Csa4G496770 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G496770
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	RNA polymerase II transcriptional coactivator, putative; contains IPR009044 (ssDNA-binding transcriptional regulator)
Location	Chr4 : 17349937 .. 17354926 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGTAATTGTTGCGTTTGTGATGCGTTTTTGTATATTACGGGAATTCCGCGGCATTGAGTTGGTAAGTGTTTTGAGGAGCAAAGAGTTTGTGAAGAAGTAGAAGTCGAAGAAAAGAAAGCAAGCAAAAAAAAGGAGGAAGAAAAATGTCTGCAAGTGGAAAGCGAAAGGGCGATGAAGATGACGTATCCGAAGGAGATGCTCCTCCTTCCAAAACATTCAAGAAAGATTCTGACGATACCGATGAAATCGTTGTTTGCGAGGTCTTTCTTTCACTTCCTTTCTCCTTCCCCCATTTTCTTTACCGCCTTTACCTATCCTCCTTTCAAACTCTTTAATGCCTCTTTTTTCTTCCTCTAGCTTTCAAAGAACCGTAGGGTTATGGTCAGGAACTGGCAAGGAAAGATTGTTGTCGATATTCGCGAGTTTTATGTCAAAGATGGCAAGCAGATGCCTGGAAAGAAAGGTTCATCTCCTCATCCCTATTCTTTTCTTTTTCGCTATCTCCCTGTGGATGGATGAATTGGGTTTTTTTATTTTTTTTTCTCTTTCCTTTCTTTTTAGGGTTTTTGTTTCACTTTTGTGTGTTGCATTTGCCTTTGTTGTAGTTTTGAATTGCCAAATGATCCTTTAGGGATAGTTGAGTGATTTTAAATGTAGTACTTACTCACTAACAACTCACCTTTTAATTTCAACTTAGGCTACCTATGTTAGATATCCCCTTACTTCCACACATGCTTCCAAGCTTTGTCTAAGATTCCCTCAAACATACATACTTGGGCTCCTTCTAAGTATGGAATAGACTCTATTGCTATTTTACTTACAGTGAAAGACCCAAGTGAATCCACTTAGTCTAATTTAAATGACAATCGACAACATCCTCAACGGCTTTGAAGCATAGACACGATGATATGCAGATTTCCAAAATATTAGGAAACTGACGTGTTGGGGTGTCGGGGATACACATACACTATTTTTTCTAGAATCTAGTTAACTTTAACGTAAAATTGATAAAACATTTGAGATTGGATGGGTAAACGCCAAGAAGCGATAGCTGTAAAAAAATAAAGCATACTTGAATCCTCGATCCTTAATGTGCACGACAAGTCTGGGAGTTGAAATCAAATGTTTATGATATTCTATTTAGGTTTTAGGTTTTATGACATTTATATATTTTTAAAAAGGAAGTTGATGGCCTTTAAATTTGGGTTCGAACTTAAAATTCTCCTTTAATTTCTTCTAGTGTGTCCATGAAGTGCCTTCCAAGTGTGTCAAAATTCAAAACTAAAAATAAAGAATAGGACATGCAAATTGACGTGTCGGACACGTTTCCAGCCAAATCCGTGTCCGATAGGTGTTTGACATTGATACGACCTTTGTGAAGTGTCCGTGCTTCATAGCTCAACAGCGAAGTTCACAACAATTATTGCAGTATATCACAAAGCTCTCTACAGAAGTACTCACCACAAGGCGTGACAATGGTCGTGTGCAAAAAACATGCAACCCTTTCAAGCACAATCCCACACCATATATATATGGTGCTGCCTTGAGGAGATCTTCCAAAACAGAATAAAATTTTTTATGCAACCAGGAAGGAAAATAGTTGTTCAACATTGCACTGGTTGCAGTGATTTTTTTTTTTTCATCAAACATAATCTCTTTCATTAAGGGAAAAAAAAAATGAAAGAGTACAAGCACAACAATAAAACAAGCCCACAAAATCCCTTTGAAGAAAGGGTTACCAACTTTGTAAAATGCTACTTAGAGGATATAATTACAAGAAATCTTTGAGATTGAAGCCCAAGTAACGGTAACCTCACCAAGGAGCAAACATCACCAGCCTCTTCTACATTGATCTTGTGAATTAACAACTATAGACCAGGCGATTTAGATCTTCCTCTGTGCCTTTCAACGAAGAATCAACAAAAAGGTGCCATAAGTGAAGATTTCTTCTGCAGAAGCCTATTCAAAGTGTTCCAATGTCCAAGTTAAACTTGCCAAGTGTTGATTTTATGGAATAAATCTATATTTTATTTATTATTTAATAGAGATACAAGCCTATATATAACCATAGAGAAATACACTTAAGGAAATAATATCAAATAATATCTCCAGAATAATATCTCCTAAGAATAATCTAATTATATTAATACCAAGTATTAGGGATCTTAATCCTCCAAAGCAGATCTAAGATTGACTAGTTAACGAGAGAAGGATCCAATAACACCAAAATGGGAATTACAAGAAAACGTTAAAGAGGGTTAGGATTTCAAACACCAACATCCATTCTCGCAAGTCTCAAACTGAAATCATCAAGTAAAGATAACAAAGAGTCAACCTTTATTGTTTCCCTACTGAACAAAGAAATACGGAACCCAAAGAAAAAGACATTGAGCTTCTTGACTAAAATAAGAAGTCAGAAACAGAATGGTTCTTATATGAAGAAAGATGATATAAATGAGGAAACACAGATTAGAGAGGTCTAATCCCCACCTACTGATCTTCCCACAACTAAGTATCCTTGTCCTTCGCCTACCGCAACAAAAACATGAAGGGAGAAGGAAAGGAGCTCAAGAGAAATGTCTTTCCACAGGTTTCAGAATGAACGCTTGACACCTTTGGACAATCTTTCAAAGGGATGGGGGCTATACCTTTCATAAATGACTAGATACAAAACATTTTTCCTCACAAGTTACCTAGAATAAAAGTAGCCAATTTAACTACATTAACAACTGTAGACATTGCTCAGCGATTTCCTAGCTATTAACAGCTTGCAGTTTCTTAGAAAAGTTAGTTAAGAACAATCTGGTAGCATATTGGCTTCTTAATTCTTCTTTATAGGCAGATTTTGGGATAAGTCTTGAGGGTGAAGTGTGTTTATATGGAGACAGTGTGTACAAACTCTAGATTTTGGATAACTTGGGTTAAACAGTTAATTTAAATTGGCTAAAAATGGCCCCTTAATGGGGTATCGATGGTGGGTCTTGTTTCACTATTTTTTCAGAAAGAAATTTGCATAAGGAGTGACCTTGGTGTATCGCTGGGGTGTTCTAGGCATGTCTTGGAGTGTCCTGAGTCCTGACGTTTTGGAAAGCCAAATAATTATAAAAAATAATGGACATGCCAACTAGCATGTTGGAGGCAGTCGGAGTGTGTCGGTGTCCAACACTTTTTCGATGTTGACACTTAGCCAGTTTGGAAATGTGAGTGCTTTATAGATTAATTCCATTTTTATCCTTCCTAGTATGTGTATATGAACTATAACATTTCAAAATGGTGCAAACTTTTTTTTAAATTTTAATCTGGAAATGCTGAGATGTCACAAAGACCCAAGCATACATGTGAGCACTCTTTTGTTAATGGAAAGAGAAGCATACTAGAACTATAACTAGTATGCAGTGCTTTAAAAAGCCCTCCCGGGCGCAAGCCTAGGCTCAAGGTGCAAGTTTGGCACCTCACCTTTGCGAGGTTCTCAAAATAAGGCGTGACTCAAGTGCGTGCCTCTTGTGATTCCCCAAGGCTCAAAGCCCTGCATCTTGGGGCTTTTTTATTCTTTATAAAATAGAAATAATTAGGGTTTACTTTATTAACTAAAAAAACCAATTTTAATAAGCCAAAATGCAAAATTTCTTGCGTTTAGAGGTCTGTTTTTTCATATTTCCACTTCAACCATGTTTTTTCTTTCTATTGTAGTACTTTTATGTATGGTGCGCCTCATAAAAAACCGGGTGCTTAAGCCCCATAAGACTATTATGCTTTATTTTACCTTGAGTTTTAAATAACACTGGCACGATGGAGAAGGAGATAGGTAATTAAAGTAAAAAGTGAAAGGGAGAGTATATCTAGCAAAGAGTGAGGTTGGTCCAAGATCGGAAGAAATCATTTGTGGAGGGTAAAATTTTCATTTCTTGTTTATCCTGGAAACTTTTAAATGGATCATTGTTTAAAAGATGGTCTATTTACTAACAGGGAGGACCACAAGATTTCTCGATCAGTCCCTGATGCATTGTAACAATCATAAGTTCTAATTCCTATACCCTTCCGGATTACAACACCATACATGCTATATTATGTAGTCATATATAAATATATTCAGTTTGTTCTGTAGCCAAGCTTATCATAAAATAAGATATTAAAACGCAAAATACTTTGGATCTCGTATTTAAAGGTGAAGTAAATTTGAGCTGAAAAGTGTTTCTCCTAATGAAAGATTTAAGCAATAAAAACACTGCTTTATTGTAATGTCTTTCCAAGAAGGTGCAAAAGGGGAATTAATTTGCTATTAGAGGGTCATGGGTAAGGCATTTACAATTTTGGTAGGATACTTGAGTATAAGTTCAAGTTTGAACTTCTGTGGTTAAGGACTCTAGTGTTTATGCATGATTTCTTATTCTGCTAAATTGATATTTTTTTCCATTTTTTGGGCCATTTGTCTTCTTTATTGTCATGTATATTATTTTATTTGTTCTCGATCAAAGTAGGCCTTTTTCATTTTTCTTTGATGAGTGGCCAAGCTTATTGAAAAAAACAATCAACGAATACAAATGCATTCAAGGAAAAATAGTTCTCCCTCCTTTGGAGACTTTAGGAAATGCTAGCGTTTTTCATAGTCAAGAAACTAACATGGATGTTTTTTGGGATTTATTCAAACTTTTTGCTGTACTTGGTCCTCTAGTTCAAAATTCTTTTTGTAATTATAGTCTAACTTTGATGTACCACAGTTGGGCCTTTTTTATAATAATAAATATATATAAATATAGAAGATTCAGAAGCTGAGTGGCCTTTTGATTTCTTTGTTTCCAGGCATCTCGCTATCCTTGGATCAGGTTTGCACCTATATTATTTTAATTTTTTTCCTTTTCCTTTTTTGTTTTAGAAAAAAAGAATAATCTTCTGCTTTCTGTAATGGCGGTCTTCTGCAGTGGAACGTTCTTCTAAATCACGTAGAAGAAATTGACAAGGCTGTTAATGAAAACTCGTCAGGAGATTAG

mRNA sequence

ATGTCTGCAAGTGGAAAGCGAAAGGGCGATGAAGATGACGTATCCGAAGGAGATGCTCCTCCTTCCAAAACATTCAAGAAAGATTCTGACGATACCGATGAAATCGTTGTTTGCGAGCTTTCAAAGAACCGTAGGGTTATGGTCAGGAACTGGCAAGGAAAGATTGTTGTCGATATTCGCGAGTTTTATGTCAAAGATGGCAAGCAGATGCCTGGAAAGAAAGGCATCTCGCTATCCTTGGATCAGTGGAACGTTCTTCTAAATCACGTAGAAGAAATTGACAAGGCTGTTAATGAAAACTCGTCAGGAGATTAG

Coding sequence (CDS)

ATGTCTGCAAGTGGAAAGCGAAAGGGCGATGAAGATGACGTATCCGAAGGAGATGCTCCTCCTTCCAAAACATTCAAGAAAGATTCTGACGATACCGATGAAATCGTTGTTTGCGAGCTTTCAAAGAACCGTAGGGTTATGGTCAGGAACTGGCAAGGAAAGATTGTTGTCGATATTCGCGAGTTTTATGTCAAAGATGGCAAGCAGATGCCTGGAAAGAAAGGCATCTCGCTATCCTTGGATCAGTGGAACGTTCTTCTAAATCACGTAGAAGAAATTGACAAGGCTGTTAATGAAAACTCGTCAGGAGATTAG

Protein sequence

MSASGKRKGDEDDVSEGDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENSSGD*

Homology

[Close]

BLAST of Csa4G496770 vs. Swiss-Prot
Match: KIWI_ARATH (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.7e-30
Identity = 67/107 (62.62%), Postives = 79/107 (73.83%), Query Frame = 1


Query: 1   MSASGKRKGDE----DDVSEGDAPPSKTFKK--DSDDTDEIVVCELSKNRRVMVRNWQGK 60
           MS+ GKRK ++    DD SE  AP  K  K   DSD +D+IVVC +SKNRRV VRNW GK
Sbjct: 1   MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61  IVVDIREFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENS 102
           I +DIREFYVKDGK +PGKKGISLS+DQWN L NH E+I+KA+++ S
Sbjct: 61  IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107

[Close]

BLAST of Csa4G496770 vs. Swiss-Prot
Match: KELP_ARATH (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.7e-13
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 1


Query: 27  KDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVL 86
           K+ DD  ++++C LS  RRV ++ ++GK +V IRE+Y KDGK++P  KGISL+ +QW+  
Sbjct: 88  KEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLTDEQWSTF 147

Query: 87  LNHVEEIDKAVNENSS 103
             ++  I+ AV +  S
Sbjct: 148 KKNMPAIENAVKKMES 163

[Close]

BLAST of Csa4G496770 vs. Swiss-Prot
Match: TCP4_CHICK (Activated RNA polymerase II transcriptional coactivator p15 OS=Gallus gallus GN=SUB1 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-10
Identity = 32/84 (38.10%), Postives = 54/84 (64.29%), Query Frame = 1


Query: 17  GDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKG 76
           G++       K S + DE +  ++ K R V VR+++GK+++DIRE+++ ++G+  PG+KG
Sbjct: 43  GESSKGAASSKQSSNRDENMF-QIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMKPGRKG 102

Query: 77  ISLSLDQWNVLLNHVEEIDKAVNE 100
           ISL+ +QWN L   + +ID AV +
Sbjct: 103 ISLNPEQWNQLKEQISDIDDAVRK 125

[Close]

BLAST of Csa4G496770 vs. Swiss-Prot
Match: TCP4_RAT (Activated RNA polymerase II transcriptional coactivator p15 OS=Rattus norvegicus GN=Sub1 PE=1 SV=3)

HSP 1 Score: 64.3 bits (155), Expect = 9.0e-10
Identity = 30/84 (35.71%), Postives = 54/84 (64.29%), Query Frame = 1


Query: 17  GDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKG 76
           G++  +    K S  + +  + ++ K R V VR+++GKI++DIRE+++  +G+  PG+KG
Sbjct: 43  GESSRALASSKQSSSSRDDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKG 102

Query: 77  ISLSLDQWNVLLNHVEEIDKAVNE 100
           ISL+++QW+ L   + +ID AV +
Sbjct: 103 ISLNMEQWSQLKEQISDIDDAVRK 126

[Close]

BLAST of Csa4G496770 vs. Swiss-Prot
Match: TCP4_MOUSE (Activated RNA polymerase II transcriptional coactivator p15 OS=Mus musculus GN=Sub1 PE=1 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-09
Identity = 30/84 (35.71%), Postives = 53/84 (63.10%), Query Frame = 1


Query: 17  GDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKG 76
           G+   +    K S  + +  + ++ K R V VR+++GKI++DIRE+++  +G+  PG+KG
Sbjct: 43  GETSRALASSKQSSSSRDDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKG 102

Query: 77  ISLSLDQWNVLLNHVEEIDKAVNE 100
           ISL+++QW+ L   + +ID AV +
Sbjct: 103 ISLNMEQWSQLKEQISDIDDAVRK 126

[Close]

BLAST of Csa4G496770 vs. TrEMBL
Match: A0A0A0L2F1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G496770 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.3e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 1   MSASGKRKGDEDDVSEGDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIR 60
           MSASGKRKGDEDDVSEGDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSASGKRKGDEDDVSEGDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENSSGD 105
           EFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENSSGD
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENSSGD 104

[Close]

BLAST of Csa4G496770 vs. TrEMBL
Match: V7AVU6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G154400g PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-34
Identity = 77/105 (73.33%), Postives = 87/105 (82.86%), Query Frame = 1


Query: 1   MSASGKRK---GDEDDVSEGDAPPSKTFKKDSDD-TDEIVVCELSKNRRVMVRNWQGKIV 60
           MS   KR+   G  D  SEG APP KT K+DSDD +D IVVCE+SKNRRV VRNWQG+IV
Sbjct: 1   MSGKAKRRDEDGASDADSEGHAPPKKTLKRDSDDESDSIVVCEISKNRRVSVRNWQGRIV 60

Query: 61  VDIREFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENS 102
           VDIREFY+KDGK+MPGKKGISL++DQWNVL  HVEEIDKAV+ENS
Sbjct: 61  VDIREFYLKDGKKMPGKKGISLTMDQWNVLRTHVEEIDKAVSENS 105

[Close]

BLAST of Csa4G496770 vs. TrEMBL
Match: I3SIW1_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.1e-34
Identity = 76/105 (72.38%), Postives = 86/105 (81.90%), Query Frame = 1


Query: 1   MSASGKRKGDEDDVSEGD----APPSKTFKKDSD-DTDEIVVCELSKNRRVMVRNWQGKI 60
           MS  GK++ D D  S+ D    APP K+ KKDSD D D IVVCE+SKNRRV VRNWQG+I
Sbjct: 1   MSGKGKKRDDLDRASDADSDSHAPPKKSLKKDSDEDPDSIVVCEISKNRRVSVRNWQGRI 60

Query: 61  VVDIREFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNEN 101
           VVDI EFYVKDGKQMPGKKGISL++DQWNVL NH+EEIDKAVNE+
Sbjct: 61  VVDILEFYVKDGKQMPGKKGISLTMDQWNVLRNHIEEIDKAVNES 105

[Close]

BLAST of Csa4G496770 vs. TrEMBL
Match: I1KBM5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G155900 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-34
Identity = 75/105 (71.43%), Postives = 86/105 (81.90%), Query Frame = 1


Query: 1   MSASGKRKGDE---DDVSEGDAPPSKTFKKDSDDT-DEIVVCELSKNRRVMVRNWQGKIV 60
           MS   KR+ D+   D  SEG APP K+ KKDSDD  D I VCE+SKNRRV VRNW+G I+
Sbjct: 1   MSGKAKRRDDDGASDADSEGHAPPKKSLKKDSDDDPDSITVCEISKNRRVAVRNWKGSIM 60

Query: 61  VDIREFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENS 102
           VDIREFYVKDGKQ+PG+KGISL++DQWNVL NHVEEIDKA+NENS
Sbjct: 61  VDIREFYVKDGKQLPGRKGISLTMDQWNVLRNHVEEIDKAINENS 105

[Close]

BLAST of Csa4G496770 vs. TrEMBL
Match: A0A0B2PPL3_GLYSO (RNA polymerase II transcriptional coactivator KIWI OS=Glycine soja GN=glysoja_011908 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-34
Identity = 75/105 (71.43%), Postives = 86/105 (81.90%), Query Frame = 1


Query: 1   MSASGKRKGDE---DDVSEGDAPPSKTFKKDSDDT-DEIVVCELSKNRRVMVRNWQGKIV 60
           MS   KR+ D+   D  SEG APP K+ KKDSDD  D I VCE+SKNRRV VRNW+G I+
Sbjct: 1   MSGKAKRRDDDGASDADSEGHAPPKKSLKKDSDDDPDSITVCEISKNRRVAVRNWKGSIM 60

Query: 61  VDIREFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENS 102
           VDIREFYVKDGKQ+PG+KGISL++DQWNVL NHVEEIDKA+NENS
Sbjct: 61  VDIREFYVKDGKQLPGRKGISLTMDQWNVLRNHVEEIDKAINENS 105

[Close]

BLAST of Csa4G496770 vs. TAIR10
Match: AT5G09250.1 (AT5G09250.1 ssDNA-binding transcriptional regulator)

HSP 1 Score: 132.5 bits (332), Expect = 1.5e-31
Identity = 67/107 (62.62%), Postives = 79/107 (73.83%), Query Frame = 1


Query: 1   MSASGKRKGDE----DDVSEGDAPPSKTFKK--DSDDTDEIVVCELSKNRRVMVRNWQGK 60
           MS+ GKRK ++    DD SE  AP  K  K   DSD +D+IVVC +SKNRRV VRNW GK
Sbjct: 1   MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61  IVVDIREFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENS 102
           I +DIREFYVKDGK +PGKKGISLS+DQWN L NH E+I+KA+++ S
Sbjct: 61  IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107

[Close]

BLAST of Csa4G496770 vs. TAIR10
Match: AT5G09240.2 (AT5G09240.2 ssDNA-binding transcriptional regulator)

HSP 1 Score: 88.2 bits (217), Expect = 3.3e-18
Identity = 57/137 (41.61%), Postives = 72/137 (52.55%), Query Frame = 1


Query: 1   MSASGKRK------GDEDDVSEGDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGK 60
           MS +GKRK       D+ D SE  APP K   K +D+ ++I +C L KNRRV VRN  G+
Sbjct: 1   MSENGKRKDEDVRASDDRDESETHAPPKKV-AKPADEIEDIFICNLDKNRRVFVRNCNGR 60

Query: 61  IVVDIREFYVKDGKQMP--GKKGISLSLD----------------------------QWN 102
           I + IR+F+VKDG  +P   K+GISLSL+                            QWN
Sbjct: 61  IWIAIRQFFVKDGITLPCNSKQGISLSLEQVFTSLFHCLCLPHVHMSCLLHETFFLMQWN 120

[Close]

BLAST of Csa4G496770 vs. TAIR10
Match: AT4G10920.1 (AT4G10920.1 transcriptional coactivator p15 (PC4) family protein (KELP))

HSP 1 Score: 74.3 bits (181), Expect = 4.9e-14
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 1


Query: 27  KDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVL 86
           K+ DD  ++++C LS  RRV ++ ++GK +V IRE+Y KDGK++P  KGISL+ +QW+  
Sbjct: 88  KEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLTDEQWSTF 147

Query: 87  LNHVEEIDKAVNENSS 103
             ++  I+ AV +  S
Sbjct: 148 KKNMPAIENAVKKMES 163

[Close]

BLAST of Csa4G496770 vs. NCBI nr
Match: gi|449457317|ref|XP_004146395.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 1.9e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 1   MSASGKRKGDEDDVSEGDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIR 60
           MSASGKRKGDEDDVSEGDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSASGKRKGDEDDVSEGDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENSSGD 105
           EFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENSSGD
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENSSGD 104

[Close]

BLAST of Csa4G496770 vs. NCBI nr
Match: gi|659083009|ref|XP_008442140.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-48
Identity = 98/104 (94.23%), Postives = 99/104 (95.19%), Query Frame = 1


Query: 1   MSASGKRKGDEDDVSEGDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIR 60
           MSASGKRK DED VSEGDAPPSKTF+KD DD DEIVVCELSKNRRVMVR WQGKIVVDIR
Sbjct: 1   MSASGKRKDDEDRVSEGDAPPSKTFRKDPDDADEIVVCELSKNRRVMVRKWQGKIVVDIR 60

Query: 61  EFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENSSGD 105
           EFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENSSGD
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENSSGD 104

[Close]

BLAST of Csa4G496770 vs. NCBI nr
Match: gi|1021557512|ref|XP_016170076.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Arachis ipaensis])

HSP 1 Score: 156.8 bits (395), Expect = 2.1e-35
Identity = 80/111 (72.07%), Postives = 89/111 (80.18%), Query Frame = 1


Query: 1   MSASGKRKGDEDDVS----EGDAPPSKTFKK------DSDDTDEIVVCELSKNRRVMVRN 60
           MS+ GKRK ++D+ S    EG APP KT K       DS+D D IVVCE+SKNRRV VRN
Sbjct: 58  MSSKGKRKEEQDNASDADSEGHAPPKKTSKTATTTNADSEDPDSIVVCEISKNRRVSVRN 117

Query: 61  WQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENS 102
           WQGKIVVDIREFYVKDGKQ+PGKKGISL++DQWNVL NHVEEIDKAV ENS
Sbjct: 118 WQGKIVVDIREFYVKDGKQLPGKKGISLTMDQWNVLRNHVEEIDKAVTENS 168

[Close]

BLAST of Csa4G496770 vs. NCBI nr
Match: gi|1012228058|ref|XP_015937612.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Arachis duranensis])

HSP 1 Score: 156.4 bits (394), Expect = 2.8e-35
Identity = 79/111 (71.17%), Postives = 89/111 (80.18%), Query Frame = 1


Query: 1   MSASGKRKGDEDDVSEGD----APPSKTFKK------DSDDTDEIVVCELSKNRRVMVRN 60
           MS+ GKRK + D+ S+GD    APP KT K       DS+D D IVVCE+SKNRRV VRN
Sbjct: 1   MSSKGKRKEEHDNASDGDSEGHAPPKKTSKTATTTNADSEDPDSIVVCEISKNRRVSVRN 60

Query: 61  WQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENS 102
           WQG+IVVDIREFYVKDGKQ+PGKKGISL++DQWNVL NHVEEIDKAV ENS
Sbjct: 61  WQGRIVVDIREFYVKDGKQLPGKKGISLTMDQWNVLRNHVEEIDKAVTENS 111

[Close]

BLAST of Csa4G496770 vs. NCBI nr
Match: gi|694406930|ref|XP_009378234.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Pyrus x bretschneideri])

HSP 1 Score: 154.8 bits (390), Expect = 8.1e-35
Identity = 77/107 (71.96%), Postives = 87/107 (81.31%), Query Frame = 1


Query: 1   MSASGKRKGDEDDVSEGDA----PPSKTFKKD--SDDTDEIVVCELSKNRRVMVRNWQGK 60
           MS  GKRK ++D  SEGD+    PP K  K+D  SD +D+I VCE+SKNRRV VRNW GK
Sbjct: 1   MSWRGKRKDEDDHASEGDSEGHEPPKKASKRDTDSDSSDDITVCEISKNRRVSVRNWNGK 60

Query: 61  IVVDIREFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENS 102
           +VVDIREFYVKDGKQMPGKKGISL++DQWNVL NHVEEIDKAVNE S
Sbjct: 61  VVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHVEEIDKAVNETS 107

The following BLAST results are available for this feature:

BLAST of Csa4G496770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
KIWI_ARATH	2.7e-30	62.62	RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KI...	[more]
KELP_ARATH	8.7e-13	42.11	RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KE...	[more]
TCP4_CHICK	4.1e-10	38.10	Activated RNA polymerase II transcriptional coactivator p15 OS=Gallus gallus GN=...	[more]
TCP4_RAT	9.0e-10	35.71	Activated RNA polymerase II transcriptional coactivator p15 OS=Rattus norvegicus...	[more]
TCP4_MOUSE	1.2e-09	35.71	Activated RNA polymerase II transcriptional coactivator p15 OS=Mus musculus GN=S...	[more]

BLAST of Csa4G496770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2F1_CUCSA	1.3e-52	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G496770 PE=4 SV=1	[more]
V7AVU6_PHAVU	1.6e-34	73.33	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G154400g PE=4 SV=1	[more]
I3SIW1_LOTJA	2.1e-34	72.38	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
I1KBM5_SOYBN	2.8e-34	71.43	Uncharacterized protein OS=Glycine max GN=GLYMA_06G155900 PE=4 SV=1	[more]
A0A0B2PPL3_GLYSO	2.8e-34	71.43	RNA polymerase II transcriptional coactivator KIWI OS=Glycine soja GN=glysoja_01...	[more]

BLAST of Csa4G496770 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09250.1	1.5e-31	62.62	ssDNA-binding transcriptional regulator	[more]
AT5G09240.2	3.3e-18	41.61	ssDNA-binding transcriptional regulator	[more]
AT4G10920.1	4.9e-14	42.11	transcriptional coactivator p15 (PC4) family protein (KELP)	[more]

BLAST of Csa4G496770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457317\|ref\|XP_004146395.1\|	1.9e-52	100.00	PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumi...	[more]
gi\|659083009\|ref\|XP_008442140.1\|	1.7e-48	94.23	PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumi...	[more]
gi\|1021557512\|ref\|XP_016170076.1\|	2.1e-35	72.07	PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Arachis ipae...	[more]
gi\|1012228058\|ref\|XP_015937612.1\|	2.8e-35	71.17	PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Arachis dura...	[more]
gi\|694406930\|ref\|XP_009378234.1\|	8.1e-35	71.96	PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Pyrus x bret...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003173	PC4
IPR009044	ssDNA-bd_transcriptional_reg

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003713	transcription coactivator activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0007034	vacuolar transport
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003713	transcription coactivator activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU092634	cucumber EST collection version 3.0	transcribed_cluster
CU094413	cucumber EST collection version 3.0	transcribed_cluster
CU103641	cucumber EST collection version 3.0	transcribed_cluster
CU131419	cucumber EST collection version 3.0	transcribed_cluster
CU158786	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G496770.1	Csa4G496770.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU103641	CU103641	transcribed_cluster
CU158786	CU158786	transcribed_cluster
CU131419	CU131419	transcribed_cluster
CU094413	CU094413	transcribed_cluster
CU092634	CU092634	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003173	Transcriptional coactivator p15 (PC4)	PFAM	PF02229	PC4	coord: 38..88 score: 7.6
IPR009044	ssDNA-binding transcriptional regulator	GENE3D	G3DSA:2.30.31.10		coord: 37..98 score: 3.4
IPR009044	ssDNA-binding transcriptional regulator	unknown	SSF54447	ssDNA-binding transcriptional regulator domain	coord: 37..98 score: 9.42
None	No IPR available	PANTHER	PTHR13215	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR	coord: 6..103 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G496770	Cla011659	Watermelon (97103) v1	cuwmB333
Csa4G496770	MELO3C008937	Melon (DHL92) v3.5.1	cumeB326
Csa4G496770	ClCG04G001940	Watermelon (Charleston Gray)	cuwcgB296
Csa4G496770	Lsi01G019930	Bottle gourd (USVL1VR-Ls)	culsiB250
Csa4G496770	MELO3C008937.2	Melon (DHL92) v3.6.1	cumedB312
Csa4G496770	Cla97C04G069680	Watermelon (97103) v2	cuwmbB293
Csa4G496770	Bhi03G002290	Wax gourd	cuwgoB394
Csa4G496770	CSPI04G20010	Wild cucumber (PI 183967)	cpicuB181
Csa4G496770	Cucsa.353820	Cucumber (Gy14) v1	cgycuB499
Csa4G496770	CmaCh07G012750	Cucurbita maxima (Rimu)	cmacuB862
Csa4G496770	CmoCh07G013130	Cucurbita moschata (Rifu)	cmocuB850
Csa4G496770	Cp4.1LG19g00990	Cucurbita pepo (Zucchini)	cpecuB499
Csa4G496770	CsGy4G019070	Cucumber (Gy14) v2	cgybcuB173
Csa4G496770	Carg12700	Silver-seed gourd	carcuB0311

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G496770	Watermelon (Charleston Gray)	cuwcgB306
Csa4G496770	Cucurbita pepo (Zucchini)	cpecuB073
Csa4G496770	Watermelon (97103) v2	cuwmbB303
Csa4G496770	Wax gourd	cuwgoB398
Csa4G496770	Cucurbita maxima (Rimu)	cmacuB665