Cp4.1LG02g07040 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG02g07040
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionIntraflagellar transport protein
LocationCp4.1LG02 : 869809 .. 870267 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCAACGAGATTGGCATAAGAATCCGAAAGGAAAAGAGAATATGAGTTCTGGAGGAGGAATCGCCGCTTGGAATGTGTTTGACAATGTGAAGACCACAACGAAGACGCCTGAAGCTCTAATCGTGGAGATCAATACTGCAATTGCTAATCTCGAATATGCTCGATCAACCGCCTTCTTAGAATCTCCAATTTCTCCCTCTCCACAAGATAGGAGCTCTGGTGCGAGCTCAAGTACTCAGTATGATGCACGAATTGCGGATGAAGCGTACAAGGCAGGGTGTGCGGCATTGGCTGTTGGTAAACTCGATGAGGCTCTTCATTCGTTGAATGTCTCTCTTTCGAAATGCCCGCCTGAGAAATCCTCTGCTGTTGCTAAGCTTCAATCTCTCATCTCTTTGACGTCTCAGCAACTTCAGATCAGATCTTCCAATTGTCATGAAATTTCAGAAGATTGA

mRNA sequence

ATGCCTCAACGAGATTGGCATAAGAATCCGAAAGGAAAAGAGAATATGAGTTCTGGAGGAGGAATCGCCGCTTGGAATGTGTTTGACAATGTGAAGACCACAACGAAGACGCCTGAAGCTCTAATCGTGGAGATCAATACTGCAATTGCTAATCTCGAATATGCTCGATCAACCGCCTTCTTAGAATCTCCAATTTCTCCCTCTCCACAAGATAGGAGCTCTGGTGCGAGCTCAAGTACTCAGTATGATGCACGAATTGCGGATGAAGCGTACAAGGCAGGGTGTGCGGCATTGGCTGTTGGTAAACTCGATGAGGCTCTTCATTCGTTGAATGTCTCTCTTTCGAAATGCCCGCCTGAGAAATCCTCTGCTGTTGCTAAGCTTCAATCTCTCATCTCTTTGACGTCTCAGCAACTTCAGATCAGATCTTCCAATTGTCATGAAATTTCAGAAGATTGA

Coding sequence (CDS)

ATGCCTCAACGAGATTGGCATAAGAATCCGAAAGGAAAAGAGAATATGAGTTCTGGAGGAGGAATCGCCGCTTGGAATGTGTTTGACAATGTGAAGACCACAACGAAGACGCCTGAAGCTCTAATCGTGGAGATCAATACTGCAATTGCTAATCTCGAATATGCTCGATCAACCGCCTTCTTAGAATCTCCAATTTCTCCCTCTCCACAAGATAGGAGCTCTGGTGCGAGCTCAAGTACTCAGTATGATGCACGAATTGCGGATGAAGCGTACAAGGCAGGGTGTGCGGCATTGGCTGTTGGTAAACTCGATGAGGCTCTTCATTCGTTGAATGTCTCTCTTTCGAAATGCCCGCCTGAGAAATCCTCTGCTGTTGCTAAGCTTCAATCTCTCATCTCTTTGACGTCTCAGCAACTTCAGATCAGATCTTCCAATTGTCATGAAATTTCAGAAGATTGA

Protein sequence

MPQRDWHKNPKGKENMSSGGGIAAWNVFDNVKTTTKTPEALIVEINTAIANLEYARSTAFLESPISPSPQDRSSGASSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLTSQQLQIRSSNCHEISED
BLAST of Cp4.1LG02g07040 vs. TrEMBL
Match: A0A0A0L090_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639170 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.0e-53
Identity = 117/153 (76.47%), Postives = 134/153 (87.58%), Query Frame = 1

Query: 1   MPQRDWHKNPKGKENMSSGGGIAAWNVFDNVKTTTKTPEALIVEINTAIANLEYARSTAF 60
           MPQR+ HK+ + +E+++S GGIAAWNVFD+VKTTTKTPEAL+ EI  AI+NLEYAR+TA+
Sbjct: 1   MPQRNRHKSQE-RESVNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAY 60

Query: 61  LESPISPS-PQDRSSGASSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPP 120
           LESPISP  P+D    A+S +QYD R+AD AYKAGC AL VGKLDEALHSLNVSLSKCPP
Sbjct: 61  LESPISPDEPEDEEPSANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPP 120

Query: 121 EKSSAVAKLQSLISLTSQQLQIRSSNCHEISED 153
           EKSSAVAK+QSLISLTSQQLQIRSSNC EISED
Sbjct: 121 EKSSAVAKIQSLISLTSQQLQIRSSNCQEISED 152

BLAST of Cp4.1LG02g07040 vs. TrEMBL
Match: A0A0B0PV11_GOSAR (Intraflagellar transport protein OS=Gossypium arboreum GN=F383_10586 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.3e-36
Identity = 89/124 (71.77%), Postives = 102/124 (82.26%), Query Frame = 1

Query: 16  MSSGGGIAAWNVFDNVKTTTKTPEALIVEINTAIANLEYARSTAFLESPISPSPQDRSSG 75
           M SG G   ++VFD VKT   TPEAL+ +INTAI NLEYAR+TAFL+SP S   +++S  
Sbjct: 1   MGSGEGNPHFSVFDGVKTFPLTPEALMADINTAITNLEYARATAFLDSPSSSLSRNKSL- 60

Query: 76  ASSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLT 135
              S++YDAR+ADEAYKAGCAALA GKLDEA HSLNVSLSKCPPEK+SAVAKLQSLISLT
Sbjct: 61  --YSSEYDARLADEAYKAGCAALAAGKLDEAFHSLNVSLSKCPPEKASAVAKLQSLISLT 120

Query: 136 SQQL 140
           SQQL
Sbjct: 121 SQQL 121

BLAST of Cp4.1LG02g07040 vs. TrEMBL
Match: A0A0D2SL34_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G018000 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.4e-36
Identity = 87/126 (69.05%), Postives = 104/126 (82.54%), Query Frame = 1

Query: 14  ENMSSGGGIAAWNVFDNVKTTTKTPEALIVEINTAIANLEYARSTAFLESPISPSPQDRS 73
           + M SG G   ++VFD VKT + TPEAL+ +INTAI NLEYAR+TAFL+SP S   +++S
Sbjct: 14  KQMGSGEGNPHFSVFDGVKTFSLTPEALMADINTAITNLEYARATAFLDSPSSSLSRNKS 73

Query: 74  SGASSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLIS 133
                S++YDA++AD+AYKAGCAALA GKLDEA HSLNVSLSKCPPEK+SAVAKLQSLIS
Sbjct: 74  C---DSSEYDAQMADQAYKAGCAALAAGKLDEAFHSLNVSLSKCPPEKASAVAKLQSLIS 133

Query: 134 LTSQQL 140
           LTSQQL
Sbjct: 134 LTSQQL 136

BLAST of Cp4.1LG02g07040 vs. TrEMBL
Match: W9R081_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003372 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.3e-35
Identity = 86/124 (69.35%), Postives = 104/124 (83.87%), Query Frame = 1

Query: 25  WNVFDNVKTTTKTPEALIVEINTAIANLEYARSTAFLESPI---SPSPQDRSSGASSSTQ 84
           WNVFD VK+   TPEAL+ EI++AI+NLE AR+TA L+SP    SPS + +SS  +S+ Q
Sbjct: 45  WNVFDGVKSIPATPEALMAEIDSAISNLELARATALLQSPSASSSPSGKKKSSDGNSTAQ 104

Query: 85  YDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLTSQQLQI 144
           YD R+ADEA+KAGC+ALA GKLDEALH+LNVSLSKCPP+K+SAVAKL+SLISLTSQQLQ 
Sbjct: 105 YDVRMADEAFKAGCSALAAGKLDEALHALNVSLSKCPPDKTSAVAKLRSLISLTSQQLQ- 164

Query: 145 RSSN 146
           RS N
Sbjct: 165 RSGN 167

BLAST of Cp4.1LG02g07040 vs. TrEMBL
Match: A0A061FJ44_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_033875 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-34
Identity = 86/124 (69.35%), Postives = 97/124 (78.23%), Query Frame = 1

Query: 16  MSSGGGIAAWNVFDNVKTTTKTPEALIVEINTAIANLEYARSTAFLESPISPSPQDRSSG 75
           M SG G   ++VFD VKT   TPEAL+ EINTAI NLEYAR+TA  +SP S   +++   
Sbjct: 1   MGSGEGNPRFSVFDGVKTFPLTPEALMAEINTAITNLEYARATALFDSPSSSMSRNKGH- 60

Query: 76  ASSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLT 135
              S +YD R+ADEAYKAGCAALA GKLDEA HSLNVSLSKCPPEK+SAVAKLQSLISLT
Sbjct: 61  --DSPRYDTRMADEAYKAGCAALAAGKLDEAFHSLNVSLSKCPPEKTSAVAKLQSLISLT 120

Query: 136 SQQL 140
           SQQL
Sbjct: 121 SQQL 121

BLAST of Cp4.1LG02g07040 vs. NCBI nr
Match: gi|778696086|ref|XP_011654103.1| (PREDICTED: uncharacterized protein LOC101212714 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 1.5e-53
Identity = 117/153 (76.47%), Postives = 134/153 (87.58%), Query Frame = 1

Query: 1   MPQRDWHKNPKGKENMSSGGGIAAWNVFDNVKTTTKTPEALIVEINTAIANLEYARSTAF 60
           MPQR+ HK+ + +E+++S GGIAAWNVFD+VKTTTKTPEAL+ EI  AI+NLEYAR+TA+
Sbjct: 1   MPQRNRHKSQE-RESVNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAY 60

Query: 61  LESPISPS-PQDRSSGASSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPP 120
           LESPISP  P+D    A+S +QYD R+AD AYKAGC AL VGKLDEALHSLNVSLSKCPP
Sbjct: 61  LESPISPDEPEDEEPSANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPP 120

Query: 121 EKSSAVAKLQSLISLTSQQLQIRSSNCHEISED 153
           EKSSAVAK+QSLISLTSQQLQIRSSNC EISED
Sbjct: 121 EKSSAVAKIQSLISLTSQQLQIRSSNCQEISED 152

BLAST of Cp4.1LG02g07040 vs. NCBI nr
Match: gi|659103229|ref|XP_008452533.1| (PREDICTED: uncharacterized protein LOC103493531 [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 1.9e-53
Identity = 114/152 (75.00%), Postives = 131/152 (86.18%), Query Frame = 1

Query: 1   MPQRDWHKNPKGKENMSSGGGIAAWNVFDNVKTTTKTPEALIVEINTAIANLEYARSTAF 60
           M QR+WHK+ +G+E+++S GGI  WNVFDNVKTTTKTPEAL+ EIN AI+NLEY R+ A+
Sbjct: 1   MHQRNWHKS-QGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAY 60

Query: 61  LESPISPSPQDRSSGASSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPE 120
           LESPISP  +D    A+S +QYD RIAD AYKAGC AL +GKLDEALHSLNVSLSKCPPE
Sbjct: 61  LESPISP--EDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPE 120

Query: 121 KSSAVAKLQSLISLTSQQLQIRSSNCHEISED 153
           KSSAVAK+QSLISLTSQQ+QIRSSNC EISED
Sbjct: 121 KSSAVAKIQSLISLTSQQIQIRSSNCQEISED 149

BLAST of Cp4.1LG02g07040 vs. NCBI nr
Match: gi|728847808|gb|KHG27251.1| (Intraflagellar transport protein [Gossypium arboreum])

HSP 1 Score: 159.5 bits (402), Expect = 4.8e-36
Identity = 89/124 (71.77%), Postives = 102/124 (82.26%), Query Frame = 1

Query: 16  MSSGGGIAAWNVFDNVKTTTKTPEALIVEINTAIANLEYARSTAFLESPISPSPQDRSSG 75
           M SG G   ++VFD VKT   TPEAL+ +INTAI NLEYAR+TAFL+SP S   +++S  
Sbjct: 1   MGSGEGNPHFSVFDGVKTFPLTPEALMADINTAITNLEYARATAFLDSPSSSLSRNKSL- 60

Query: 76  ASSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLT 135
              S++YDAR+ADEAYKAGCAALA GKLDEA HSLNVSLSKCPPEK+SAVAKLQSLISLT
Sbjct: 61  --YSSEYDARLADEAYKAGCAALAAGKLDEAFHSLNVSLSKCPPEKASAVAKLQSLISLT 120

Query: 136 SQQL 140
           SQQL
Sbjct: 121 SQQL 121

BLAST of Cp4.1LG02g07040 vs. NCBI nr
Match: gi|823233194|ref|XP_012449236.1| (PREDICTED: uncharacterized protein LOC105772504 isoform X1 [Gossypium raimondii])

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-35
Identity = 87/126 (69.05%), Postives = 104/126 (82.54%), Query Frame = 1

Query: 14  ENMSSGGGIAAWNVFDNVKTTTKTPEALIVEINTAIANLEYARSTAFLESPISPSPQDRS 73
           + M SG G   ++VFD VKT + TPEAL+ +INTAI NLEYAR+TAFL+SP S   +++S
Sbjct: 14  KQMGSGEGNPHFSVFDGVKTFSLTPEALMADINTAITNLEYARATAFLDSPSSSLSRNKS 73

Query: 74  SGASSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLIS 133
                S++YDA++AD+AYKAGCAALA GKLDEA HSLNVSLSKCPPEK+SAVAKLQSLIS
Sbjct: 74  C---DSSEYDAQMADQAYKAGCAALAAGKLDEAFHSLNVSLSKCPPEKASAVAKLQSLIS 133

Query: 134 LTSQQL 140
           LTSQQL
Sbjct: 134 LTSQQL 136

BLAST of Cp4.1LG02g07040 vs. NCBI nr
Match: gi|703082885|ref|XP_010092068.1| (hypothetical protein L484_003372 [Morus notabilis])

HSP 1 Score: 155.2 bits (391), Expect = 9.0e-35
Identity = 86/124 (69.35%), Postives = 104/124 (83.87%), Query Frame = 1

Query: 25  WNVFDNVKTTTKTPEALIVEINTAIANLEYARSTAFLESPI---SPSPQDRSSGASSSTQ 84
           WNVFD VK+   TPEAL+ EI++AI+NLE AR+TA L+SP    SPS + +SS  +S+ Q
Sbjct: 45  WNVFDGVKSIPATPEALMAEIDSAISNLELARATALLQSPSASSSPSGKKKSSDGNSTAQ 104

Query: 85  YDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLTSQQLQI 144
           YD R+ADEA+KAGC+ALA GKLDEALH+LNVSLSKCPP+K+SAVAKL+SLISLTSQQLQ 
Sbjct: 105 YDVRMADEAFKAGCSALAAGKLDEALHALNVSLSKCPPDKTSAVAKLRSLISLTSQQLQ- 164

Query: 145 RSSN 146
           RS N
Sbjct: 165 RSGN 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L090_CUCSA1.0e-5376.47Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639170 PE=4 SV=1[more]
A0A0B0PV11_GOSAR3.3e-3671.77Intraflagellar transport protein OS=Gossypium arboreum GN=F383_10586 PE=4 SV=1[more]
A0A0D2SL34_GOSRA7.4e-3669.05Uncharacterized protein OS=Gossypium raimondii GN=B456_010G018000 PE=4 SV=1[more]
W9R081_9ROSA6.3e-3569.35Uncharacterized protein OS=Morus notabilis GN=L484_003372 PE=4 SV=1[more]
A0A061FJ44_THECC1.4e-3469.35Uncharacterized protein OS=Theobroma cacao GN=TCM_033875 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778696086|ref|XP_011654103.1|1.5e-5376.47PREDICTED: uncharacterized protein LOC101212714 [Cucumis sativus][more]
gi|659103229|ref|XP_008452533.1|1.9e-5375.00PREDICTED: uncharacterized protein LOC103493531 [Cucumis melo][more]
gi|728847808|gb|KHG27251.1|4.8e-3671.77Intraflagellar transport protein [Gossypium arboreum][more]
gi|823233194|ref|XP_012449236.1|1.1e-3569.05PREDICTED: uncharacterized protein LOC105772504 isoform X1 [Gossypium raimondii][more]
gi|703082885|ref|XP_010092068.1|9.0e-3569.35hypothetical protein L484_003372 [Morus notabilis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0031514 motile cilium
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g07040.1Cp4.1LG02g07040.1mRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g07040Wax gourdcpewgoB0684
Cp4.1LG02g07040Cucurbita pepo (Zucchini)cpecpeB090
Cp4.1LG02g07040Cucurbita pepo (Zucchini)cpecpeB125
Cp4.1LG02g07040Cucurbita pepo (Zucchini)cpecpeB264
Cp4.1LG02g07040Cucurbita pepo (Zucchini)cpecpeB414
Cp4.1LG02g07040Cucurbita pepo (Zucchini)cpecpeB459
Cp4.1LG02g07040Cucurbita pepo (Zucchini)cpecpeB471
Cp4.1LG02g07040Cucumber (Gy14) v1cgycpeB0221
Cp4.1LG02g07040Cucumber (Gy14) v1cgycpeB0612
Cp4.1LG02g07040Cucurbita maxima (Rimu)cmacpeB045
Cp4.1LG02g07040Cucurbita maxima (Rimu)cmacpeB679
Cp4.1LG02g07040Cucurbita maxima (Rimu)cmacpeB780
Cp4.1LG02g07040Cucurbita moschata (Rifu)cmocpeB020
Cp4.1LG02g07040Cucurbita moschata (Rifu)cmocpeB166
Cp4.1LG02g07040Cucurbita moschata (Rifu)cmocpeB633
Cp4.1LG02g07040Cucurbita moschata (Rifu)cmocpeB734
Cp4.1LG02g07040Cucurbita moschata (Rifu)cmocpeB820
Cp4.1LG02g07040Wild cucumber (PI 183967)cpecpiB541
Cp4.1LG02g07040Wild cucumber (PI 183967)cpecpiB584
Cp4.1LG02g07040Cucumber (Chinese Long) v2cpecuB539
Cp4.1LG02g07040Cucumber (Chinese Long) v2cpecuB583
Cp4.1LG02g07040Bottle gourd (USVL1VR-Ls)cpelsiB454
Cp4.1LG02g07040Bottle gourd (USVL1VR-Ls)cpelsiB477
Cp4.1LG02g07040Watermelon (Charleston Gray)cpewcgB528
Cp4.1LG02g07040Watermelon (97103) v1cpewmB541
Cp4.1LG02g07040Watermelon (97103) v1cpewmB576
Cp4.1LG02g07040Melon (DHL92) v3.5.1cpemeB508
Cp4.1LG02g07040Melon (DHL92) v3.5.1cpemeB548
Cp4.1LG02g07040Cucumber (Gy14) v2cgybcpeB224
Cp4.1LG02g07040Cucumber (Gy14) v2cgybcpeB820
Cp4.1LG02g07040Cucumber (Gy14) v2cgybcpeB955
Cp4.1LG02g07040Melon (DHL92) v3.6.1cpemedB605
Cp4.1LG02g07040Melon (DHL92) v3.6.1cpemedB637
Cp4.1LG02g07040Melon (DHL92) v3.6.1cpemedB648
Cp4.1LG02g07040Silver-seed gourdcarcpeB0153
Cp4.1LG02g07040Silver-seed gourdcarcpeB0265
Cp4.1LG02g07040Silver-seed gourdcarcpeB1136
Cp4.1LG02g07040Cucumber (Chinese Long) v3cpecucB0675
Cp4.1LG02g07040Cucumber (Chinese Long) v3cpecucB0714
Cp4.1LG02g07040Cucumber (Chinese Long) v3cpecucB0722
Cp4.1LG02g07040Cucumber (Chinese Long) v3cpecucB0736