Csa4G572270 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G572270
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 18773314 .. 18773759 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAACAACCCCATCAAGAGATGGAAAATGAAAAAAAATCAACCCACATTGATTTACTTTCCCCCTTCCTCAACACTGCTAAACTCAGTTACTGAAGGCAGTAAGCAATGAGAGAGGCAGCAGATGCACCTAGCAACGTCCCGACGACTGGCAAAGTAGCGGAAGCAGCGCTAGATGGGCCGGGTGCTGGGGACGCTGCTTCATCAGAGGCCAAAACCATGCTCAGGGAGGCGGCAACAGTGATGAAAGCGGCGCAGGCAAAGTTCTTCATTTCCATGATGAAAGTATGAGGGGAGAAAGAGTTTTAGAGAAAGACCTGCTTGAAAACAAGAGGGAAAGTTCCCTTTTTTAGTTTTTTTTTTAAAATTTTATTTAACTTTTTTTGGTTTTTTTGGGGTTTTTTTTTTTTTAAATTTTATTCTTTTATTCTTTTGTTGGT

mRNA sequence

ATGAGAGAGGCAGCAGATGCACCTAGCAACGTCCCGACGACTGGCAAAGTAGCGGAAGCAGCGCTAGATGGGCCGGGTGCTGGGGACGCTGCTTCATCAGAGGCCAAAACCATGCTCAGGGAGGCGGCAACAGTGATGAAAGCGGCGCAGGCAAAGTTCTTCATTTCCATGATGAAAGTATGA

Coding sequence (CDS)

ATGAGAGAGGCAGCAGATGCACCTAGCAACGTCCCGACGACTGGCAAAGTAGCGGAAGCAGCGCTAGATGGGCCGGGTGCTGGGGACGCTGCTTCATCAGAGGCCAAAACCATGCTCAGGGAGGCGGCAACAGTGATGAAAGCGGCGCAGGCAAAGTTCTTCATTTCCATGATGAAAGTATGA

Protein sequence

MREAADAPSNVPTTGKVAEAALDGPGAGDAASSEAKTMLREAATVMKAAQAKFFISMMKV*

Homology

[Close]

BLAST of Csa4G572270 vs. TrEMBL
Match: A0A0A0L2P9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G572270 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.3e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  MREAADAPSNVPTTGKVAEAALDGPGAGDAASSEAKTMLREAATVMKAAQAKFFISMMKV 60
          MREAADAPSNVPTTGKVAEAALDGPGAGDAASSEAKTMLREAATVMKAAQAKFFISMMKV
Sbjct: 1  MREAADAPSNVPTTGKVAEAALDGPGAGDAASSEAKTMLREAATVMKAAQAKFFISMMKV 60

[Close]

BLAST of Csa4G572270 vs. NCBI nr
Match: gi|700199724|gb|KGN54882.1| (hypothetical protein Csa_4G572270 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  MREAADAPSNVPTTGKVAEAALDGPGAGDAASSEAKTMLREAATVMKAAQAKFFISMMKV 60
          MREAADAPSNVPTTGKVAEAALDGPGAGDAASSEAKTMLREAATVMKAAQAKFFISMMKV
Sbjct: 1  MREAADAPSNVPTTGKVAEAALDGPGAGDAASSEAKTMLREAATVMKAAQAKFFISMMKV 60

The following BLAST results are available for this feature:

BLAST of Csa4G572270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2P9_CUCSA	1.3e-23	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G572270 PE=4 SV=1	[more]

BLAST of Csa4G572270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199724\|gb\|KGN54882.1\|	1.9e-23	100.00	hypothetical protein Csa_4G572270 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU113026	cucumber EST collection version 3.0	transcribed_cluster
CU119821	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G572270.1	Csa4G572270.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU113026	CU113026	transcribed_cluster
CU119821	CU119821	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G572270	Lsi01G019220	Bottle gourd (USVL1VR-Ls)	culsiB259
Csa4G572270	Bhi03G002167	Wax gourd	cuwgoB410
Csa4G572270	CSPI04G21040	Wild cucumber (PI 183967)	cpicuB181

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G572270	Cucurbita maxima (Rimu)	cmacuB670
Csa4G572270	Cucurbita maxima (Rimu)	cmacuB861
Csa4G572270	Cucurbita moschata (Rifu)	cmocuB658
Csa4G572270	Cucurbita moschata (Rifu)	cmocuB849
Csa4G572270	Melon (DHL92) v3.5.1	cumeB332
Csa4G572270	Watermelon (Charleston Gray)	cuwcgB303
Csa4G572270	Watermelon (97103) v1	cuwmB334
Csa4G572270	Cucurbita pepo (Zucchini)	cpecuB071
Csa4G572270	Cucurbita pepo (Zucchini)	cpecuB498
Csa4G572270	Cucumber (Gy14) v2	cgybcuB166
Csa4G572270	Silver-seed gourd	carcuB0309
Csa4G572270	Watermelon (97103) v2	cuwmbB301
Csa4G572270	Wax gourd	cuwgoB404
Csa4G572270	Cucumber (Gy14) v1	cgycuB501