Csa4G639170 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G639170
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 21086997 .. 21087455 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCAACGAAATAGGCATAAGAGTCAAGAAAGGGAGAGTGTGAACTCAGAAGGAGGAATCGCCGCTTGGAATGTGTTTGACAGTGTGAAGACCACAACGAAGACTCCTGAAGCTCTAATGGGGGAGATCGGTGCTGCAATTTCAAATTTAGAATATGCTCGAACCACTGCGTATTTAGAATCTCCAATATCTCCCGATGAGCCAGAGGATGAGGAACCTAGTGCGAATTCAAGAAGTCAGTATGATGTTCGAATGGCGGATGGAGCTTACAAGGCAGGTTGTAAAGCATTAACCGTTGGTAAGCTTGACGAGGCTCTTCATTCGTTGAATGTTTCTCTTTCGAAATGCCCACCTGAGAAATCATCTGCTGTTGCTAAGATTCAATCTTTGATCTCCCTCACGTCTCAGCAACTTCAGATCAGATCTTCTAATTGCCAAGAAATTTCAGAAGATTGA

mRNA sequence

ATGCCTCAACGAAATAGGCATAAGAGTCAAGAAAGGGAGAGTGTGAACTCAGAAGGAGGAATCGCCGCTTGGAATGTGTTTGACAGTGTGAAGACCACAACGAAGACTCCTGAAGCTCTAATGGGGGAGATCGGTGCTGCAATTTCAAATTTAGAATATGCTCGAACCACTGCGTATTTAGAATCTCCAATATCTCCCGATGAGCCAGAGGATGAGGAACCTAGTGCGAATTCAAGAAGTCAGTATGATGTTCGAATGGCGGATGGAGCTTACAAGGCAGGTTGTAAAGCATTAACCGTTGGTAAGCTTGACGAGGCTCTTCATTCGTTGAATGTTTCTCTTTCGAAATGCCCACCTGAGAAATCATCTGCTGTTGCTAAGATTCAATCTTTGATCTCCCTCACGTCTCAGCAACTTCAGATCAGATCTTCTAATTGCCAAGAAATTTCAGAAGATTGA

Coding sequence (CDS)

ATGCCTCAACGAAATAGGCATAAGAGTCAAGAAAGGGAGAGTGTGAACTCAGAAGGAGGAATCGCCGCTTGGAATGTGTTTGACAGTGTGAAGACCACAACGAAGACTCCTGAAGCTCTAATGGGGGAGATCGGTGCTGCAATTTCAAATTTAGAATATGCTCGAACCACTGCGTATTTAGAATCTCCAATATCTCCCGATGAGCCAGAGGATGAGGAACCTAGTGCGAATTCAAGAAGTCAGTATGATGTTCGAATGGCGGATGGAGCTTACAAGGCAGGTTGTAAAGCATTAACCGTTGGTAAGCTTGACGAGGCTCTTCATTCGTTGAATGTTTCTCTTTCGAAATGCCCACCTGAGAAATCATCTGCTGTTGCTAAGATTCAATCTTTGATCTCCCTCACGTCTCAGCAACTTCAGATCAGATCTTCTAATTGCCAAGAAATTTCAGAAGATTGA

Protein sequence

MPQRNRHKSQERESVNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAYLESPISPDEPEDEEPSANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPPEKSSAVAKIQSLISLTSQQLQIRSSNCQEISED*

Homology

[Close]

BLAST of Csa4G639170 vs. TrEMBL
Match: A0A0A0L090_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639170 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.2e-78
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 1   MPQRNRHKSQERESVNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAYL 60
           MPQRNRHKSQERESVNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAYL
Sbjct: 1   MPQRNRHKSQERESVNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAYL 60

Query: 61  ESPISPDEPEDEEPSANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPPE 120
           ESPISPDEPEDEEPSANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPPE
Sbjct: 61  ESPISPDEPEDEEPSANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPPE 120

Query: 121 KSSAVAKIQSLISLTSQQLQIRSSNCQEISED 153
           KSSAVAKIQSLISLTSQQLQIRSSNCQEISED
Sbjct: 121 KSSAVAKIQSLISLTSQQLQIRSSNCQEISED 152

[Close]

BLAST of Csa4G639170 vs. TrEMBL
Match: W9R081_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003372 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.2e-37
Identity = 91/156 (58.33%), Postives = 111/156 (71.15%), Query Frame = 1


Query: 2   PQRNRHKSQERESVNSEGGIAA----------WNVFDSVKTTTKTPEALMGEIGAAISNL 61
           PQ ++ +   RE V++    +A          WNVFD VK+   TPEALM EI +AISNL
Sbjct: 13  PQDSQAQQPTREMVSAPSPTSASAQGMKIKPRWNVFDGVKSIPATPEALMAEIDSAISNL 72

Query: 62  EYARTTAYLESPISPDEPEDEEPSA--NSRSQYDVRMADGAYKAGCKALTVGKLDEALHS 121
           E AR TA L+SP +   P  ++ S+  NS +QYDVRMAD A+KAGC AL  GKLDEALH+
Sbjct: 73  ELARATALLQSPSASSSPSGKKKSSDGNSTAQYDVRMADEAFKAGCSALAAGKLDEALHA 132

Query: 122 LNVSLSKCPPEKSSAVAKIQSLISLTSQQLQIRSSN 146
           LNVSLSKCPP+K+SAVAK++SLISLTSQQLQ RS N
Sbjct: 133 LNVSLSKCPPDKTSAVAKLRSLISLTSQQLQ-RSGN 167

[Close]

BLAST of Csa4G639170 vs. TrEMBL
Match: A0A067KTS2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04298 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.6e-36
Identity = 82/126 (65.08%), Postives = 96/126 (76.19%), Query Frame = 1


Query: 15  VNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAYLESPISPDEPEDEEP 74
           + SE G   W+VFD +KT   TP+ALM +I   I+NLEYAR TA L+SP SP   + E P
Sbjct: 1   MGSEEGSPHWSVFDEIKTIPPTPDALMAKIDTGITNLEYARATAVLDSP-SPSHLKSEIP 60

Query: 75  SANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPPEKSSAVAKIQSLISL 134
           +  +  +YD RMAD AYKAGC AL  GKLDEALHSLNVSLSKCPP+K+SAVAK+QSLISL
Sbjct: 61  NGGATPRYDARMADEAYKAGCAALAAGKLDEALHSLNVSLSKCPPDKTSAVAKLQSLISL 120

Query: 135 TSQQLQ 141
           TSQQLQ
Sbjct: 121 TSQQLQ 125

[Close]

BLAST of Csa4G639170 vs. TrEMBL
Match: B9R7F4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1591250 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.0e-33
Identity = 78/127 (61.42%), Postives = 94/127 (74.02%), Query Frame = 1


Query: 15  VNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAYLESPI-SPDEPEDEE 74
           ++SE G  AW+VFD +K    TPEALM EI  AI+NLEYAR TA L+    SP     + 
Sbjct: 1   MSSEEGKTAWSVFDGIKKIPPTPEALMAEIDTAITNLEYARATALLDPQSQSPTHSRTKS 60

Query: 75  PSANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPPEKSSAVAKIQSLIS 134
            + +S S+YD RMAD AY+AGC AL  GKLDEA  SLN+SLSKCPP+K+SAVAK+QSLIS
Sbjct: 61  LNGSSASRYDARMADEAYRAGCAALAAGKLDEAFQSLNISLSKCPPDKTSAVAKLQSLIS 120

Query: 135 LTSQQLQ 141
           LT+QQLQ
Sbjct: 121 LTAQQLQ 127

[Close]

BLAST of Csa4G639170 vs. TrEMBL
Match: A0A0D2SL34_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G018000 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-32
Identity = 82/132 (62.12%), Postives = 97/132 (73.48%), Query Frame = 1


Query: 8   KSQERESVNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAYLESPISPD 67
           K  + + + S  G   ++VFD VKT + TPEALM +I  AI+NLEYAR TA+L+SP S  
Sbjct: 9   KYLKTKQMGSGEGNPHFSVFDGVKTFSLTPEALMADINTAITNLEYARATAFLDSPSSS- 68

Query: 68  EPEDEEPSANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPPEKSSAVAK 127
                  S +S S+YD +MAD AYKAGC AL  GKLDEA HSLNVSLSKCPPEK+SAVAK
Sbjct: 69  --LSRNKSCDS-SEYDAQMADQAYKAGCAALAAGKLDEAFHSLNVSLSKCPPEKASAVAK 128

Query: 128 IQSLISLTSQQL 140
           +QSLISLTSQQL
Sbjct: 129 LQSLISLTSQQL 136

[Close]

BLAST of Csa4G639170 vs. NCBI nr
Match: gi|778696086|ref|XP_011654103.1| (PREDICTED: uncharacterized protein LOC101212714 [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 1.7e-78
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 1   MPQRNRHKSQERESVNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAYL 60
           MPQRNRHKSQERESVNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAYL
Sbjct: 1   MPQRNRHKSQERESVNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAYL 60

Query: 61  ESPISPDEPEDEEPSANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPPE 120
           ESPISPDEPEDEEPSANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPPE
Sbjct: 61  ESPISPDEPEDEEPSANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPPE 120

Query: 121 KSSAVAKIQSLISLTSQQLQIRSSNCQEISED 153
           KSSAVAKIQSLISLTSQQLQIRSSNCQEISED
Sbjct: 121 KSSAVAKIQSLISLTSQQLQIRSSNCQEISED 152

[Close]

BLAST of Csa4G639170 vs. NCBI nr
Match: gi|659103229|ref|XP_008452533.1| (PREDICTED: uncharacterized protein LOC103493531 [Cucumis melo])

HSP 1 Score: 263.1 bits (671), Expect = 3.1e-67
Identity = 136/152 (89.47%), Postives = 140/152 (92.11%), Query Frame = 1


Query: 1   MPQRNRHKSQERESVNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAYL 60
           M QRN HKSQ RESVNSEGGI  WNVFD+VKTTTKTPEALM EI AAISNLEY RT AYL
Sbjct: 1   MHQRNWHKSQGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAYL 60

Query: 61  ESPISPDEPEDEEPSANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPPE 120
           ESPISP   EDEEPSANSRSQYDVR+ADGAYKAGCKALT+GKLDEALHSLNVSLSKCPPE
Sbjct: 61  ESPISP---EDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPE 120

Query: 121 KSSAVAKIQSLISLTSQQLQIRSSNCQEISED 153
           KSSAVAKIQSLISLTSQQ+QIRSSNCQEISED
Sbjct: 121 KSSAVAKIQSLISLTSQQIQIRSSNCQEISED 149

[Close]

BLAST of Csa4G639170 vs. NCBI nr
Match: gi|703082885|ref|XP_010092068.1| (hypothetical protein L484_003372 [Morus notabilis])

HSP 1 Score: 162.2 bits (409), Expect = 7.4e-37
Identity = 91/156 (58.33%), Postives = 111/156 (71.15%), Query Frame = 1


Query: 2   PQRNRHKSQERESVNSEGGIAA----------WNVFDSVKTTTKTPEALMGEIGAAISNL 61
           PQ ++ +   RE V++    +A          WNVFD VK+   TPEALM EI +AISNL
Sbjct: 13  PQDSQAQQPTREMVSAPSPTSASAQGMKIKPRWNVFDGVKSIPATPEALMAEIDSAISNL 72

Query: 62  EYARTTAYLESPISPDEPEDEEPSA--NSRSQYDVRMADGAYKAGCKALTVGKLDEALHS 121
           E AR TA L+SP +   P  ++ S+  NS +QYDVRMAD A+KAGC AL  GKLDEALH+
Sbjct: 73  ELARATALLQSPSASSSPSGKKKSSDGNSTAQYDVRMADEAFKAGCSALAAGKLDEALHA 132

Query: 122 LNVSLSKCPPEKSSAVAKIQSLISLTSQQLQIRSSN 146
           LNVSLSKCPP+K+SAVAK++SLISLTSQQLQ RS N
Sbjct: 133 LNVSLSKCPPDKTSAVAKLRSLISLTSQQLQ-RSGN 167

[Close]

BLAST of Csa4G639170 vs. NCBI nr
Match: gi|643731035|gb|KDP38373.1| (hypothetical protein JCGZ_04298 [Jatropha curcas])

HSP 1 Score: 159.8 bits (403), Expect = 3.7e-36
Identity = 82/126 (65.08%), Postives = 96/126 (76.19%), Query Frame = 1


Query: 15  VNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAYLESPISPDEPEDEEP 74
           + SE G   W+VFD +KT   TP+ALM +I   I+NLEYAR TA L+SP SP   + E P
Sbjct: 1   MGSEEGSPHWSVFDEIKTIPPTPDALMAKIDTGITNLEYARATAVLDSP-SPSHLKSEIP 60

Query: 75  SANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPPEKSSAVAKIQSLISL 134
           +  +  +YD RMAD AYKAGC AL  GKLDEALHSLNVSLSKCPP+K+SAVAK+QSLISL
Sbjct: 61  NGGATPRYDARMADEAYKAGCAALAAGKLDEALHSLNVSLSKCPPDKTSAVAKLQSLISL 120

Query: 135 TSQQLQ 141
           TSQQLQ
Sbjct: 121 TSQQLQ 125

[Close]

BLAST of Csa4G639170 vs. NCBI nr
Match: gi|1000986092|ref|XP_015573765.1| (PREDICTED: uncharacterized protein LOC8278900 [Ricinus communis])

HSP 1 Score: 150.2 bits (378), Expect = 2.9e-33
Identity = 78/127 (61.42%), Postives = 94/127 (74.02%), Query Frame = 1


Query: 15  VNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAYLESPI-SPDEPEDEE 74
           ++SE G  AW+VFD +K    TPEALM EI  AI+NLEYAR TA L+    SP     + 
Sbjct: 1   MSSEEGKTAWSVFDGIKKIPPTPEALMAEIDTAITNLEYARATALLDPQSQSPTHSRTKS 60

Query: 75  PSANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPPEKSSAVAKIQSLIS 134
            + +S S+YD RMAD AY+AGC AL  GKLDEA  SLN+SLSKCPP+K+SAVAK+QSLIS
Sbjct: 61  LNGSSASRYDARMADEAYRAGCAALAAGKLDEAFQSLNISLSKCPPDKTSAVAKLQSLIS 120

Query: 135 LTSQQLQ 141
           LT+QQLQ
Sbjct: 121 LTAQQLQ 127

The following BLAST results are available for this feature:

BLAST of Csa4G639170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L090_CUCSA	1.2e-78	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639170 PE=4 SV=1	[more]
W9R081_9ROSA	5.2e-37	58.33	Uncharacterized protein OS=Morus notabilis GN=L484_003372 PE=4 SV=1	[more]
A0A067KTS2_JATCU	2.6e-36	65.08	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04298 PE=4 SV=1	[more]
B9R7F4_RICCO	2.0e-33	61.42	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1591250 PE=4 SV=1	[more]
A0A0D2SL34_GOSRA	1.7e-32	62.12	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G018000 PE=4 SV=1	[more]

BLAST of Csa4G639170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778696086\|ref\|XP_011654103.1\|	1.7e-78	100.00	PREDICTED: uncharacterized protein LOC101212714 [Cucumis sativus]	[more]
gi\|659103229\|ref\|XP_008452533.1\|	3.1e-67	89.47	PREDICTED: uncharacterized protein LOC103493531 [Cucumis melo]	[more]
gi\|703082885\|ref\|XP_010092068.1\|	7.4e-37	58.33	hypothetical protein L484_003372 [Morus notabilis]	[more]
gi\|643731035\|gb\|KDP38373.1\|	3.7e-36	65.08	hypothetical protein JCGZ_04298 [Jatropha curcas]	[more]
gi\|1000986092\|ref\|XP_015573765.1\|	2.9e-33	61.42	PREDICTED: uncharacterized protein LOC8278900 [Ricinus communis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0031514	motile cilium
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU129403	cucumber EST collection version 3.0	transcribed_cluster
CU162509	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G639170.1	Csa4G639170.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU162509	CU162509	transcribed_cluster
CU129403	CU129403	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G639170	Cla020687	Watermelon (97103) v1	cuwmB319
Csa4G639170	MELO3C016740	Melon (DHL92) v3.5.1	cumeB313
Csa4G639170	ClCG05G019750	Watermelon (Charleston Gray)	cuwcgB310
Csa4G639170	Lsi04G015770	Bottle gourd (USVL1VR-Ls)	culsiB291
Csa4G639170	MELO3C016740.2	Melon (DHL92) v3.6.1	cumedB298
Csa4G639170	Cla97C05G101370	Watermelon (97103) v2	cuwmbB305
Csa4G639170	Bhi09G002748	Wax gourd	cuwgoB419
Csa4G639170	CSPI04G23950	Wild cucumber (PI 183967)	cpicuB181
Csa4G639170	Cucsa.123660	Cucumber (Gy14) v1	cgycuB163
Csa4G639170	CmaCh01G018520	Cucurbita maxima (Rimu)	cmacuB473
Csa4G639170	CmoCh01G019130	Cucurbita moschata (Rifu)	cmocuB461
Csa4G639170	Cp4.1LG02g07040	Cucurbita pepo (Zucchini)	cpecuB564
Csa4G639170	CsGy4G022270	Cucumber (Gy14) v2	cgybcuB166
Csa4G639170	Carg10592	Silver-seed gourd	carcuB0789

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G639170	Silver-seed gourd	carcuB0112
Csa4G639170	Silver-seed gourd	carcuB0204
Csa4G639170	Watermelon (97103) v2	cuwmbB326
Csa4G639170	Wax gourd	cuwgoB385
Csa4G639170	Cucumber (Chinese Long) v2	cucuB062
Csa4G639170	Cucumber (Gy14) v1	cgycuB321
Csa4G639170	Cucumber (Gy14) v1	cgycuB328
Csa4G639170	Cucurbita maxima (Rimu)	cmacuB020
Csa4G639170	Cucurbita maxima (Rimu)	cmacuB186
Csa4G639170	Cucurbita maxima (Rimu)	cmacuB801
Csa4G639170	Cucurbita moschata (Rifu)	cmocuB011
Csa4G639170	Cucurbita moschata (Rifu)	cmocuB169
Csa4G639170	Cucurbita moschata (Rifu)	cmocuB792
Csa4G639170	Melon (DHL92) v3.5.1	cumeB281
Csa4G639170	Melon (DHL92) v3.5.1	cumeB290
Csa4G639170	Watermelon (Charleston Gray)	cuwcgB332
Csa4G639170	Watermelon (97103) v1	cuwmB298
Csa4G639170	Watermelon (97103) v1	cuwmB346
Csa4G639170	Cucurbita pepo (Zucchini)	cpecuB116
Csa4G639170	Cucurbita pepo (Zucchini)	cpecuB782
Csa4G639170	Cucurbita pepo (Zucchini)	cpecuB832
Csa4G639170	Bottle gourd (USVL1VR-Ls)	culsiB317
Csa4G639170	Cucumber (Gy14) v2	cgybcuB073
Csa4G639170	Cucumber (Gy14) v2	cgybcuB316
Csa4G639170	Melon (DHL92) v3.6.1	cumedB266
Csa4G639170	Melon (DHL92) v3.6.1	cumedB275