Carg12700 (gene) Silver-seed gourd

Overview
NameCarg12700
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRNA polymerase II transcriptional coactivator
LocationCucurbita_argyrosperma_scaffold_021 : 776353 .. 778718 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGGAGGAAGAGATGTCTGCAAGAGGAAAGCGAAAGGACGATGAAGACCACGCATCCGAAGGAGATGCTCCTCCGAAGAAGACATTTAAGAAAAATTCCGACGAAACCGACGAAATCGTCGTCTGCGAGGTTCTTCATTTCTCTTCCTCCTTCTGTTCTTAGTGTCTTTTCCTCGCTTTCAACACTTTTAAATGTTTTTGAAATGTAGATTTCGAAGAACCGTAGAGTTATGGTGAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGGAAATGCCTGGAAAAAAAGGTTCATCTCATCATCGTCTTCTTTTCTCTCTCTCTCTTTCTTTCGCAGTTGATGAATTCGACTTTCGTTTTGGATTTCTAGTTTGCGGCTTTTCTAGGGTTCATGTTCCACTTTGTGATTTTTATCGTCATCCATTTCAGTAGCATTTGCCTGGATTTTATTTATTATTTTTTCTTACGTTTTTTTTTTAAATTTATTTTTCTTTCTACAATTTGAGTTAGATGTTAGGGAAATGATCGAAAACTGCATCTATGACTTCACTATGGGGTGTTTGGTTCAAAGTGAAGAGGAATTTTGTTTTGGATGTTTGTATGTAAGCTTATGAAGTTTGGTGTATCTATATTTCATTTTATAGAAAATTTCTTTCTTTGGCTTCTGTGATGGCAAAATTTAGCGAGGTTTCAAAATTATTTTGTTTAAAATTTTGTTTTACTAATACTTTTCTTATCTAGTTTATGTAAATAGTTTGTTGGGAACATATAGGGAAGAATGAATATAAAGAGGATGAAAGAATAGATATTAAAGAGCTGGGTGAAGGATTTGAAGGAAAAAAGTACGGAGGGTGAAGAAGAGACTTGAGCGTGTTCAAATTTGCTGGAAACATATCATTGTTGTAACAAGACGTCAATTTCACGATGATTGATACAATATTAAGGAACCTTAAGGAAGTTTATGCATGAAGATTGCATATTTAGTCCTCTCATAGTGGCCAAAGCTTTCCTGAGAGGAGTAGTCAAGGAGGAGTTAGAGGAACTTTATAAGATATAGATGAAGGGTGGAGGATAGTGGGGGCTTTCTCACCCAAGTATGAGAGGTGGGACGCTGGAAAACATGGTTAAGTCAAAGTAATGCCATGCTATGGGGGATGCGTTAAGCTTCATGAATACCTTTGATGTTATGACAAGAAGAGATTTTATCAATATGTTAGATTGCTTGGAGGCTGTTATAAAACTATTGTGGCTTCTCCCCTTTGAAACTGAGATTGTGTATCCTAAAGAAGGAAGCTTTGTCATTCAAATAGTTGTAAATCAATCATCAAGATTGTTAGTTGGTAGAGTGAGGAGTGCCCATGGAGGTTTTTTAACATAAGCAACTACTAATTTCTAGGTGGTTTGTTTGGGTAGAATAACTGGTGTTGAAACTTCAATTGAAGCAGTAGTAGAAGGTTGGCCAAACAAGTTTTTTTCACAATTCATGCTGATAACATGGGGTTTTAAATGAGAGATAATTTTGTTGTTGAAGATTAGTTAAACAAGTTGCTGTTGGAGGAGAAGGTGAAACGTCTCGGTTTTGAAGAAGAAGAGAATGAGTTGTTTAAAAATAAATACTTTGCTAATTTGATTGAAGATGTTGGAAGAGGAAAAGTCATATGTTTATGAGCTTGTATGGAAAATGAAGTTTAAGTGTGTTTCAGGTGGTGGTTTAAAGGGTTCAAGAAAAAAAAAAATTCTAGATTGCTATTGCGTTGGGTTTTCCTTTGTTCTCCTAATGGAATGTTTGGAAGCTCTTGGTTTCATTTTTTTTTTTTATAAATGCTAACTTACCATGATCTATATTATTGACATGACGTTGCATATAATACTGCAAATGTAGAAGTTGAGTATGTCTTTTGATTTTCTTTTTGTTTACAGGCATCTCGCTATCCTTGGATCAGGTGTTGTGCACTTCTACTTCCTTAAAATTTTCAATTTTCAATTCTGTTATTAAAAACAATTAACTTTTCAATTTTCTTTAATCGTCGTCTTTCTGCAGTGGAACGTTCTTCGAAATCACGTAGAAGAAATCGACAAAGCTGTTAATGAAAATTCGTGAGGAAATTAGATCGACATCTTATGTTGATATTAGTAGTAACTGAATCACTCTGTAGGGCTATTCGACTTTATGAGGACGGAAATATGACCTTTTGTACAGCTAATGGGCTTGTTTTTGTGGGCATGAAGACCAAAGAGCAGGTATTAGCATTTATATCTACATTAACTGCATCACTTAGATTGACATTTTGATATTGTAGACCAGAACATGATATTATAATATATTATGCCATAACTGAC

mRNA sequence

AAAGGAGGAAGAGATGTCTGCAAGAGGAAAGCGAAAGGACGATGAAGACCACGCATCCGAAGGAGATGCTCCTCCGAAGAAGACATTTAAGAAAAATTCCGACGAAACCGACGAAATCGTCGTCTGCGAGATTTCGAAGAACCGTAGAGTTATGGTGAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGGAAATGCCTGGAAAAAAAGGCATCTCGCTATCCTTGGATCAGTGGAACGTTCTTCGAAATCACGTAGAAGAAATCGACAAAGCTGTTAATGAAAATTCGTGAGGAAATTAGATCGACATCTTATGTTGATATTAGTAGTAACTGAATCACTCTGTAGGGCTATTCGACTTTATGAGGACGGAAATATGACCTTTTGTACAGCTAATGGGCTTGTTTTTGTGGGCATGAAGACCAAAGAGCAGGTATTAGCATTTATATCTACATTAACTGCATCACTTAGATTGACATTTTGATATTGTAGACCAGAACATGATATTATAATATATTATGCCATAACTGAC

Coding sequence (CDS)

ATGTCTGCAAGAGGAAAGCGAAAGGACGATGAAGACCACGCATCCGAAGGAGATGCTCCTCCGAAGAAGACATTTAAGAAAAATTCCGACGAAACCGACGAAATCGTCGTCTGCGAGATTTCGAAGAACCGTAGAGTTATGGTGAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGGAAATGCCTGGAAAAAAAGGCATCTCGCTATCCTTGGATCAGTGGAACGTTCTTCGAAATCACGTAGAAGAAATCGACAAAGCTGTTAATGAAAATTCGTGA

Protein sequence

MSARGKRKDDEDHASEGDAPPKKTFKKNSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS
Homology
[Close]
BLAST of Carg12700 vs. NCBI nr
Match: XP_023518433.1 (RNA polymerase II transcriptional coactivator KIWI-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.6 bits (514), Expect = 6.3e-49
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MSARGKRKDDEDHASEGDAPPKKTFKKNSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSARGKRKDDEDHASEGDAPPKKTFKK+SDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSARGKRKDDEDHASEGDAPPKKTFKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           EFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS
Sbjct: 61  EFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 101

[Close]
BLAST of Carg12700 vs. NCBI nr
Match: XP_022966500.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita maxima] >XP_022966501.1 RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 199.5 bits (506), Expect = 5.4e-48
Identity = 98/101 (97.03%), Postives = 100/101 (99.01%), Query Frame = 0 

Query: 1   MSARGKRKDDEDHASEGDAPPKKTFKKNSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSARGKRKDDEDHASEGDAPPKKTFKK+S+ETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSARGKRKDDEDHASEGDAPPKKTFKKDSEETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           EFYVKDGKEMPGKKG SLSLDQWNVLRNHVEEIDKAVNENS
Sbjct: 61  EFYVKDGKEMPGKKGFSLSLDQWNVLRNHVEEIDKAVNENS 101

[Close]
BLAST of Carg12700 vs. NCBI nr
Match: XP_022925285.1 (RNA polymerase II transcriptional coactivator KIWI-like [Cucurbita moschata])

HSP 1 Score: 198.7 bits (504), Expect = 9.2e-48
Identity = 98/101 (97.03%), Postives = 100/101 (99.01%), Query Frame = 0 

Query: 1   MSARGKRKDDEDHASEGDAPPKKTFKKNSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSARGKRKDDEDHASEGDAPPKKT KK+S+ETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSARGKRKDDEDHASEGDAPPKKTLKKDSEETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           EFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS
Sbjct: 61  EFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 101

[Close]
BLAST of Carg12700 vs. NCBI nr
Match: XP_023543027.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.1 bits (497), Expect = 5.9e-47
Identity = 95/101 (94.06%), Postives = 100/101 (99.01%), Query Frame = 0 

Query: 1   MSARGKRKDDEDHASEGDAPPKKTFKKNSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSARGKRK+DEDH SEGDAPPKKTF+K+SDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           EFYVKDGK+MPGKKGISLSLDQWNVLRNHV+EIDKAVNENS
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENS 101

[Close]
BLAST of Carg12700 vs. NCBI nr
Match: XP_022932999.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 195.3 bits (495), Expect = 1.0e-46
Identity = 95/101 (94.06%), Postives = 99/101 (98.02%), Query Frame = 0 

Query: 1   MSARGKRKDDEDHASEGDAPPKKTFKKNSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSARGKRKDDEDH  EGDAPPKKTF+K+SDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSARGKRKDDEDHVYEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           EFYVKDGK+MPGKKGISLSLDQWNVLRNHV+EIDKAVNENS
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENS 101

[Close]
BLAST of Carg12700 vs. TAIR10
Match: AT5G09250.1 (ssDNA-binding transcriptional regulator)

HSP 1 Score: 135.2 bits (339), Expect = 2.3e-32
Identity = 70/107 (65.42%), Postives = 85/107 (79.44%), Query Frame = 0 

Query: 1   MSARGKRKDDE----DHASEGDAPPKKTFK--KNSDETDEIVVCEISKNRRVMVRNWQGK 60
           MS+RGKRKD++    D  SE  AP KK  K   +SD++D+IVVC ISKNRRV VRNW GK
Sbjct: 1   MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61  IVVDIREFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           I +DIREFYVKDGK +PGKKGISLS+DQWN LRNH E+I+KA+++ S
Sbjct: 61  IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107

[Close]
BLAST of Carg12700 vs. TAIR10
Match: AT5G09240.2 (ssDNA-binding transcriptional regulator)

HSP 1 Score: 88.2 bits (217), Expect = 3.2e-18
Identity = 59/137 (43.07%), Postives = 76/137 (55.47%), Query Frame = 0 

Query: 1   MSARGKRKDDEDHA------SEGDAPPKKTFKKNSDETDEIVVCEISKNRRVMVRNWQGK 60
           MS  GKRKD++  A      SE  APPKK   K +DE ++I +C + KNRRV VRN  G+
Sbjct: 1   MSENGKRKDEDVRASDDRDESETHAPPKKV-AKPADEIEDIFICNLDKNRRVFVRNCNGR 60

Query: 61  IVVDIREFYVKDGKEMP--GKKGISLSLD----------------------------QWN 102
           I + IR+F+VKDG  +P   K+GISLSL+                            QWN
Sbjct: 61  IWIAIRQFFVKDGITLPCNSKQGISLSLEQVFTSLFHCLCLPHVHMSCLLHETFFLMQWN 120

[Close]
BLAST of Carg12700 vs. TAIR10
Match: AT4G10920.1 (transcriptional coactivator p15 (PC4) family protein (KELP))

HSP 1 Score: 71.2 bits (173), Expect = 4.0e-13
Identity = 37/92 (40.22%), Postives = 60/92 (65.22%), Query Frame = 0 

Query: 8   KDDEDHASEGDAPPKKTFKKNSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDG 67
           K++ED    GD    K  K+  D+ D +++C +S  RRV ++ ++GK +V IRE+Y KDG
Sbjct: 74  KEEED----GDKDCGKGNKEFDDDGD-LIICRLSDKRRVTIQEFKGKSLVSIREYYKKDG 133

Query: 68  KEMPGKKGISLSLDQWNVLRNHVEEIDKAVNE 100
           KE+P  KGISL+ +QW+  + ++  I+ AV +
Sbjct: 134 KELPTSKGISLTDEQWSTFKKNMPAIENAVKK 160

[Close]
BLAST of Carg12700 vs. Swiss-Prot
Match: sp|O65154|KIWI_ARATH (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=3702 GN=KIWI PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.1e-31
Identity = 70/107 (65.42%), Postives = 85/107 (79.44%), Query Frame = 0 

Query: 1   MSARGKRKDDE----DHASEGDAPPKKTFK--KNSDETDEIVVCEISKNRRVMVRNWQGK 60
           MS+RGKRKD++    D  SE  AP KK  K   +SD++D+IVVC ISKNRRV VRNW GK
Sbjct: 1   MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61  IVVDIREFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           I +DIREFYVKDGK +PGKKGISLS+DQWN LRNH E+I+KA+++ S
Sbjct: 61  IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107

[Close]
BLAST of Carg12700 vs. Swiss-Prot
Match: sp|O65155|KELP_ARATH (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=3702 GN=KELP PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.2e-12
Identity = 37/92 (40.22%), Postives = 60/92 (65.22%), Query Frame = 0 

Query: 8   KDDEDHASEGDAPPKKTFKKNSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDG 67
           K++ED    GD    K  K+  D+ D +++C +S  RRV ++ ++GK +V IRE+Y KDG
Sbjct: 74  KEEED----GDKDCGKGNKEFDDDGD-LIICRLSDKRRVTIQEFKGKSLVSIREYYKKDG 133

Query: 68  KEMPGKKGISLSLDQWNVLRNHVEEIDKAVNE 100
           KE+P  KGISL+ +QW+  + ++  I+ AV +
Sbjct: 134 KELPTSKGISLTDEQWSTFKKNMPAIENAVKK 160

[Close]
BLAST of Carg12700 vs. Swiss-Prot
Match: sp|P11031|TCP4_MOUSE (Activated RNA polymerase II transcriptional coactivator p15 OS=Mus musculus OX=10090 GN=Sub1 PE=1 SV=3)

HSP 1 Score: 64.7 bits (156), Expect = 6.8e-10
Identity = 30/74 (40.54%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 27  KNSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-KDGKEMPGKKGISLSLDQWNV 86
           K S  + +  + +I K R V VR+++GKI++DIRE+++  +G+  PG+KGISL+++QW+ 
Sbjct: 53  KQSSSSRDDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQ 112

Query: 87  LRNHVEEIDKAVNE 100
           L+  + +ID AV +
Sbjct: 113 LKEQISDIDDAVRK 126

[Close]
BLAST of Carg12700 vs. Swiss-Prot
Match: sp|Q5ZK63|TCP4_CHICK (Activated RNA polymerase II transcriptional coactivator p15 OS=Gallus gallus OX=9031 GN=SUB1 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.8e-10
Identity = 28/62 (45.16%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 39  EISKNRRVMVRNWQGKIVVDIREFYV-KDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAV 98
           +I K R V VR+++GK+++DIRE+++ ++G+  PG+KGISL+ +QWN L+  + +ID AV
Sbjct: 64  QIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMKPGRKGISLNPEQWNQLKEQISDIDDAV 123

Query: 99  NE 100
            +
Sbjct: 124 RK 125

[Close]
BLAST of Carg12700 vs. Swiss-Prot
Match: sp|Q63396|TCP4_RAT (Activated RNA polymerase II transcriptional coactivator p15 OS=Rattus norvegicus OX=10116 GN=Sub1 PE=1 SV=3)

HSP 1 Score: 64.3 bits (155), Expect = 8.8e-10
Identity = 28/62 (45.16%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 39  EISKNRRVMVRNWQGKIVVDIREFYV-KDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAV 98
           +I K R V VR+++GKI++DIRE+++  +G+  PG+KGISL+++QW+ L+  + +ID AV
Sbjct: 65  QIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDDAV 124

Query: 99  NE 100
            +
Sbjct: 125 RK 126

[Close]
BLAST of Carg12700 vs. TrEMBL
Match: tr|A0A0A0L2F1|A0A0A0L2F1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G496770 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 9.1e-44
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 0 

Query: 1   MSARGKRKDDEDHASEGDAPPKKTFKKNSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSA GKRK DED  SEGDAPP KTFKK+SD+TDEIVVCE+SKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSASGKRKGDEDDVSEGDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           EFYVKDGK+MPGKKGISLSLDQWNVL NHVEEIDKAVNENS
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENS 101

[Close]
BLAST of Carg12700 vs. TrEMBL
Match: tr|A0A1S3B4K6|A0A1S3B4K6_CUCME (RNA polymerase II transcriptional coactivator KIWI isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486087 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.7e-42
Identity = 88/101 (87.13%), Postives = 93/101 (92.08%), Query Frame = 0 

Query: 1   MSARGKRKDDEDHASEGDAPPKKTFKKNSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSA GKRKDDED  SEGDAPP KTF+K+ D+ DEIVVCE+SKNRRVMVR WQGKIVVDIR
Sbjct: 1   MSASGKRKDDEDRVSEGDAPPSKTFRKDPDDADEIVVCELSKNRRVMVRKWQGKIVVDIR 60

Query: 61  EFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           EFYVKDGK+MPGKKGISLSLDQWNVL NHVEEIDKAVNENS
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENS 101

[Close]
BLAST of Carg12700 vs. TrEMBL
Match: tr|A0A1J7H3U3|A0A1J7H3U3_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_03582 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.3e-36
Identity = 80/104 (76.92%), Postives = 92/104 (88.46%), Query Frame = 0 

Query: 1   MSARGKRKDDEDHA---SEGDAPPKKTFKKNSDETDEIVVCEISKNRRVMVRNWQGKIVV 60
           MS +GKRK++ DHA   SEG APP KT KK+SD+ D IVVCEISKNRRV VRNWQGKIVV
Sbjct: 1   MSGKGKRKEN-DHASDDSEGHAPPNKTAKKDSDDPDSIVVCEISKNRRVSVRNWQGKIVV 60

Query: 61  DIREFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           DIREFY KDGK++PGKKGISL++DQWNVLR+H+EEID+AVNENS
Sbjct: 61  DIREFYQKDGKQLPGKKGISLTMDQWNVLRDHIEEIDEAVNENS 103

[Close]
BLAST of Carg12700 vs. TrEMBL
Match: tr|M5WID1|M5WID1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G275800 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.2e-35
Identity = 81/107 (75.70%), Postives = 91/107 (85.05%), Query Frame = 0 

Query: 1   MSARGKRKDDEDHASEGD----APPKKTFKKNS--DETDEIVVCEISKNRRVMVRNWQGK 60
           MS RGKRKD+EDHAS+GD    APPKKT K++S  D +DEI+ CEISKNRRV VRNW GK
Sbjct: 1   MSWRGKRKDEEDHASDGDSEGHAPPKKTCKRDSADDNSDEIIACEISKNRRVTVRNWNGK 60

Query: 61  IVVDIREFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 102
           I+VDIREFYVKDGK+MPGKKGISL+ DQW+VL NHVEEIDKAVN  S
Sbjct: 61  IMVDIREFYVKDGKQMPGKKGISLTKDQWDVLHNHVEEIDKAVNGTS 107

[Close]
BLAST of Carg12700 vs. TrEMBL
Match: tr|I3SIW1|I3SIW1_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.4e-35
Identity = 79/105 (75.24%), Postives = 91/105 (86.67%), Query Frame = 0 

Query: 1   MSARGKRKDDEDHASEGD----APPKKTFKKNSDE-TDEIVVCEISKNRRVMVRNWQGKI 60
           MS +GK++DD D AS+ D    APPKK+ KK+SDE  D IVVCEISKNRRV VRNWQG+I
Sbjct: 1   MSGKGKKRDDLDRASDADSDSHAPPKKSLKKDSDEDPDSIVVCEISKNRRVSVRNWQGRI 60

Query: 61  VVDIREFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNEN 101
           VVDI EFYVKDGK+MPGKKGISL++DQWNVLRNH+EEIDKAVNE+
Sbjct: 61  VVDILEFYVKDGKQMPGKKGISLTMDQWNVLRNHIEEIDKAVNES 105

The following BLAST results are available for this feature:
BLAST of Carg12700 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023518433.16.3e-4999.01RNA polymerase II transcriptional coactivator KIWI-like [Cucurbita pepo subsp. p... [more]
XP_022966500.15.4e-4897.03RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita ma... [more]
XP_022925285.19.2e-4897.03RNA polymerase II transcriptional coactivator KIWI-like [Cucurbita moschata][more]
XP_023543027.15.9e-4794.06RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Cucurbita pe... [more]
XP_022932999.11.0e-4694.06RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita mo... [more]
BLAST of Carg12700 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G09250.12.3e-3265.42ssDNA-binding transcriptional regulator[more]
AT5G09240.23.2e-1843.07ssDNA-binding transcriptional regulator[more]
AT4G10920.14.0e-1340.22transcriptional coactivator p15 (PC4) family protein (KELP)[more]
BLAST of Carg12700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O65154|KIWI_ARATH4.1e-3165.42RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=37... [more]
sp|O65155|KELP_ARATH7.2e-1240.22RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=37... [more]
sp|P11031|TCP4_MOUSE6.8e-1040.54Activated RNA polymerase II transcriptional coactivator p15 OS=Mus musculus OX=1... [more]
sp|Q5ZK63|TCP4_CHICK8.8e-1045.16Activated RNA polymerase II transcriptional coactivator p15 OS=Gallus gallus OX=... [more]
sp|Q63396|TCP4_RAT8.8e-1045.16Activated RNA polymerase II transcriptional coactivator p15 OS=Rattus norvegicus... [more]
BLAST of Carg12700 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L2F1|A0A0A0L2F1_CUCSA9.1e-4490.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G496770 PE=4 SV=1[more]
tr|A0A1S3B4K6|A0A1S3B4K6_CUCME1.7e-4287.13RNA polymerase II transcriptional coactivator KIWI isoform X1 OS=Cucumis melo OX... [more]
tr|A0A1J7H3U3|A0A1J7H3U3_LUPAN5.3e-3676.92Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_03582 PE=4 S... [more]
tr|M5WID1|M5WID1_PRUPE1.2e-3575.70Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G275800 PE=4 SV=1[more]
tr|I3SIW1|I3SIW1_LOTJA3.4e-3575.24Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR009044ssDNA-bd_transcriptional_reg
IPR003173PC4
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12700-RACarg12700-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003173Transcriptional coactivator p15 (PC4)PFAMPF02229PC4coord: 38..88
e-value: 4.7E-25
score: 86.9
IPR009044ssDNA-binding transcriptional regulatorGENE3DG3DSA:2.30.31.10coord: 26..101
e-value: 3.8E-27
score: 95.5
IPR009044ssDNA-binding transcriptional regulatorSUPERFAMILYSSF54447ssDNA-binding transcriptional regulator domaincoord: 37..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availablePANTHERPTHR13215RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATORcoord: 12..99

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12700Cla011659Watermelon (97103) v1carwmB0275
Carg12700Csa4G496770Cucumber (Chinese Long) v2carcuB0311
Carg12700MELO3C008937Melon (DHL92) v3.5.1carmeB0284
Carg12700ClCG04G001940Watermelon (Charleston Gray)carwcgB0275
Carg12700CSPI04G20010Wild cucumber (PI 183967)carcpiB0316
Carg12700Cucsa.353820Cucumber (Gy14) v1carcgyB0335
Carg12700CmaCh07G012750Cucurbita maxima (Rimu)carcmaB0398
Carg12700CmoCh07G013130Cucurbita moschata (Rifu)carcmoB0395
Carg12700Lsi01G019930Bottle gourd (USVL1VR-Ls)carlsiB257
Carg12700Cp4.1LG19g00990Cucurbita pepo (Zucchini)carcpeB0400
Carg12700CsGy4G019070Cucumber (Gy14) v2carcgybB0300
Carg12700MELO3C008937.2Melon (DHL92) v3.6.1carmedB0296
Carg12700CsaV3_4G030720Cucumber (Chinese Long) v3carcucB0314
Carg12700Cla97C04G069680Watermelon (97103) v2carwmbB0291
Carg12700Bhi03G002290Wax gourdcarwgoB0369
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg12700Cucurbita maxima (Rimu)carcmaB0397
Carg12700Cucurbita moschata (Rifu)carcmoB0394
Carg12700Wild cucumber (PI 183967)carcpiB0315
Carg12700Cucumber (Chinese Long) v2carcuB0309
Carg12700Bottle gourd (USVL1VR-Ls)carlsiB259
Carg12700Bottle gourd (USVL1VR-Ls)carlsiB260
Carg12700Melon (DHL92) v3.5.1carmeB0286
Carg12700Melon (DHL92) v3.5.1carmeB0287
Carg12700Melon (DHL92) v3.6.1carmedB0298
Carg12700Watermelon (Charleston Gray)carwcgB0276
Carg12700Watermelon (97103) v1carwmB0277
Carg12700Watermelon (97103) v1carwmB0278
Carg12700Watermelon (97103) v2carwmbB0292
Carg12700Wax gourdcarwgoB0373
Carg12700Cucumber (Gy14) v2carcgybB0297
Carg12700Cucumber (Gy14) v1carcgyB0336