Lsi01G019220 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G019220
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr01 : 23842638 .. 23842820 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAGGCAACAGATGCACCTAGCAACGTCCCGACGACGGGCAAAGTAGCCGAAGCACCGCTGGTTGGGCCGGGTGCTGGGGCTGCCGCTTCATTGGCAGCCAAAACCATGCTCAGGGAGGCAGCAACAGCGACGAAGGCGGCACAGGTGAAGTTCTTCATTTCCATGATGAAAAGATAA

mRNA sequence

ATGAGAGAGGCAACAGATGCACCTAGCAACGTCCCGACGACGGGCAAAGTAGCCGAAGCACCGCTGGTTGGGCCGGGTGCTGGGGCTGCCGCTTCATTGGCAGCCAAAACCATGCTCAGGGAGGCAGCAACAGCGACGAAGGCGGCACAGGTGAAGTTCTTCATTTCCATGATGAAAAGATAA

Coding sequence (CDS)

ATGAGAGAGGCAACAGATGCACCTAGCAACGTCCCGACGACGGGCAAAGTAGCCGAAGCACCGCTGGTTGGGCCGGGTGCTGGGGCTGCCGCTTCATTGGCAGCCAAAACCATGCTCAGGGAGGCAGCAACAGCGACGAAGGCGGCACAGGTGAAGTTCTTCATTTCCATGATGAAAAGATAA

Protein sequence

MREATDAPSNVPTTGKVAEAPLVGPGAGAAASLAAKTMLREAATATKAAQVKFFISMMKR

Homology

[Close]

BLAST of Lsi01G019220 vs. TrEMBL
Match: A0A0A0L2P9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G572270 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-14
Identity = 50/59 (84.75%), Postives = 50/59 (84.75%), Query Frame = 1


Query: 1  MREATDAPSNVPTTGKVAEAPLVGPGAGAAASLAAKTMLREAATATKAAQVKFFISMMK 60
          MREA DAPSNVPTTGKVAEA L GPGAG AAS  AKTMLREAAT  KAAQ KFFISMMK
Sbjct: 1  MREAADAPSNVPTTGKVAEAALDGPGAGDAASSEAKTMLREAATVMKAAQAKFFISMMK 59

[Close]

BLAST of Lsi01G019220 vs. TrEMBL
Match: A0A151SXF5_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_014921 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.1e-06
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 2  REATDAPSNVPTTGKVAEAPLVGPGAGAAASLAAKTMLREAATATKAAQVKFFISMM 59
          +E T+APS  PT GKVAEAPL+GPGAG   S+AA T L E AT  +  QV FF+SMM
Sbjct: 1  KETTEAPSKEPTRGKVAEAPLLGPGAGVGTSVAATTTLMEVAT-MRIMQVTFFMSMM 56

[Close]

BLAST of Lsi01G019220 vs. NCBI nr
Match: gi|700199724|gb|KGN54882.1| (hypothetical protein Csa_4G572270 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-14
Identity = 50/59 (84.75%), Postives = 50/59 (84.75%), Query Frame = 1


Query: 1  MREATDAPSNVPTTGKVAEAPLVGPGAGAAASLAAKTMLREAATATKAAQVKFFISMMK 60
          MREA DAPSNVPTTGKVAEA L GPGAG AAS  AKTMLREAAT  KAAQ KFFISMMK
Sbjct: 1  MREAADAPSNVPTTGKVAEAALDGPGAGDAASSEAKTMLREAATVMKAAQAKFFISMMK 59

[Close]

BLAST of Lsi01G019220 vs. NCBI nr
Match: gi|1012348295|gb|KYP59486.1| (hypothetical protein KK1_014921, partial [Cajanus cajan])

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-06
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 2  REATDAPSNVPTTGKVAEAPLVGPGAGAAASLAAKTMLREAATATKAAQVKFFISMM 59
          +E T+APS  PT GKVAEAPL+GPGAG   S+AA T L E AT  +  QV FF+SMM
Sbjct: 1  KETTEAPSKEPTRGKVAEAPLLGPGAGVGTSVAATTTLMEVAT-MRIMQVTFFMSMM 56

The following BLAST results are available for this feature:

BLAST of Lsi01G019220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G019220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2P9_CUCSA	1.8e-14	84.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G572270 PE=4 SV=1	[more]
A0A151SXF5_CAJCA	3.1e-06	61.40	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_014921 PE=4 SV=1	[more]

BLAST of Lsi01G019220 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi01G019220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199724\|gb\|KGN54882.1\|	2.6e-14	84.75	hypothetical protein Csa_4G572270 [Cucumis sativus]	[more]
gi\|1012348295\|gb\|KYP59486.1\|	4.5e-06	61.40	hypothetical protein KK1_014921, partial [Cajanus cajan]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G019220.1	Lsi01G019220.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G019220	Csa4G572270	Cucumber (Chinese Long) v2	culsiB259
Lsi01G019220	CSPI04G21040	Wild cucumber (PI 183967)	cpilsiB258
Lsi01G019220	Bhi03G002167	Wax gourd	lsiwgoB173

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G019220	Melon (DHL92) v3.6.1	lsimedB161
Lsi01G019220	Silver-seed gourd	carlsiB259
Lsi01G019220	Silver-seed gourd	carlsiB260
Lsi01G019220	Cucumber (Chinese Long) v3	cuclsiB279
Lsi01G019220	Watermelon (97103) v2	lsiwmbB133
Lsi01G019220	Wax gourd	lsiwgoB188
Lsi01G019220	Cucumber (Gy14) v1	cgylsiB575
Lsi01G019220	Cucurbita maxima (Rimu)	cmalsiB598
Lsi01G019220	Cucurbita maxima (Rimu)	cmalsiB792
Lsi01G019220	Cucurbita moschata (Rifu)	cmolsiB583
Lsi01G019220	Cucurbita moschata (Rifu)	cmolsiB780
Lsi01G019220	Cucurbita pepo (Zucchini)	cpelsiB055
Lsi01G019220	Cucurbita pepo (Zucchini)	cpelsiB392
Lsi01G019220	Melon (DHL92) v3.5.1	lsimeB152
Lsi01G019220	Watermelon (Charleston Gray)	lsiwcgB135
Lsi01G019220	Watermelon (97103) v1	lsiwmB153
Lsi01G019220	Cucumber (Gy14) v2	cgyblsiB243