0084215EST
H0163323H0163323EST
H0168075H0168075EST
H0176272H0176272EST