CmoCh01G019130 (gene) Cucurbita moschata (Rifu)

NameCmoCh01G019130
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionIntraflagellar transport protein
LocationCmo_Chr01 : 13723539 .. 13723997 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCAACGAGATTGGCATAAGAATCCGAAAGGAAAAGAGAATATGAGTTCTGGAGGAGGAATCGCCGCTTGGAATGTGTTTGACAATGTGAAGACCACAACGAAGACGCCTGAAGCTCTAATCGCGGAGATCAATACTGCAATTGCAAATCTCGAATATGCTCGATCAACCGCCTTCTTAGAATCTCCAATTTCTCCCACTCCACAAGATAGGAGCTCTGGTGTGAGCTCAAGTACTCAGTATGATGCACGAATTGCAGATGAAGCGTACAAGGCAGGGTGTGCGGCATTGGCTGTTGGTAAACTCGATGAGGCTCTTCATTCGTTGAATGTCTCTCTTTCGAAATGCCCGCCTGAGAAATCCTCTGCTGTTGCTAAGCTTCAGTCTCTCATCTCTTTGACGTCTAAGCAACTTCAGATCAGATCTTCCAATTGTCATGAAATTTCAGAAGATTGA

mRNA sequence

ATGCCTCAACGAGATTGGCATAAGAATCCGAAAGGAAAAGAGAATATGAGTTCTGGAGGAGGAATCGCCGCTTGGAATGTGTTTGACAATGTGAAGACCACAACGAAGACGCCTGAAGCTCTAATCGCGGAGATCAATACTGCAATTGCAAATCTCGAATATGCTCGATCAACCGCCTTCTTAGAATCTCCAATTTCTCCCACTCCACAAGATAGGAGCTCTGGTGTGAGCTCAAGTACTCAGTATGATGCACGAATTGCAGATGAAGCGTACAAGGCAGGGTGTGCGGCATTGGCTGTTGGTAAACTCGATGAGGCTCTTCATTCGTTGAATGTCTCTCTTTCGAAATGCCCGCCTGAGAAATCCTCTGCTGTTGCTAAGCTTCAGTCTCTCATCTCTTTGACGTCTAAGCAACTTCAGATCAGATCTTCCAATTGTCATGAAATTTCAGAAGATTGA

Coding sequence (CDS)

ATGCCTCAACGAGATTGGCATAAGAATCCGAAAGGAAAAGAGAATATGAGTTCTGGAGGAGGAATCGCCGCTTGGAATGTGTTTGACAATGTGAAGACCACAACGAAGACGCCTGAAGCTCTAATCGCGGAGATCAATACTGCAATTGCAAATCTCGAATATGCTCGATCAACCGCCTTCTTAGAATCTCCAATTTCTCCCACTCCACAAGATAGGAGCTCTGGTGTGAGCTCAAGTACTCAGTATGATGCACGAATTGCAGATGAAGCGTACAAGGCAGGGTGTGCGGCATTGGCTGTTGGTAAACTCGATGAGGCTCTTCATTCGTTGAATGTCTCTCTTTCGAAATGCCCGCCTGAGAAATCCTCTGCTGTTGCTAAGCTTCAGTCTCTCATCTCTTTGACGTCTAAGCAACTTCAGATCAGATCTTCCAATTGTCATGAAATTTCAGAAGATTGA
BLAST of CmoCh01G019130 vs. TrEMBL
Match: A0A0A0L090_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639170 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.8e-53
Identity = 115/153 (75.16%), Postives = 133/153 (86.93%), Query Frame = 1

Query: 1   MPQRDWHKNPKGKENMSSGGGIAAWNVFDNVKTTTKTPEALIAEINTAIANLEYARSTAF 60
           MPQR+ HK+ + +E+++S GGIAAWNVFD+VKTTTKTPEAL+ EI  AI+NLEYAR+TA+
Sbjct: 1   MPQRNRHKSQE-RESVNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAY 60

Query: 61  LESPISPT-PQDRSSGVSSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPP 120
           LESPISP  P+D     +S +QYD R+AD AYKAGC AL VGKLDEALHSLNVSLSKCPP
Sbjct: 61  LESPISPDEPEDEEPSANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPP 120

Query: 121 EKSSAVAKLQSLISLTSKQLQIRSSNCHEISED 153
           EKSSAVAK+QSLISLTS+QLQIRSSNC EISED
Sbjct: 121 EKSSAVAKIQSLISLTSQQLQIRSSNCQEISED 152

BLAST of CmoCh01G019130 vs. TrEMBL
Match: A0A0B0PV11_GOSAR (Intraflagellar transport protein OS=Gossypium arboreum GN=F383_10586 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.5e-36
Identity = 89/124 (71.77%), Postives = 103/124 (83.06%), Query Frame = 1

Query: 16  MSSGGGIAAWNVFDNVKTTTKTPEALIAEINTAIANLEYARSTAFLESPISPTPQDRSSG 75
           M SG G   ++VFD VKT   TPEAL+A+INTAI NLEYAR+TAFL+SP S   +++S  
Sbjct: 1   MGSGEGNPHFSVFDGVKTFPLTPEALMADINTAITNLEYARATAFLDSPSSSLSRNKSL- 60

Query: 76  VSSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLT 135
              S++YDAR+ADEAYKAGCAALA GKLDEA HSLNVSLSKCPPEK+SAVAKLQSLISLT
Sbjct: 61  --YSSEYDARLADEAYKAGCAALAAGKLDEAFHSLNVSLSKCPPEKASAVAKLQSLISLT 120

Query: 136 SKQL 140
           S+QL
Sbjct: 121 SQQL 121

BLAST of CmoCh01G019130 vs. TrEMBL
Match: A0A0D2SL34_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G018000 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.3e-36
Identity = 87/126 (69.05%), Postives = 105/126 (83.33%), Query Frame = 1

Query: 14  ENMSSGGGIAAWNVFDNVKTTTKTPEALIAEINTAIANLEYARSTAFLESPISPTPQDRS 73
           + M SG G   ++VFD VKT + TPEAL+A+INTAI NLEYAR+TAFL+SP S   +++S
Sbjct: 14  KQMGSGEGNPHFSVFDGVKTFSLTPEALMADINTAITNLEYARATAFLDSPSSSLSRNKS 73

Query: 74  SGVSSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLIS 133
                S++YDA++AD+AYKAGCAALA GKLDEA HSLNVSLSKCPPEK+SAVAKLQSLIS
Sbjct: 74  C---DSSEYDAQMADQAYKAGCAALAAGKLDEAFHSLNVSLSKCPPEKASAVAKLQSLIS 133

Query: 134 LTSKQL 140
           LTS+QL
Sbjct: 134 LTSQQL 136

BLAST of CmoCh01G019130 vs. TrEMBL
Match: A0A061FJ44_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_033875 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.2e-35
Identity = 86/124 (69.35%), Postives = 98/124 (79.03%), Query Frame = 1

Query: 16  MSSGGGIAAWNVFDNVKTTTKTPEALIAEINTAIANLEYARSTAFLESPISPTPQDRSSG 75
           M SG G   ++VFD VKT   TPEAL+AEINTAI NLEYAR+TA  +SP S   +++   
Sbjct: 1   MGSGEGNPRFSVFDGVKTFPLTPEALMAEINTAITNLEYARATALFDSPSSSMSRNKGH- 60

Query: 76  VSSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLT 135
              S +YD R+ADEAYKAGCAALA GKLDEA HSLNVSLSKCPPEK+SAVAKLQSLISLT
Sbjct: 61  --DSPRYDTRMADEAYKAGCAALAAGKLDEAFHSLNVSLSKCPPEKTSAVAKLQSLISLT 120

Query: 136 SKQL 140
           S+QL
Sbjct: 121 SQQL 121

BLAST of CmoCh01G019130 vs. TrEMBL
Match: W9R081_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003372 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-34
Identity = 85/124 (68.55%), Postives = 105/124 (84.68%), Query Frame = 1

Query: 25  WNVFDNVKTTTKTPEALIAEINTAIANLEYARSTAFLESPI---SPTPQDRSSGVSSSTQ 84
           WNVFD VK+   TPEAL+AEI++AI+NLE AR+TA L+SP    SP+ + +SS  +S+ Q
Sbjct: 45  WNVFDGVKSIPATPEALMAEIDSAISNLELARATALLQSPSASSSPSGKKKSSDGNSTAQ 104

Query: 85  YDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLTSKQLQI 144
           YD R+ADEA+KAGC+ALA GKLDEALH+LNVSLSKCPP+K+SAVAKL+SLISLTS+QLQ 
Sbjct: 105 YDVRMADEAFKAGCSALAAGKLDEALHALNVSLSKCPPDKTSAVAKLRSLISLTSQQLQ- 164

Query: 145 RSSN 146
           RS N
Sbjct: 165 RSGN 167

BLAST of CmoCh01G019130 vs. NCBI nr
Match: gi|778696086|ref|XP_011654103.1| (PREDICTED: uncharacterized protein LOC101212714 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 2.5e-53
Identity = 115/153 (75.16%), Postives = 133/153 (86.93%), Query Frame = 1

Query: 1   MPQRDWHKNPKGKENMSSGGGIAAWNVFDNVKTTTKTPEALIAEINTAIANLEYARSTAF 60
           MPQR+ HK+ + +E+++S GGIAAWNVFD+VKTTTKTPEAL+ EI  AI+NLEYAR+TA+
Sbjct: 1   MPQRNRHKSQE-RESVNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAY 60

Query: 61  LESPISPT-PQDRSSGVSSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPP 120
           LESPISP  P+D     +S +QYD R+AD AYKAGC AL VGKLDEALHSLNVSLSKCPP
Sbjct: 61  LESPISPDEPEDEEPSANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPP 120

Query: 121 EKSSAVAKLQSLISLTSKQLQIRSSNCHEISED 153
           EKSSAVAK+QSLISLTS+QLQIRSSNC EISED
Sbjct: 121 EKSSAVAKIQSLISLTSQQLQIRSSNCQEISED 152

BLAST of CmoCh01G019130 vs. NCBI nr
Match: gi|659103229|ref|XP_008452533.1| (PREDICTED: uncharacterized protein LOC103493531 [Cucumis melo])

HSP 1 Score: 216.9 bits (551), Expect = 2.5e-53
Identity = 113/152 (74.34%), Postives = 131/152 (86.18%), Query Frame = 1

Query: 1   MPQRDWHKNPKGKENMSSGGGIAAWNVFDNVKTTTKTPEALIAEINTAIANLEYARSTAF 60
           M QR+WHK+ +G+E+++S GGI  WNVFDNVKTTTKTPEAL+AEIN AI+NLEY R+ A+
Sbjct: 1   MHQRNWHKS-QGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAY 60

Query: 61  LESPISPTPQDRSSGVSSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPE 120
           LESPISP  +D     +S +QYD RIAD AYKAGC AL +GKLDEALHSLNVSLSKCPPE
Sbjct: 61  LESPISP--EDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPE 120

Query: 121 KSSAVAKLQSLISLTSKQLQIRSSNCHEISED 153
           KSSAVAK+QSLISLTS+Q+QIRSSNC EISED
Sbjct: 121 KSSAVAKIQSLISLTSQQIQIRSSNCQEISED 149

BLAST of CmoCh01G019130 vs. NCBI nr
Match: gi|728847808|gb|KHG27251.1| (Intraflagellar transport protein [Gossypium arboreum])

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-36
Identity = 89/124 (71.77%), Postives = 103/124 (83.06%), Query Frame = 1

Query: 16  MSSGGGIAAWNVFDNVKTTTKTPEALIAEINTAIANLEYARSTAFLESPISPTPQDRSSG 75
           M SG G   ++VFD VKT   TPEAL+A+INTAI NLEYAR+TAFL+SP S   +++S  
Sbjct: 1   MGSGEGNPHFSVFDGVKTFPLTPEALMADINTAITNLEYARATAFLDSPSSSLSRNKSL- 60

Query: 76  VSSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLT 135
              S++YDAR+ADEAYKAGCAALA GKLDEA HSLNVSLSKCPPEK+SAVAKLQSLISLT
Sbjct: 61  --YSSEYDARLADEAYKAGCAALAAGKLDEAFHSLNVSLSKCPPEKASAVAKLQSLISLT 120

Query: 136 SKQL 140
           S+QL
Sbjct: 121 SQQL 121

BLAST of CmoCh01G019130 vs. NCBI nr
Match: gi|823233194|ref|XP_012449236.1| (PREDICTED: uncharacterized protein LOC105772504 isoform X1 [Gossypium raimondii])

HSP 1 Score: 159.5 bits (402), Expect = 4.8e-36
Identity = 87/126 (69.05%), Postives = 105/126 (83.33%), Query Frame = 1

Query: 14  ENMSSGGGIAAWNVFDNVKTTTKTPEALIAEINTAIANLEYARSTAFLESPISPTPQDRS 73
           + M SG G   ++VFD VKT + TPEAL+A+INTAI NLEYAR+TAFL+SP S   +++S
Sbjct: 14  KQMGSGEGNPHFSVFDGVKTFSLTPEALMADINTAITNLEYARATAFLDSPSSSLSRNKS 73

Query: 74  SGVSSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLIS 133
                S++YDA++AD+AYKAGCAALA GKLDEA HSLNVSLSKCPPEK+SAVAKLQSLIS
Sbjct: 74  C---DSSEYDAQMADQAYKAGCAALAAGKLDEAFHSLNVSLSKCPPEKASAVAKLQSLIS 133

Query: 134 LTSKQL 140
           LTS+QL
Sbjct: 134 LTSQQL 136

BLAST of CmoCh01G019130 vs. NCBI nr
Match: gi|590592486|ref|XP_007017294.1| (Uncharacterized protein TCM_033875 [Theobroma cacao])

HSP 1 Score: 154.8 bits (390), Expect = 1.2e-34
Identity = 86/124 (69.35%), Postives = 98/124 (79.03%), Query Frame = 1

Query: 16  MSSGGGIAAWNVFDNVKTTTKTPEALIAEINTAIANLEYARSTAFLESPISPTPQDRSSG 75
           M SG G   ++VFD VKT   TPEAL+AEINTAI NLEYAR+TA  +SP S   +++   
Sbjct: 1   MGSGEGNPRFSVFDGVKTFPLTPEALMAEINTAITNLEYARATALFDSPSSSMSRNKGH- 60

Query: 76  VSSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLT 135
              S +YD R+ADEAYKAGCAALA GKLDEA HSLNVSLSKCPPEK+SAVAKLQSLISLT
Sbjct: 61  --DSPRYDTRMADEAYKAGCAALAAGKLDEAFHSLNVSLSKCPPEKTSAVAKLQSLISLT 120

Query: 136 SKQL 140
           S+QL
Sbjct: 121 SQQL 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L090_CUCSA1.8e-5375.16Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639170 PE=4 SV=1[more]
A0A0B0PV11_GOSAR1.5e-3671.77Intraflagellar transport protein OS=Gossypium arboreum GN=F383_10586 PE=4 SV=1[more]
A0A0D2SL34_GOSRA3.3e-3669.05Uncharacterized protein OS=Gossypium raimondii GN=B456_010G018000 PE=4 SV=1[more]
A0A061FJ44_THECC8.2e-3569.35Uncharacterized protein OS=Theobroma cacao GN=TCM_033875 PE=4 SV=1[more]
W9R081_9ROSA1.1e-3468.55Uncharacterized protein OS=Morus notabilis GN=L484_003372 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778696086|ref|XP_011654103.1|2.5e-5375.16PREDICTED: uncharacterized protein LOC101212714 [Cucumis sativus][more]
gi|659103229|ref|XP_008452533.1|2.5e-5374.34PREDICTED: uncharacterized protein LOC103493531 [Cucumis melo][more]
gi|728847808|gb|KHG27251.1|2.1e-3671.77Intraflagellar transport protein [Gossypium arboreum][more]
gi|823233194|ref|XP_012449236.1|4.8e-3669.05PREDICTED: uncharacterized protein LOC105772504 isoform X1 [Gossypium raimondii][more]
gi|590592486|ref|XP_007017294.1|1.2e-3469.35Uncharacterized protein TCM_033875 [Theobroma cacao][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0031514 motile cilium
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G019130.1CmoCh01G019130.1mRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G019130Cucurbita moschata (Rifu)cmocmoB017
CmoCh01G019130Cucurbita moschata (Rifu)cmocmoB105
CmoCh01G019130Cucurbita moschata (Rifu)cmocmoB141
CmoCh01G019130Cucurbita moschata (Rifu)cmocmoB352
CmoCh01G019130Cucurbita moschata (Rifu)cmocmoB369
CmoCh01G019130Cucurbita moschata (Rifu)cmocmoB376
CmoCh01G019130Cucumber (Gy14) v1cgycmoB0220
CmoCh01G019130Cucumber (Gy14) v1cgycmoB0626
CmoCh01G019130Cucumber (Gy14) v1cgycmoB0642
CmoCh01G019130Cucurbita maxima (Rimu)cmacmoB047
CmoCh01G019130Cucurbita maxima (Rimu)cmacmoB646
CmoCh01G019130Cucurbita maxima (Rimu)cmacmoB779
CmoCh01G019130Cucurbita maxima (Rimu)cmacmoB851
CmoCh01G019130Wild cucumber (PI 183967)cmocpiB428
CmoCh01G019130Wild cucumber (PI 183967)cmocpiB482
CmoCh01G019130Wild cucumber (PI 183967)cmocpiB491
CmoCh01G019130Cucumber (Chinese Long) v2cmocuB424
CmoCh01G019130Cucumber (Chinese Long) v2cmocuB475
CmoCh01G019130Melon (DHL92) v3.5.1cmomeB403
CmoCh01G019130Melon (DHL92) v3.5.1cmomeB442
CmoCh01G019130Watermelon (Charleston Gray)cmowcgB395
CmoCh01G019130Watermelon (Charleston Gray)cmowcgB435
CmoCh01G019130Watermelon (97103) v1cmowmB416
CmoCh01G019130Watermelon (97103) v1cmowmB445
CmoCh01G019130Cucurbita pepo (Zucchini)cmocpeB420
CmoCh01G019130Cucurbita pepo (Zucchini)cmocpeB465
CmoCh01G019130Cucurbita pepo (Zucchini)cmocpeB474
CmoCh01G019130Bottle gourd (USVL1VR-Ls)cmolsiB390
CmoCh01G019130Bottle gourd (USVL1VR-Ls)cmolsiB442
CmoCh01G019130Cucumber (Gy14) v2cgybcmoB193
CmoCh01G019130Melon (DHL92) v3.6.1cmomedB452
CmoCh01G019130Melon (DHL92) v3.6.1cmomedB461
CmoCh01G019130Silver-seed gourdcarcmoB0146
CmoCh01G019130Silver-seed gourdcarcmoB0259
CmoCh01G019130Cucumber (Chinese Long) v3cmocucB0510
CmoCh01G019130Watermelon (97103) v2cmowmbB486
CmoCh01G019130Wax gourdcmowgoB0570