CU119821 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU119821
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 18773402 .. 18773734 (+)
Sequence length	327

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TAAAAAAGGAACTTCCTCTTGTTTTCAAGCAGGTCTTTCTCTAAAACTCTTTCTCCCCTCATACTTTCATCATGGAAATGAAGAACTTTGCCTGCGCCGCTTTCATCACTGTTGCCGCCTCCCTGAGCATGGTTTTGGCCTCTGATGAAGCAGCGTCCCCAGCACCCGGCCCATCTAGCGCTGCTTCCGCTACTTTGCCAGTCGTCGGGACGTTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTGCCTTCAGTAACTGAGTTTAGCAGTGTTGAGGAAGGGGGAAATAAATCAATGTGGGTTTATTTTTTTCATTTTCCATC

Library


Library category	ESTs
gynoecious flower library	2

Homology

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BLAST of CU119821 vs. TrEMBL
Match: A0A0A0L2P9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G572270 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-11
Identity = 42/60 (70.00%), Postives = 42/60 (70.00%), Query Frame = -3


Query: 62  MREAADAPSNVPTTGKVXXXXXXXXXXXXXXXXXXKTMLREAATVMKAAQAKFFISMMKV 121
           MREAADAPSNVPTTGKV                  KTMLREAATVMKAAQAKFFISMMKV
Sbjct: 1   MREAADAPSNVPTTGKVAEAALDGPGAGDAASSEAKTMLREAATVMKAAQAKFFISMMKV 60

Query: 122  181
           
Sbjct: 61   60

Query: 182  241
           
Sbjct: 121  60

[Close]

BLAST of CU119821 vs. NCBI nr
Match: gi|700199724|gb|KGN54882.1| (hypothetical protein Csa_4G572270 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-11
Identity = 42/60 (70.00%), Postives = 42/60 (70.00%), Query Frame = -3


Query: 62  MREAADAPSNVPTTGKVXXXXXXXXXXXXXXXXXXKTMLREAATVMKAAQAKFFISMMKV 121
           MREAADAPSNVPTTGKV                  KTMLREAATVMKAAQAKFFISMMKV
Sbjct: 1   MREAADAPSNVPTTGKVAEAALDGPGAGDAASSEAKTMLREAATVMKAAQAKFFISMMKV 60

Query: 122  181
           
Sbjct: 61   60

Query: 182  241
           
Sbjct: 121  60

The following BLAST results are available for this feature:

BLAST of CU119821 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2P9_CUCSA	3.4e-11	70.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G572270 PE=4 SV=1	[more]

BLAST of CU119821 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199724\|gb\|KGN54882.1\|	2.9e-11	70.00	hypothetical protein Csa_4G572270 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G572270	Csa4G572270	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0047951	G0047951	EST
G0073546	G0073546	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34672	FAMILY NOT NAMED	coord: 1..60 score: 1.5