CmoCh07G013130 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G013130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Coactivator-p15 transcription factor) (RNA polymerase II transcriptional coactivator KIWI)
Location	Cmo_Chr07 : 7359187 .. 7363277 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCGCTCATTTGCAGTTGCAAAGTGTTGAAGAGCACAGTCGGTCGCAAAATTACAGCGAAAAAGGAGGAAGAGATGTCTGCAAGAGGAAAGCGAAAGGACGATGAAGACCACGCATCCGAAGGAGATGCTCCTCCGAAGAAGACATTGAAGAAAGATTCCGAAGAAACCGACGAAATCGTCGTCTGCGAGGTTCTTCATTTCTCTTCCTTCTTCTGTTCTTAGTGTCTTTTCCTTGCTTTCAACACTTTAAATGTTTTTGAAATGTAGATTTCGAAGAACCGTAGAGTTATGGTCAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGTGAGTTTTATGTCAAAGATGGAAAGGAAATGCCTGGAAAAAAAGGTTCATCTCACCATCGTCTTCTTTTCTCTCTCTCTCTCTTTCTTTCGCAGTTGATGAATTCGCCTTTCGTTTTGGATTTCTAGTTTGTGGCTTTTCTAGGGTTCATGTTCCACTTTGTGACTTTTATCGTCTTTCATTTCAGTAGCATTTGCCTGGATTTTATTTATTTATTTATTATTTTTTCTTACGTTTTTTTTTTATTTTTCTTTCTACAATTTGAGATAGATGTTAGGGAAATGATCGAAAACTGCATCTATGACTTCACTATGGGGTGTTTGGTTCAAAGTGAATAGGAATTTTGTTTTGGATGTTTGTATGTAAGCTTATGAAGTTTGGTGTATCTATATTTCATTTTATAGAAAATTTCTTTCTTTGGCTTCTGTTATGGCAAAACTTAGTGAGGTTTCAAAATTATTTTGTTTAAAATTTTGTTTTGCTTATACTTTTCTTATGTAGTTTATGTAAATAGTTTGTTGGCAACATTTAAGGAAGAACGAATATAAAGAGGATGAAAGAATAGATATTAAAGAGCTGGGTGAAGGATTTGAAGGAAAAAAGTACGGAGGGTGAAGAAGAGACTTGAGCGTGTTCAAATTTGCTGGAAACATATCATTGTTGTAACAAGACGTCAATTTCACGATGATTGATACAATATTAAGGAACCTTAAGGAGGTTTATGCATGAAGATTGCATATTTAGTCCTCTCACAGTGGCCAAAGCTTTCCTGAGAGGGGTAGTCAAGGAGGAGTTAGAGGAACTTTATAAGATATAGATGAAGGGTGGAGGATAGTGGGGGCTTTCTCACCCAAGTATGAGAGGTGGGACGCTGGAAAACACGGTTAGGTCAAAGTAATGCCATGCTATGGGGGATGCGTTAAGCTTCATGAATACCTTTGATGTTATGACAAGAAGAGATTTTATGAATATGTTAGATTGCTTGGAGGCTGTTATAAAACTATTGTTGCTTCTCCCCTTTGAAACTGAGATTGTGTATCCTAAAGAAGGAAGCTTTGTCGTTCAAATAGTTGTAAATCAATCATCAAGATTGTTAGTTGGTAGAGTGAGGAGTGCCCATGGAGGTTTTTGAACATAAGCAACTACTAATTTCTAGGTGGTTTGTTTGGGTAGAATAACTGGTGTTGAAACTTCAATTGAAGCAGTAGTAGAAGGTTGGCCAAACAAGTTTTTTCACAATTCATGCTGATAACATGGGGTTTTAAATGAGAGATAATTTTGTTGTTGAAGATGAGTTAAACAAGTTGCTGTTGGAGGAGAAGGTGAAACGTCTCGGTTTTGAAGAAGAAGAGAATGAGTTGTTTAAAAATAAATACTTTGCTAATTTGATTGAAGATGTTGGAAGAGGAAAAGTCATATGTTTATGAGCTTGTATGGAAGATGAAGTTTAAGTGTGTTTCAGGTGGTGGTTTAAAGGGTTCAAGAAAAAAAAATTTCTAGATTGCTATTGCGTTGGGTTTTCCTTTGTTCTCCTAATGGAATGTTTGGAAGCTCTTGGTTTCATTTTTTTTTTATAAATGCTAACTTACCATGATCTATATTATTGACATGACGTTGCATATAATACTGCAAATGTAGAAGTTGAGTATGTCTTTTGATTTTCTTTTTGTTTACAGGCATCTCGCTATCCTTGGATCAGGTGTTGTGCACTTCTACTTTCTTAAAATTTTCAATTTTCAATTCTGTTATTAAAAACAATTAACTTTTCTATTTTCTTTAATCGTCGTCTTTCTGCAGTGGAACGTTCTTCGAAATCACGTAGAAGAAATCGACAAAGCTGTTAATGAAAATTCGTGAGGAAATTAAATCAGGCGTCTTTTGTTGAGGACGGAAATATGACCTTTTGTACAGCTAATGGACTTGTTTTTGTGGGCATGAAGACCAAAGAGCAGGTATTAGCTTTTATATCTACATTAACTGCATCACTTGGATTGACATTTTGATATTGTAGACCAGAAACATGATATTATAACATATTATGGCATAACTGACAATATTACTTTTCTCAATTAGTAGATAATTGAGTATCAAGTTAGCATTTTCTAGATTTAGAGATCCTTAGTCCAAGGTGCTAACTACTTAAGAGTTAGAACTTTTCTGCCGTAAAATTAAGTACCTAATCATTACATATTTAGCTTCAGTGCCCTCAGTTCTTGAGCCCACAAGGTGTAGCTTGAGTTCTTTGCAACCACATCTTTAGAAACCTCCTTTCTTTCAACCAATCCTCTGGCATACCTTTCAAAGTTCTCCAGACTTCTCCAGACTGGAGCCAACTTTCTCACATCTCCTTCACATTTAATAATCTCAAGCATGTCTTTGGCTTCCTCCAACCTTGCCCAAAAGCATGAATCTTGAGTCAGACCTGCGTATTTCGTCCTCTGAGTATTCCCTTTGTCTGCAGCGTCGCTCCCTCTCCACCATTTGTCGAAAATCTCGTATCTTCTGTCTCTTCCATGCTTTAAGTAATGCCCATGAGCAATGTGCTTGCCACGGCAGTAATATTCTGCTATGTCTAATGGCTCTACTAGGAGTTTGTAGAAATGCGAAGCATTGATCCACTTCGCTCTTAAGTTGAAATCTGGAGGAAGCTCATTGTTCTCCCACATGTTGATCACTCGGTTCCAGAACGTCGCAAGCTTGTGTCTGTTCATGTTCACTCTAGCATGTTTTACTGAAGTATTTACTTGCTTGAAACAATCATAGTACCCCAATTGGTCACCTGCTTCATCACAAGAGGCTTTATACCATTCTATCTCAGCCCTGTAAGGCGTAATCTTAGATAAGCTTACAGCCAGTTTCGCTGCGTTCAAGTTCGGCGTTTGTCCCATTCTCCTGGCCGTCCTCAAGCTATTTTCAGCCATTCGAGCCACTTCATCCTGCAATTTTGAAATACTAAGTTTTCTTCTTCTCACAAACCAATAAGTTCTGTTATAAGAAAGGGAAGTTGAGAACTTTTATTACTTGGAAAGGTATTCCTGAGGACTGCAATGCTAGAGCCAGCCCTGCTTCATAGCTCGAATTAGGAAGACGCTCGGAGGAGAAGTTTTTCCTCTCCATGTGTTGAACTCCAACTTTTTTCACATAATCTCCATAGTTGAGATGATCCTCAATGCTCATGTTTGGAACACTTGTTTTGAGCAACAAATAGAGCATCTTCAGAACTGATATAGCATTGTCCAAACAAATTGCCCCATTTTCTGAGCAAAAGAAGAAGTTCCCAAATGGCCAAAACTGACTTCGTAGCGACTCCTCTTCTGAGTTAGATATCGTGTTAGAGTGAGCCAATACAACCCGAAAGAGCTCGTCTTTCTCTTTATCTGACAGTTGGGTAGCAAGCTTCCCAAACTGCAGAGAGGCCAGCGACAAATGCCAGTATCTAAGGAGAACATGGAGCTGGGAAGAGAGGGAGGAGGAAAGCGGAGTAGAGAGAAGCCTCGGCATAATGTCGTGGTTTGAGACTACGTGACAGAAGTTGCCACACCATCGTTCTCTAAGAATAGCTCTCGAAAGCGACTCGTTGCCGATCAACGGGGAGCCAAAGGTGATGCATAACAAAGGGTGGTGCGTGGTTTTGGAATGAAAGAGAGAGAGCAGCCAAAGAGTACATAGAGAGGCTGCTGCCCCTCCAAGTGAATGGCCTGTAATCACTATTGACTTACTTTTCTCCATTACCTTTGTCATCTGCAACAGATAAGATCGCAA

mRNA sequence

CGCGCTCATTTGCAGTTGCAAAGTGTTGAAGAGCACAGTCGGTCGCAAAATTACAGCGAAAAAGGAGGAAGAGATGTCTGCAAGAGGAAAGCGAAAGGACGATGAAGACCACGCATCCGAAGGAGATGCTCCTCCGAAGAAGACATTGAAGAAAGATTCCGAAGAAACCGACGAAATCGTCGTCTGCGAGATTTCGAAGAACCGTAGAGTTATGGTCAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGTGAGTTTTATGTCAAAGATGGAAAGGAAATGCCTGGAAAAAAAGGCATCTCGCTATCCTTGGATCAGTGGAACGTTCTTCGAAATCACGTAGAAGAAATCGACAAAGCTGTTAATGAAAATTCGTGAGGAAATTAAATCAGGCGTCTTTTGTTGAGGACGGAAATATGACCTTTTGTACAGCTAATGGACTTGTTTTTGTGGGCATGAAGACCAAAGAGCAGGTATTAGCTTTTATATCTACATTAACTGCATCACTTGGATTGACATTTTGATATTGTAGACCAGAAACATGATATTATAACATATTATGGCATAACTGACAATATTACTTTTCTCAATTAGTAGATAATTGAGTATCAAGTTAGCATTTTCTAGATTTAGAGATCCTTAGTCCAAGGTGCTAACTACTTAAGAGTTAGAACTTTTCTGCCGTAAAATTAAGTACCTAATCATTACATATTTAGCTTCAGTGCCCTCAGTTCTTGAGCCCACAAGGTGTAGCTTGAGTTCTTTGCAACCACATCTTTAGAAACCTCCTTTCTTTCAACCAATCCTCTGGCATACCTTTCAAAGTTCTCCAGACTTCTCCAGACTGGAGCCAACTTTCTCACATCTCCTTCACATTTAATAATCTCAAGCATGTCTTTGGCTTCCTCCAACCTTGCCCAAAAGCATGAATCTTGAGTCAGACCTGCGTATTTCGTCCTCTGAGTATTCCCTTTGTCTGCAGCGTCGCTCCCTCTCCACCATTTGTCGAAAATCTCGTATCTTCTGTCTCTTCCATGCTTTAAGTAATGCCCATGAGCAATGTGCTTGCCACGGCAGTAATATTCTGCTATGTCTAATGGCTCTACTAGGAGTTTGTAGAAATGCGAAGCATTGATCCACTTCGCTCTTAAGTTGAAATCTGGAGGAAGCTCATTGTTCTCCCACATGTTGATCACTCGGTTCCAGAACGTCGCAAGCTTGTGTCTGTTCATGTTCACTCTAGCATGTTTTACTGAAGTATTTACTTGCTTGAAACAATCATAGTACCCCAATTGGTCACCTGCTTCATCACAAGAGGCTTTATACCATTCTATCTCAGCCCTGTAAGGCGTAATCTTAGATAAGCTTACAGCCAGTTTCGCTGCGTTCAAGTTCGGCGTTTGTCCCATTCTCCTGGCCGTCCTCAAGCTATTTTCAGCCATTCGAGCCACTTCATCCTGCAATTTTGAAATACTAAGTTTTCTTCTTCTCACAAACCAATAAGTTCTGTTATAAGAAAGGGAAGTTGAGAACTTTTATTACTTGGAAAGGTATTCCTGAGGACTGCAATGCTAGAGCCAGCCCTGCTTCATAGCTCGAATTAGGAAGACGCTCGGAGGAGAAGTTTTTCCTCTCCATGTGTTGAACTCCAACTTTTTTCACATAATCTCCATAGTTGAGATGATCCTCAATGCTCATGTTTGGAACACTTGTTTTGAGCAACAAATAGAGCATCTTCAGAACTGATATAGCATTGTCCAAACAAATTGCCCCATTTTCTGAGCAAAAGAAGAAGTTCCCAAATGGCCAAAACTGACTTCGTAGCGACTCCTCTTCTGAGTTAGATATCGTGTTAGAGTGAGCCAATACAACCCGAAAGAGCTCGTCTTTCTCTTTATCTGACAGTTGGGTAGCAAGCTTCCCAAACTGCAGAGAGGCCAGCGACAAATGCCAGTATCTAAGGAGAACATGGAGCTGGGAAGAGAGGGAGGAGGAAAGCGGAGTAGAGAGAAGCCTCGGCATAATGTCGTGGTTTGAGACTACGTGACAGAAGTTGCCACACCATCGTTCTCTAAGAATAGCTCTCGAAAGCGACTCGTTGCCGATCAACGGGGAGCCAAAGGTGATGCATAACAAAGGGTGGTGCGTGGTTTTGGAATGAAAGAGAGAGAGCAGCCAAAGAGTACATAGAGAGGCTGCTGCCCCTCCAAGTGAATGGCCTGTAATCACTATTGACTTACTTTTCTCCATTACCTTTGTCATCTGCAACAGATAAGATCGCAA

Coding sequence (CDS)

ATGTCTGCAAGAGGAAAGCGAAAGGACGATGAAGACCACGCATCCGAAGGAGATGCTCCTCCGAAGAAGACATTGAAGAAAGATTCCGAAGAAACCGACGAAATCGTCGTCTGCGAGATTTCGAAGAACCGTAGAGTTATGGTCAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGTGAGTTTTATGTCAAAGATGGAAAGGAAATGCCTGGAAAAAAAGGCATCTCGCTATCCTTGGATCAGTGGAACGTTCTTCGAAATCACGTAGAAGAAATCGACAAAGCTGTTAATGAAAATTCGTGA

Homology

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BLAST of CmoCh07G013130 vs. Swiss-Prot
Match: KIWI_ARATH (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.0e-31
Identity = 70/107 (65.42%), Postives = 85/107 (79.44%), Query Frame = 1


Query: 1   MSARGKRKDDE----DHASEGDAPPKKTLKK--DSEETDEIVVCEISKNRRVMVRNWQGK 60
           MS+RGKRKD++    D  SE  AP KK  K   DS+++D+IVVC ISKNRRV VRNW GK
Sbjct: 1   MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61  IVVDIREFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           I +DIREFYVKDGK +PGKKGISLS+DQWN LRNH E+I+KA+++ S
Sbjct: 61  IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107

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BLAST of CmoCh07G013130 vs. Swiss-Prot
Match: KELP_ARATH (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-11
Identity = 35/92 (38.04%), Postives = 60/92 (65.22%), Query Frame = 1


Query: 8   KDDEDHASEGDAPPKKTLKKDSEETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDG 67
           K++ED    GD    K   K+ ++  ++++C +S  RRV ++ ++GK +V IRE+Y KDG
Sbjct: 74  KEEED----GDKDCGKG-NKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDG 133

Query: 68  KEMPGKKGISLSLDQWNVLRNHVEEIDKAVNE 100
           KE+P  KGISL+ +QW+  + ++  I+ AV +
Sbjct: 134 KELPTSKGISLTDEQWSTFKKNMPAIENAVKK 160

[Close]

BLAST of CmoCh07G013130 vs. Swiss-Prot
Match: TCP4_MOUSE (Activated RNA polymerase II transcriptional coactivator p15 OS=Mus musculus GN=Sub1 PE=1 SV=3)

HSP 1 Score: 64.3 bits (155), Expect = 8.7e-10
Identity = 30/74 (40.54%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 27  KDSEETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-KDGKEMPGKKGISLSLDQWNV 86
           K S  + +  + +I K R V VR+++GKI++DIRE+++  +G+  PG+KGISL+++QW+ 
Sbjct: 53  KQSSSSRDDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQ 112

Query: 87  LRNHVEEIDKAVNE 100
           L+  + +ID AV +
Sbjct: 113 LKEQISDIDDAVRK 126

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BLAST of CmoCh07G013130 vs. Swiss-Prot
Match: TCP4_RAT (Activated RNA polymerase II transcriptional coactivator p15 OS=Rattus norvegicus GN=Sub1 PE=1 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-09
Identity = 31/84 (36.90%), Postives = 56/84 (66.67%), Query Frame = 1


Query: 17  GDAPPKKTLKKDSEETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-KDGKEMPGKKG 76
           G++       K S  + +  + +I K R V VR+++GKI++DIRE+++  +G+  PG+KG
Sbjct: 43  GESSRALASSKQSSSSRDDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKG 102

Query: 77  ISLSLDQWNVLRNHVEEIDKAVNE 100
           ISL+++QW+ L+  + +ID AV +
Sbjct: 103 ISLNMEQWSQLKEQISDIDDAVRK 126

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BLAST of CmoCh07G013130 vs. Swiss-Prot
Match: TCP4_CHICK (Activated RNA polymerase II transcriptional coactivator p15 OS=Gallus gallus GN=SUB1 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-09
Identity = 34/94 (36.17%), Postives = 61/94 (64.89%), Query Frame = 1


Query: 7   RKDDEDHASEGDAPPKKTLKKDSEETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-K 66
           +K     +S+G A  K++  +D        + +I K R V VR+++GK+++DIRE+++ +
Sbjct: 38  KKQKTGESSKGAASSKQSSNRDEN------MFQIGKMRYVSVRDFKGKVLIDIREYWMDQ 97

Query: 67  DGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNE 100
           +G+  PG+KGISL+ +QWN L+  + +ID AV +
Sbjct: 98  EGEMKPGRKGISLNPEQWNQLKEQISDIDDAVRK 125

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BLAST of CmoCh07G013130 vs. TrEMBL
Match: A0A0A0L2F1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G496770 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.2e-43
Identity = 90/101 (89.11%), Postives = 94/101 (93.07%), Query Frame = 1


Query: 1   MSARGKRKDDEDHASEGDAPPKKTLKKDSEETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSA GKRK DED  SEGDAPP KT KKDS++TDEIVVCE+SKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSASGKRKGDEDDVSEGDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           EFYVKDGK+MPGKKGISLSLDQWNVL NHVEEIDKAVNENS
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENS 101

[Close]

BLAST of CmoCh07G013130 vs. TrEMBL
Match: M5WID1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013716mg PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.4e-36
Identity = 81/107 (75.70%), Postives = 91/107 (85.05%), Query Frame = 1


Query: 1   MSARGKRKDDEDHASEGD----APPKKTLKKDS--EETDEIVVCEISKNRRVMVRNWQGK 60
           MS RGKRKD+EDHAS+GD    APPKKT K+DS  + +DEI+ CEISKNRRV VRNW GK
Sbjct: 1   MSWRGKRKDEEDHASDGDSEGHAPPKKTCKRDSADDNSDEIIACEISKNRRVTVRNWNGK 60

Query: 61  IVVDIREFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           I+VDIREFYVKDGK+MPGKKGISL+ DQW+VL NHVEEIDKAVN  S
Sbjct: 61  IMVDIREFYVKDGKQMPGKKGISLTKDQWDVLHNHVEEIDKAVNGTS 107

[Close]

BLAST of CmoCh07G013130 vs. TrEMBL
Match: I3SIW1_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 8.4e-36
Identity = 80/105 (76.19%), Postives = 92/105 (87.62%), Query Frame = 1


Query: 1   MSARGKRKDDEDHASEGD----APPKKTLKKDSEET-DEIVVCEISKNRRVMVRNWQGKI 60
           MS +GK++DD D AS+ D    APPKK+LKKDS+E  D IVVCEISKNRRV VRNWQG+I
Sbjct: 1   MSGKGKKRDDLDRASDADSDSHAPPKKSLKKDSDEDPDSIVVCEISKNRRVSVRNWQGRI 60

Query: 61  VVDIREFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNEN 101
           VVDI EFYVKDGK+MPGKKGISL++DQWNVLRNH+EEIDKAVNE+
Sbjct: 61  VVDILEFYVKDGKQMPGKKGISLTMDQWNVLRNHIEEIDKAVNES 105

[Close]

BLAST of CmoCh07G013130 vs. TrEMBL
Match: V7AVU6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G154400g PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-35
Identity = 80/105 (76.19%), Postives = 93/105 (88.57%), Query Frame = 1


Query: 1   MSARGKRKDDE---DHASEGDAPPKKTLKKDSE-ETDEIVVCEISKNRRVMVRNWQGKIV 60
           MS + KR+D++   D  SEG APPKKTLK+DS+ E+D IVVCEISKNRRV VRNWQG+IV
Sbjct: 1   MSGKAKRRDEDGASDADSEGHAPPKKTLKRDSDDESDSIVVCEISKNRRVSVRNWQGRIV 60

Query: 61  VDIREFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           VDIREFY+KDGK+MPGKKGISL++DQWNVLR HVEEIDKAV+ENS
Sbjct: 61  VDIREFYLKDGKKMPGKKGISLTMDQWNVLRTHVEEIDKAVSENS 105

[Close]

BLAST of CmoCh07G013130 vs. TrEMBL
Match: A0A0B2PPL3_GLYSO (RNA polymerase II transcriptional coactivator KIWI OS=Glycine soja GN=glysoja_011908 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 9.3e-35
Identity = 77/105 (73.33%), Postives = 91/105 (86.67%), Query Frame = 1


Query: 1   MSARGKRKDDE---DHASEGDAPPKKTLKKDSEET-DEIVVCEISKNRRVMVRNWQGKIV 60
           MS + KR+DD+   D  SEG APPKK+LKKDS++  D I VCEISKNRRV VRNW+G I+
Sbjct: 1   MSGKAKRRDDDGASDADSEGHAPPKKSLKKDSDDDPDSITVCEISKNRRVAVRNWKGSIM 60

Query: 61  VDIREFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           VDIREFYVKDGK++PG+KGISL++DQWNVLRNHVEEIDKA+NENS
Sbjct: 61  VDIREFYVKDGKQLPGRKGISLTMDQWNVLRNHVEEIDKAINENS 105

[Close]

BLAST of CmoCh07G013130 vs. TAIR10
Match: AT5G09250.1 (AT5G09250.1 ssDNA-binding transcriptional regulator)

HSP 1 Score: 135.2 bits (339), Expect = 2.3e-32
Identity = 70/107 (65.42%), Postives = 85/107 (79.44%), Query Frame = 1


Query: 1   MSARGKRKDDE----DHASEGDAPPKKTLKK--DSEETDEIVVCEISKNRRVMVRNWQGK 60
           MS+RGKRKD++    D  SE  AP KK  K   DS+++D+IVVC ISKNRRV VRNW GK
Sbjct: 1   MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61  IVVDIREFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           I +DIREFYVKDGK +PGKKGISLS+DQWN LRNH E+I+KA+++ S
Sbjct: 61  IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107

[Close]

BLAST of CmoCh07G013130 vs. TAIR10
Match: AT5G09240.2 (AT5G09240.2 ssDNA-binding transcriptional regulator)

HSP 1 Score: 87.0 bits (214), Expect = 7.0e-18
Identity = 58/137 (42.34%), Postives = 77/137 (56.20%), Query Frame = 1


Query: 1   MSARGKRKDDEDHAS------EGDAPPKKTLKKDSEETDEIVVCEISKNRRVMVRNWQGK 60
           MS  GKRKD++  AS      E  APPKK + K ++E ++I +C + KNRRV VRN  G+
Sbjct: 1   MSENGKRKDEDVRASDDRDESETHAPPKK-VAKPADEIEDIFICNLDKNRRVFVRNCNGR 60

Query: 61  IVVDIREFYVKDGKEMP--GKKGISLSLD----------------------------QWN 102
           I + IR+F+VKDG  +P   K+GISLSL+                            QWN
Sbjct: 61  IWIAIRQFFVKDGITLPCNSKQGISLSLEQVFTSLFHCLCLPHVHMSCLLHETFFLMQWN 120

[Close]

BLAST of CmoCh07G013130 vs. TAIR10
Match: AT4G10920.1 (AT4G10920.1 transcriptional coactivator p15 (PC4) family protein (KELP))

HSP 1 Score: 68.9 bits (167), Expect = 2.0e-12
Identity = 35/92 (38.04%), Postives = 60/92 (65.22%), Query Frame = 1


Query: 8   KDDEDHASEGDAPPKKTLKKDSEETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDG 67
           K++ED    GD    K   K+ ++  ++++C +S  RRV ++ ++GK +V IRE+Y KDG
Sbjct: 74  KEEED----GDKDCGKG-NKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDG 133

Query: 68  KEMPGKKGISLSLDQWNVLRNHVEEIDKAVNE 100
           KE+P  KGISL+ +QW+  + ++  I+ AV +
Sbjct: 134 KELPTSKGISLTDEQWSTFKKNMPAIENAVKK 160

[Close]

BLAST of CmoCh07G013130 vs. NCBI nr
Match: gi|449457317|ref|XP_004146395.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 4.6e-43
Identity = 90/101 (89.11%), Postives = 94/101 (93.07%), Query Frame = 1


Query: 1   MSARGKRKDDEDHASEGDAPPKKTLKKDSEETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSA GKRK DED  SEGDAPP KT KKDS++TDEIVVCE+SKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSASGKRKGDEDDVSEGDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           EFYVKDGK+MPGKKGISLSLDQWNVL NHVEEIDKAVNENS
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENS 101

[Close]

BLAST of CmoCh07G013130 vs. NCBI nr
Match: gi|659083009|ref|XP_008442140.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 8.6e-42
Identity = 87/101 (86.14%), Postives = 92/101 (91.09%), Query Frame = 1


Query: 1   MSARGKRKDDEDHASEGDAPPKKTLKKDSEETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSA GKRKDDED  SEGDAPP KT +KD ++ DEIVVCE+SKNRRVMVR WQGKIVVDIR
Sbjct: 1   MSASGKRKDDEDRVSEGDAPPSKTFRKDPDDADEIVVCELSKNRRVMVRKWQGKIVVDIR 60

Query: 61  EFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           EFYVKDGK+MPGKKGISLSLDQWNVL NHVEEIDKAVNENS
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENS 101

[Close]

BLAST of CmoCh07G013130 vs. NCBI nr
Match: gi|694406930|ref|XP_009378234.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Pyrus x bretschneideri])

HSP 1 Score: 162.5 bits (410), Expect = 3.7e-37
Identity = 82/107 (76.64%), Postives = 93/107 (86.92%), Query Frame = 1


Query: 1   MSARGKRKDDEDHASEGDA----PPKKTLKKD--SEETDEIVVCEISKNRRVMVRNWQGK 60
           MS RGKRKD++DHASEGD+    PPKK  K+D  S+ +D+I VCEISKNRRV VRNW GK
Sbjct: 1   MSWRGKRKDEDDHASEGDSEGHEPPKKASKRDTDSDSSDDITVCEISKNRRVSVRNWNGK 60

Query: 61  IVVDIREFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           +VVDIREFYVKDGK+MPGKKGISL++DQWNVLRNHVEEIDKAVNE S
Sbjct: 61  VVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHVEEIDKAVNETS 107

[Close]

BLAST of CmoCh07G013130 vs. NCBI nr
Match: gi|658047012|ref|XP_008359177.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Malus domestica])

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-36
Identity = 82/107 (76.64%), Postives = 92/107 (85.98%), Query Frame = 1


Query: 1   MSARGKRKDDEDHASEGD----APPKKTLKKD--SEETDEIVVCEISKNRRVMVRNWQGK 60
           MS RGKRKD++DHAS GD    APPKK  K+D  S+ +D+I VCEISKNRRV VRNW GK
Sbjct: 1   MSWRGKRKDEDDHASGGDSEGHAPPKKASKRDTDSDSSDDITVCEISKNRRVSVRNWNGK 60

Query: 61  IVVDIREFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           +VVDIREFYVKDGK+MPGKKGISL++DQWNVLRNHVEEIDKAVNE S
Sbjct: 61  VVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHVEEIDKAVNETS 107

[Close]

BLAST of CmoCh07G013130 vs. NCBI nr
Match: gi|694330280|ref|XP_009355849.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Pyrus x bretschneideri])

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-36
Identity = 80/105 (76.19%), Postives = 92/105 (87.62%), Query Frame = 1


Query: 1   MSARGKRKDDEDHASEGDA----PPKKTLKKDSEE--TDEIVVCEISKNRRVMVRNWQGK 60
           MS RGKRKD++DHAS+GD+    PPKK  KK+S +  +D+I VCEISKNRRV VRNW GK
Sbjct: 4   MSGRGKRKDEDDHASDGDSEGHPPPKKASKKNSSDDSSDDITVCEISKNRRVSVRNWNGK 63

Query: 61  IVVDIREFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNE 100
           +VVDIREFYVKDGK+MPGKKGISL++DQWNVLRNHVEEIDKAVNE
Sbjct: 64  VVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHVEEIDKAVNE 108

The following BLAST results are available for this feature:

BLAST of CmoCh07G013130 vs. Swiss-Prot


Match Name	E-value	Identity	Description
KIWI_ARATH	4.0e-31	65.42	RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KI...	[more]
KELP_ARATH	3.5e-11	38.04	RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KE...	[more]
TCP4_MOUSE	8.7e-10	40.54	Activated RNA polymerase II transcriptional coactivator p15 OS=Mus musculus GN=S...	[more]
TCP4_RAT	1.1e-09	36.90	Activated RNA polymerase II transcriptional coactivator p15 OS=Rattus norvegicus...	[more]
TCP4_CHICK	1.1e-09	36.17	Activated RNA polymerase II transcriptional coactivator p15 OS=Gallus gallus GN=...	[more]

BLAST of CmoCh07G013130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2F1_CUCSA	3.2e-43	89.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G496770 PE=4 SV=1	[more]
M5WID1_PRUPE	6.4e-36	75.70	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013716mg PE=4 SV=1	[more]
I3SIW1_LOTJA	8.4e-36	76.19	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
V7AVU6_PHAVU	1.4e-35	76.19	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G154400g PE=4 SV=1	[more]
A0A0B2PPL3_GLYSO	9.3e-35	73.33	RNA polymerase II transcriptional coactivator KIWI OS=Glycine soja GN=glysoja_01...	[more]

BLAST of CmoCh07G013130 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09250.1	2.3e-32	65.42	ssDNA-binding transcriptional regulator	[more]
AT5G09240.2	7.0e-18	42.34	ssDNA-binding transcriptional regulator	[more]
AT4G10920.1	2.0e-12	38.04	transcriptional coactivator p15 (PC4) family protein (KELP)	[more]

BLAST of CmoCh07G013130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457317\|ref\|XP_004146395.1\|	4.6e-43	89.11	PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumi...	[more]
gi\|659083009\|ref\|XP_008442140.1\|	8.6e-42	86.14	PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumi...	[more]
gi\|694406930\|ref\|XP_009378234.1\|	3.7e-37	76.64	PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Pyrus x bret...	[more]
gi\|658047012\|ref\|XP_008359177.1\|	1.1e-36	76.64	PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Malus domest...	[more]
gi\|694330280\|ref\|XP_009355849.1\|	1.4e-36	76.19	PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Pyrus x bret...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003173	PC4
IPR009044	ssDNA-bd_transcriptional_reg

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003713	transcription coactivator activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0007034	vacuolar transport
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003713	transcription coactivator activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G013130.1	CmoCh07G013130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003173	Transcriptional coactivator p15 (PC4)	PFAM	PF02229	PC4	coord: 38..88 score: 4.6
IPR009044	ssDNA-binding transcriptional regulator	GENE3D	G3DSA:2.30.31.10		coord: 37..98 score: 3.0
IPR009044	ssDNA-binding transcriptional regulator	unknown	SSF54447	ssDNA-binding transcriptional regulator domain	coord: 37..98 score: 1.41
None	No IPR available	PANTHER	PTHR13215	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR	coord: 6..101 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G013130	Cucsa.353820	Cucumber (Gy14) v1	cgycmoB0971
CmoCh07G013130	CmaCh07G012750	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G013130	Cla011659	Watermelon (97103) v1	cmowmB821
CmoCh07G013130	Csa4G496770	Cucumber (Chinese Long) v2	cmocuB850
CmoCh07G013130	MELO3C008937	Melon (DHL92) v3.5.1	cmomeB788
CmoCh07G013130	ClCG04G001990	Watermelon (Charleston Gray)	cmowcgB767
CmoCh07G013130	CSPI04G20010	Wild cucumber (PI 183967)	cmocpiB859
CmoCh07G013130	Lsi01G019930	Bottle gourd (USVL1VR-Ls)	cmolsiB776
CmoCh07G013130	Cp4.1LG19g00990	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G013130	MELO3C008937.2	Melon (DHL92) v3.6.1	cmomedB894
CmoCh07G013130	CsaV3_4G030720	Cucumber (Chinese Long) v3	cmocucB1001
CmoCh07G013130	Cla97C04G069680	Watermelon (97103) v2	cmowmbB865
CmoCh07G013130	Bhi03G002290	Wax gourd	cmowgoB1059
CmoCh07G013130	CsGy4G019070	Cucumber (Gy14) v2	cgybcmoB547
CmoCh07G013130	Carg12700	Silver-seed gourd	carcmoB0395

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G013130	Watermelon (97103) v2	cmowmbB869
CmoCh07G013130	Wax gourd	cmowgoB1068
CmoCh07G013130	Cucurbita moschata (Rifu)	cmocmoB461
CmoCh07G013130	Cucurbita maxima (Rimu)	cmacmoB674
CmoCh07G013130	Wild cucumber (PI 183967)	cmocpiB858
CmoCh07G013130	Cucumber (Chinese Long) v2	cmocuB849
CmoCh07G013130	Melon (DHL92) v3.5.1	cmomeB790
CmoCh07G013130	Melon (DHL92) v3.5.1	cmomeB795
CmoCh07G013130	Bottle gourd (USVL1VR-Ls)	cmolsiB780
CmoCh07G013130	Cucumber (Gy14) v2	cgybcmoB539