Csa4G442590 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCAAACCAGTCTCCCGGTAAGGCCGTATTCTTTGAGTTATCTTCTCTTATGTGTAGCTTCTTATTTCGTTTTCATCAATCCTAAGTTTCTTTATCCATTGTCCATGAAGGTCGGATGTGAAATCTAAAGCTGAACGCAAATTTGAGAAGAAGGTCCAGTTTTATGAGAGTGAGTTCGGATTTCTGACATTAACTTGATGGTGTTTGTTCCATAAGTTGCTTCACTGTCCTTGTTTCAAAAAACTATTCATCTATTGATTCTATCTGATTTGAAATAACTGGAGCTTCTCTTTTAAAGAAATATTATTTGAATACAGAAATATAGATTAACAAATGACAAAACATATTTGATTGCATACTGCTAATGTGATGCAAATTGCAAAAAATGCAGACCTAAATTGGCCACCTAGTGCAGGTTATCAAAAGAATACAGGCCTAATTTTACTTCAGTTGTCAGTTTTCATTCTAAAACTTGTTCTAGTACTTTTTCAAAGCAAATACCAATGTGTTTCAGTTGATTTTTTGATTTCCGAATAAATGAAAGGTCACCTTTCAGAATTGCCAATCAAGTTATATTTCAATACCATTTTGTTGTTTAGTATCTTCAATTTAACTCTAGGGATGTTTATTTTCATTTTTGAGCGTTGTTTCTGGTATCATAAACAATTACATGTTAAATCTGGCCACATGCAGGAGTTGGAGAAACTATTACTACCTTGAATGCTCAAAAGAGTATTACTAAGGTAAAATTAGATATTCATTCTATTACTTTGCGGCTCTATATTTCCTCACTAATTATGGCCATTCAGTTTTCTTATTATTCCTTTTCATTTTTGTCATTGATGGCTTTTAATACTCTTCCTTTTTTATTATGTGAATAGTTCTCGAACAATCTTTTGTTTCTCCTTTTTATCTTTTAAACTAACTGTAGCTATAATCTTGTACGACATAAGCACAATCAACCTCATGTATCCATTATAGTTAGTGCCATCTAATAATAGTTTGTGTCAAAGTTAAGCCAAGCTTTTTTTTAATATGACCAAACGTTAGAAGGTTATACATTAATCATGGAACCACATAAACACCTATATGAGCTCTGTCAACTTTATGCTCTGTACATAATATATAGATAAAACCAATATAATACTAATAATTGCATGAGTCCTAGGTTTAGATCTCATGCATTTATTTTTAATTTTTCCTTCATTGATATAAATCCTCCTGCCAATAAAATTTATTTATCCGTCACTACACATAAACATAGTTACAAGGGTTTATTGGTATACCCTGAAAATTTCATCCTCTACTATGATGAATTTGACGTGGAGTGCTTCAATCTTTCTACTTTACTTTTAAATTTTAACATTTGAAAATAGTCATTTTAGTTACTAGCATAATTGCTGGTTCAATAATATGAAGTGATTGTCAATAACGAGGAACTTAGGAATTGGCTATAGTTAGAATAGGAGCATTTTGATTGGTTCAGTGTTCTAATTCCTTGTACAAAGTATCCCCCCTCCCCCTCAAACCCCCCCCCAAAAAAAAAAAAAAGAAAAAGGAGAGAGAATAATTGATGCATTTTTTGTCACCATGCTTTCATTTTGCTCTTTTAGTAATATTCTAAAGTTGAATATATGTAACAGAAGAAAAACCATCGAAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACACTTTCAGAGTTTCTTCCTGGATTGGAGGCGACAAAACAAAAACCTTCTGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAATTCATGTAGGTTGCTTGTTACTTGTTAGCAATTATTTGACATGTTTTACAATTTATCCTTATTTTATGCATTATTGTAATGATGGTTCATTTTATCAGATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTGTTTCAGGCAGACCCATTGAGAGCTGTTCAGCTACATTTAGAGGGCACACAACCAATTGAGGAACCGAAGAAAAAGAAAATGAATAAAAATGGGAGCAAAAAAAGGAAAGAGAAGAAGTCAAAAGCCTCGGCAAAACCTTCATCTATGGAGATGTGACTAATCTTCTTTTGCCATGTAAGCCTCTTTGGTAAATACTTACATGCTCATTTTGATCCGTGAGATTAACTTGTTTGTTATCATTAACAAGTTGATCTCGCTTGAGCTTTGAATTTTCTCCTGGAATCAGATTCCGGTAGGCAATTCTTGTTTTTGAATGCATAGGCAACCCACCTTCATTTTGTTTGTTTATAGATAGGAGCAGCTCCCCTGCAAACATTGTCATGATATTTTAAATATTATCTTTGACTGAAATAATGGTCTATTTCTTCTTCTATAAAAGTACAAAAAAAAGAATAA ATGGGCAAACCAGTCTCCCGGTCGGATGTGAAATCTAAAGCTGAACGCAAATTTGAGAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTACTACCTTGAATGCTCAAAAGAGTATTACTAAGAAGAAAAACCATCGAAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACACTTTCAGAGTTTCTTCCTGGATTGGAGGCGACAAAACAAAAACCTTCTGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAATTCATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTGTTTCAGGCAGACCCATTGAGAGCTGTTCAGCTACATTTAGAGGGCACACAACCAATTGAGGAACCGAAGAAAAAGAAAATGAATAAAAATGGGAGCAAAAAAAGGAAAGAGAAGAAGTCAAAAGCCTCGGCAAAACCTTCATCTATGGAGATGTGA ATGGGCAAACCAGTCTCCCGGTCGGATGTGAAATCTAAAGCTGAACGCAAATTTGAGAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTACTACCTTGAATGCTCAAAAGAGTATTACTAAGAAGAAAAACCATCGAAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACACTTTCAGAGTTTCTTCCTGGATTGGAGGCGACAAAACAAAAACCTTCTGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAATTCATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTGTTTCAGGCAGACCCATTGAGAGCTGTTCAGCTACATTTAGAGGGCACACAACCAATTGAGGAACCGAAGAAAAAGAAAATGAATAAAAATGGGAGCAAAAAAAGGAAAGAGAAGAAGTCAAAAGCCTCGGCAAAACCTTCATCTATGGAGATGTGA MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM*
BLAST of Csa4G442590 vs. TrEMBL
Match: A0A0A0L113_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G442590 PE=4 SV=1) HSP 1 Score: 310.8 bits (795), Expect = 9.3e-82 Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1
BLAST of Csa4G442590 vs. TrEMBL
Match: A0A067LQC7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22136 PE=4 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 1.0e-43 Identity = 96/158 (60.76%), Postives = 118/158 (74.68%), Query Frame = 1
BLAST of Csa4G442590 vs. TrEMBL
Match: B9T778_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0357370 PE=4 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 1.7e-43 Identity = 97/158 (61.39%), Postives = 121/158 (76.58%), Query Frame = 1
BLAST of Csa4G442590 vs. TrEMBL
Match: B9HS49_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s09990g PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.1e-42 Identity = 97/158 (61.39%), Postives = 114/158 (72.15%), Query Frame = 1
BLAST of Csa4G442590 vs. TrEMBL
Match: M5XTD5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012713mg PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.1e-42 Identity = 95/159 (59.75%), Postives = 121/159 (76.10%), Query Frame = 1
BLAST of Csa4G442590 vs. TAIR10
Match: AT2G01640.1 (AT2G01640.1 unknown protein) HSP 1 Score: 152.1 bits (383), Expect = 2.8e-37 Identity = 79/153 (51.63%), Postives = 104/153 (67.97%), Query Frame = 1
BLAST of Csa4G442590 vs. NCBI nr
Match: gi|449453199|ref|XP_004144346.1| (PREDICTED: putative ribosome biogenesis protein slx9-like [Cucumis sativus]) HSP 1 Score: 310.8 bits (795), Expect = 1.3e-81 Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1
BLAST of Csa4G442590 vs. NCBI nr
Match: gi|659118037|ref|XP_008458918.1| (PREDICTED: uncharacterized protein LOC103498180 [Cucumis melo]) HSP 1 Score: 204.5 bits (519), Expect = 1.4e-49 Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 1
BLAST of Csa4G442590 vs. NCBI nr
Match: gi|743794759|ref|XP_011001069.1| (PREDICTED: putative ribosome biogenesis protein slx9-like isoform X2 [Populus euphratica]) HSP 1 Score: 186.0 bits (471), Expect = 5.0e-44 Identity = 100/158 (63.29%), Postives = 116/158 (73.42%), Query Frame = 1
BLAST of Csa4G442590 vs. NCBI nr
Match: gi|658008313|ref|XP_008339347.1| (PREDICTED: uncharacterized protein LOC103402381 isoform X1 [Malus domestica]) HSP 1 Score: 184.9 bits (468), Expect = 1.1e-43 Identity = 92/159 (57.86%), Postives = 126/159 (79.25%), Query Frame = 1
BLAST of Csa4G442590 vs. NCBI nr
Match: gi|802536321|ref|XP_012067169.1| (PREDICTED: ribosome biogenesis protein slx9 [Jatropha curcas]) HSP 1 Score: 184.5 bits (467), Expect = 1.4e-43 Identity = 96/158 (60.76%), Postives = 118/158 (74.68%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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