CsGy4G018440 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G018440
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	putative ribosome biogenesis protein slx9-like
Location	Chr4 : 24021626 .. 24027623 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTAATTTTCGATTTCACGCTTAAGAGTTTTAATTTCACGCCGCCTCAATCATCTCTCTCTAACTCACCTTCTCGTTTCGGGCTCTCATCTCACGCCGTCGCCGGCGTTCAATCTCTCTCCTTCTCAGTCTTCGGTCGTCTCTCCTTCTCAGAAGTCTCTCAATCTCCCATCTTTCAATCTCCGATCGTCGCTCGCGCTCGGCTCTCTCTCACCATGGCGTTGCAGGACTAACCAATCGGATTATTTTTCTCAAGGTAAATAACTTTTTGCTCCAGTTGGAACTTTTGGATGACATTTATGACCATATTTGAACAAGATCTATTCTATTGATTGTAGACATTTTGCCTTTGCTTTGGTAGTTTTATCATTTATTATCTATTGGGTTTCATTCCACTTTGTTTGAGAGGGGAGATTGGGAAAAACATTAAGTCAAATTGTCTTCGAAACTTACACTCTTATTTTCACTTAAAATAATGCAACCCGATGACCCAACCCAAGAAATAATGTTTGAGGCAGGATCACTATATTTTGAAAGATTGTATTTAGTAAGTATTTAGGAAGCATCTTAAGAGTTTGATAGAAACAATCATAATTTTTAAGTTGTTTTCATGGTCAAAGTGTCACACATAGAGTTGTAATTTGTAGTTGGTTATGAGTTTAAAAGTCACATTTAAGATACTTTTTAGGTTGGTTCGAGAGTAAAATGTATCACTTACACATTTTAAAGTTATGTTGAGATTTGATTCACAGTTTTACGTTGGTTGATTTTTGAAGGCATACTTAAGTATTTTAAAATTGTTTTGAGAGTTAAGTGTCACTTATACACTTTTAACCTTTTTGGCTTCAGCTATCACATTGACTTTGTTCGGAAAAGTATTTCTTTTCCACTCGGTCACAACTTGGAGTTTTTGAATTAAAGTTTAAGGTTATTTTGGTCGAGAACATTCCCTCTGAACCTTTTTGGTTTCAGCTGAGGTTTTCAACGAAATTATAATATTAAAATCTCGTTCTTATTGTTTTAGGGACATATCCAATAGTTTAGTAGCTGTTTAGGACGTCTAGTAAGTAGAATTCTACTTGCCGAAATTTTTTGTTGTGTCTTAGCATACTTCATGTTTTACTTATTTCATTAGAGTATATGCTTTATGATGATTTTTGAGCTGAATGTGTGATAGATACCTACATTTAGATAGGGCTAAGGGTAGTTAGTTATATAAGGCAGTTAGATGGTTATAAATAGGGAGGTGGGGAGGGAAGAAGGGCATGAAGAATTTGGTGAAGTTAATGGGCTGCAACACTCCTTGAAAGAAAGGAAGGGCAGAGGGTTAGGGTTTTTTTACTTGTTTGTTCTTTAATATTGTAATTTTCTGTTTGAGATATCAATAAAAGAGAAACACTATATCAGTGTTCTATCAATGTGTTGCTGTGATTTTGGATGTTAAAGCATGATGAGTTGTTAAGTAGAATTCTACTTGCCGAATTTTTTTGTTGCGTCTTAGCATACTTCATTAGAGTATGCTTCATATGCTTTATGATGATTTTCGAGCTGAATGTGTTGCTGTGATTTTGGATGTTAAAGCATGATGAGTTGTTAAGTTACAAGAGTATTGTGGTGATGAACATACTTATATGTTGACTTTTTTGGGAAAAGTATAACTTCTTTTAAGTTGTCACTGAGTGTGTGTTTAAATGTGATAATAAAGTATAGTCTAAGTCTAGAAGGCATGTTTAGGTTATGCAGGGCAGCCTATTTAGTGTTAGTTTGGGGTATGGGTATTTGTTAAGCCCCCAATCATCCACACGTACCAGAGAAAGGGAAAACGAGGAAAAATGGGGAGTATTGGTACGGAAGTGAATGTTGGCACAAAAATAAATGGTTACTCGAGCGGGGGCCATCTTTGAGGGGTTTATGAGTGGTTTTGGAAATTATTTTGAGGTTTGATCATTTTGGAAGCTCTTGAGACTTTTGGAGAGGGACGCAGCTCTTGAATTCTGCCCTATCTTCTCTTTATGTTTTTCTTCCTTCTTGTTCTTAGTCTTGTGCTGTGTTCTTGCTTTATATGAGTATTTGAGATTACCTTGTAGTTGTTGGACATTTTTCATTGAATATCATCTTCTGAAGTGATTGTTACTGTTTAGAGTTCTTGTTGGGTATTTTTCTGAGTGCAGGGAAGTCAATACTTAACAGTATTTTGATTGTGTTTGTAAATTGTAATGGTTGCTTTGCTATATATCCCACACCTTGTCCTCAAGGTGTGTTTGAAGGGCGATATAATGTGAGGTTTGATCATTTTGGAAGCTCTTGAGACTTTTGGAGAGGGACGCAGCTCTTGAATTCTGCCCTATCTTCTCTTTATGTTTTTCTTCCTTCTTGTTCTTAGTCTTGTGCTGTGTTCTTGCTTTATATGAGTATTTGAGATTACCTTGTAGTTGTTAGACATTTTTCATTGAATATCATCTTCTGAAGTGATTGTTACTGTTTAGAGTTCTTGTTGGGTATTTTTCTGAGTGCAGGGAAGTCAATACTTAACAGTATTTTGATTGTGTTTGTAAATTGTAATGGTTGCTTTGCTATATATCCCACACCTTGTCCTCAAGGTGTGTTTGAAGGGCGATATAATGTGAGGGTACTAATATGCTAAGCTTCAACACAACCTGCAAAACTAATAAAACCAGAACACATAACAACCAGAATTCTGGGAGGAAGCTATTGTATTGAATTCTTTCAACACCACAAAATAGTTCTTCAAATGATACCAGCCAAATAAGAGGGCTGTCCTCTCCCTAATGAACAGAGTTCATTCAAAATACATAACAAAGATGATAACCAACCCTAGTACAAAACACCCACATATATATTCCCTCCCCTTTTCTGCCACATTGTTCTAGGATCACTGACCTCTCTAACTAGTAACTACCATGTTGTCTATGTGGAATTTCCCTTTTTACACTTCTTCTTATACACTTGAGTAACGGGTGACCTAGCATAATAGTGGTACTTTTGGAACAGTAGTAGAGTAAGGGTGTAATGGTAATTAGATAGAGGTAGTTTCGTTATAAATAGGAGTTAGGTTTTGTAGGAAGGGAGGTCATATTTTGGTAGGTTAGTCCATGGCGGGTTGATCGTGGGAGAAAGACAACCCTCTCGAAAGGCTATTAACATACATTATTATTTTTTCATTGATGCTGCAATGCTATCTTTTGTGTTTTTCATATATTTTTCTGTGTTGGATACCCAACACTTTAGTTTATACTTTGAGATCCTAATATGATCCTACTTTGTGATCTAAGCGCAGAAGTTTTTGATTTGAGGAAATTCCATCTTTTGATTCAAGTAATCAGAAAACTCACAAGTTGTTATTATGGGCAAACCAGTCTCCCGGTAAGGCCGTATTCTTTGAGTTATCTTCTCTTATGTGTAGCTTCTTATTTCGTTTTCATCAATCCTAAGTTTCTTTATCCATTGTCCATGAAGGTCGGATGTGAAATCTAAAGCTGAACGCAAATTTGAGAAGAAGGTCCAGTTTTATGAGAGTGAGTTCGGATTTCTGACATTAACTTGATGGTGTTTGTTCCATAAGTTGCTTCACTGTCCTTGTTTCAAAAAACTATTCATCTATTGATTCTATCTGATTTGAAATAACTGGAGCTTCTCTTTTAAAGAAATATTATTTGAATACAGAAATATAGATTAACAAATGACAAAACATATTTGATTGCATACTGCTAATGTGATGCAAATTGCAAAAAATGCAGACCTAAATTGGCCACCTAGTGCAGGTTATCAAAAGAATACAGGCCTAATTTTACTTCAGTTGTCAGTTTTCATTCTAAAACTTGTTCTAGTACTTTTTCAAAGCAAATACCAATGTGTTTCAGTTGATTTTTTGATTTCCGAATAAATGAAAGGTCACCTTTCAGAATTGCCAATCAAGTTATATTTCAATACCATTTTGTTGTTTAGTATCTTCAATTTAACTCTAGGGATGTTTATTTTCATTTTTGAGCGTTGTTTCTGGTATCATAAACAATTACATGTTAAATCTGGCCACATGCAGGAGTTGGAGAAACTATTACTACCTTGAATGCTCAAAAGAGTATTACTAAGGTAAAATTAGATATTCATTCTATTACTTTGCGGCTCTATATTTCCTCACTAATTATGGCCATTCAGTTTTCTTATTATTCCTTTTCATTTTTGTCATTGATGGCTTTTAATACTCTTCCTTTTTTATTATGTGAATAGTTCTCGAACAATCTTTTGTTTCTCCTTTTTATCTTTTAAACTAACTGTAGCTATAATCTTGTACGACATAAGCACAATCAACCTCATGTATCCATTATAGTTAGTGCCATCTAATAATAGTTTGTGTCAAAGTTAAGCCAAGCTTTTTTTTAATATGACCAAACGTTAGAAGGTTATACATTAATCATGGAACCACATAAACACCTATATGAGCTCTGTCAACTTTATGCTCTGTACATAATATATAGATAAAACCAATATAATACTAATAATTGCATGAGTCCTAGGTTTAGATCTCATGCATTTATTTTTAATTTTTCCTTCATTGATATAAATCCTCCTGCCAATAAAATTTATTTATCCGTCACTACACATAAACATAGTTACAAGGGTTTATTGGTATACCCTGAAAATTTCATCCTCTACTATGATGAATTTGACGTGGAGTGCTTCAATCTTTCTACTTTACTTTTAAATTTTAACATTTGAAAATAGTCATTTTAGTTACTAGCATAATTGCTGGTTCAATAATATGAAGTGATTGTCAATAACGAGGAACTTAGGAATTGGCTATAGTTAGAATAGGAGCATTTTGATTGGTTCAGTGTTCTAATTCCTTGTACAAAGTATCCCCCTCCCCTCAAACCCCCCCCAAAAAAAAAAAAAAGAAAAAGGAGAGAGAATAATTGATGCATTTTTTGTCACCATGCTTTCATTTTGCTCTTTTAGTAATATTCTAAAGTTGAATATATGTAACAGAAGAAAAACCATCGAAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACACTTTCAGAGTTTCTTCCTGGATTGGAGGCGACAAAACAAAAACCTTCTGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAATTCATGTAGGTTGCTTGTTACTTGTTAGCAATTATTTGACATGTTTTACAATTTATCCTTATTTTATGCATTATTGTAATGATGGTTCATTTTATCAGATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTGTTTCAGGCAGACCCATTGAGAGCTGTTCAGCTACATTTAGAGGGCACACAACCAATTGAGGAACCGAAGAAAAAGAAAATGAATAAAAATGGGAGCAAAAAAAGGAAAGAGAAGAAGTCAAAAGCCTCGGCAAAACCTTCATCTATGGAGATGTGACTAATCTTCTTTTGCCATGTAAGCCTCTTTGGTAAATACTTACATGCTCATTTTGATCCGTGAGATTAACTTGTTTGTTATCATTAACAAGTTGATCTCGCTTGAGCTTTGAATTTTCTCCTGGAATCAGATTCCGGTAGGCAATTCTTGTTTTTGAATGCATAGGCAACCCACCTTCATTTTGTTTGTTTATAGATAGGAGCAGCTCCCCTGCAAACATTGTCATGATATTTTAAATATTATCTTTGACTGAAATAATGGTCTATTTCTTCTTCTATAAAAGTACAAAAAAAAGAATAAAAAATCAAAAGGTCTAATGTACAAATAATTCTTCACCCTCTCTATCAAACTAGAAAGAAAAGAAGAATTGGGTGGTATAAGGTTTGTAAGTTGGTATTCTCCTCATTTCCTTCAATAATTATGTTTACATAGCTAATTATCACCCAATTCCAATAGTAAGTAATGGGTATGAGTTTTTAATATTTTCTTTTTTAGGCGTGTTTAGGGAAATGTCTGATATAATATGGAGGGTTAGAGTTATGATAAACTTA

mRNA sequence

CGTAATTTTCGATTTCACGCTTAAGAGTTTTAATTTCACGCCGCCTCAATCATCTCTCTCTAACTCACCTTCTCGTTTCGGGCTCTCATCTCACGCCGTCGCCGGCGTTCAATCTCTCTCCTTCTCAGTCTTCGGTCGTCTCTCCTTCTCAGAAGTCTCTCAATCTCCCATCTTTCAATCTCCGATCGTCGCTCGCGCTCGGCTCTCTCTCACCATGGCGTTGCAGGACTAACCAATCGGATTATTTTTCTCAAGAAGTTTTTGATTTGAGGAAATTCCATCTTTTGATTCAAGTAATCAGAAAACTCACAAGTTGTTATTATGGGCAAACCAGTCTCCCGGTCGGATGTGAAATCTAAAGCTGAACGCAAATTTGAGAAGAAGGTCCAGTTTTATGAGAACCTAAATTGGCCACCTAGTGCAGGAGTTGGAGAAACTATTACTACCTTGAATGCTCAAAAGAGTATTACTAAGAAGAAAAACCATCGAAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACACTTTCAGAGTTTCTTCCTGGATTGGAGGCGACAAAACAAAAACCTTCTGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAATTCATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTGTTTCAGGCAGACCCATTGAGAGCTGTTCAGCTACATTTAGAGGGCACACAACCAATTGAGGAACCGAAGAAAAAGAAAATGAATAAAAATGGGAGCAAAAAAAGGAAAGAGAAGAAGTCAAAAGCCTCGGCAAAACCTTCATCTATGGAGATGTGACTAATCTTCTTTTGCCATGTAAGCCTCTTTGGTAAATACTTACATGCTCATTTTGATCCGTGAGATTAACTTGTTTGTTATCATTAACAAGTTGATCTCGCTTGAGCTTTGAATTTTCTCCTGGAATCAGATTCCGGTAGGCAATTCTTGTTTTTGAATGCATAGGCAACCCACCTTCATTTTGTTTGTTTATAGATAGGAGCAGCTCCCCTGCAAACATTGTCATGATATTTTAAATATTATCTTTGACTGAAATAATGGTCTATTTCTTCTTCTATAAAAGTACAAAAAAAAGAATAAAAAATCAAAAGGTCTAATGTACAAATAATTCTTCACCCTCTCTATCAAACTAGAAAGAAAAGAAGAATTGGGTGGTATAAGGTTTGTAAGTTGGTATTCTCCTCATTTCCTTCAATAATTATGTTTACATAGCTAATTATCACCCAATTCCAATAGTAAGTAATGGGTATGAGTTTTTAATATTTTCTTTTTTAGGCGTGTTTAGGGAAATGTCTGATATAATATGGAGGGTTAGAGTTATGATAAACTTA

Coding sequence (CDS)

ATGGGCAAACCAGTCTCCCGGTCGGATGTGAAATCTAAAGCTGAACGCAAATTTGAGAAGAAGGTCCAGTTTTATGAGAACCTAAATTGGCCACCTAGTGCAGGAGTTGGAGAAACTATTACTACCTTGAATGCTCAAAAGAGTATTACTAAGAAGAAAAACCATCGAAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACACTTTCAGAGTTTCTTCCTGGATTGGAGGCGACAAAACAAAAACCTTCTGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAATTCATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTGTTTCAGGCAGACCCATTGAGAGCTGTTCAGCTACATTTAGAGGGCACACAACCAATTGAGGAACCGAAGAAAAAGAAAATGAATAAAAATGGGAGCAAAAAAAGGAAAGAGAAGAAGTCAAAAGCCTCGGCAAAACCTTCATCTATGGAGATGTGA

Protein sequence

MGKPVSRSDVKSKAERKFEKKVQFYENLNWPPSAGVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM

Homology

[Close]

BLAST of CsGy4G018440 vs. NCBI nr
Match: XP_004144346.1 (PREDICTED: putative ribosome biogenesis protein slx9-like [Cucumis sativus] >KGN54744.1 hypothetical protein Csa_4G442590 [Cucumis sativus])

HSP 1 Score: 248.8 bits (634), Expect = 1.3e-62
Identity = 157/166 (94.58%), Postives = 157/166 (94.58%), Query Frame = 0


Query: 1   MGKPVSRSDVKSKAERKFEKKVQFYENLNWPPSAGVGETITTLNAQKSITKKKNHRRRKR 60
           MGKPVSRSDVKSKAERKFEKKVQFYE         VGETITTLNAQKSITKKKNHRRRKR
Sbjct: 1   MGKPVSRSDVKSKAERKFEKKVQFYER--------VGETITTLNAQKSITKKKNHRRRKR 60

Query: 61  DLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADP 120
           DLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADP
Sbjct: 61  DLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADP 120

Query: 121 LRAVQLHLEGTQPIEEPKXXXXXXXXXXXXXXXXXXXXXXPSSMEM 167
           LRAVQLHLEGTQPIEEPKXXXXXXXXXXXXXXXXXXXXXXPSSMEM
Sbjct: 121 LRAVQLHLEGTQPIEEPKXXXXXXXXXXXXXXXXXXXXXXPSSMEM 158

[Close]

BLAST of CsGy4G018440 vs. NCBI nr
Match: XP_016900348.1 (PREDICTED: putative ribosome biogenesis protein slx9-like, partial [Cucumis melo])

HSP 1 Score: 207.6 bits (527), Expect = 3.2e-50
Identity = 116/133 (87.22%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 34  AGVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNC 93
           AGVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNC
Sbjct: 2   AGVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNC 61

Query: 94  KSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIEEPKXXXXXXXXXXXXXXX 153
           KSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIEEPK         XXXXXX
Sbjct: 62  KSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSXXXXXX 121

Query: 154 XXXXXXXPSSMEM 167
           X      PSSMEM
Sbjct: 122 XSKALARPSSMEM 134

[Close]

BLAST of CsGy4G018440 vs. NCBI nr
Match: XP_022146723.1 (putative ribosome biogenesis protein slx9-like isoform X2 [Momordica charantia])

HSP 1 Score: 204.1 bits (518), Expect = 3.6e-49
Identity = 105/137 (76.64%), Postives = 115/137 (83.94%), Query Frame = 0


Query: 1   MGKPVSRSDVKSKAERKFEKKVQFYENLNWPPSAGVGETITTLNAQKSITKKKNHRRRKR 60
           MGKPVSRSD KSKAERKF+KKVQFYE         VGET+T LNAQK+I+K    R RK+
Sbjct: 1   MGKPVSRSDSKSKAERKFQKKVQFYER--------VGETVTALNAQKTISKNSKKRSRKK 60

Query: 61  DLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADP 120
            LKAFDL+TLSEFLPGLEA KQK SAAELK+NCKSRLKFILKERKQMGTVLNHP FQADP
Sbjct: 61  QLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQADP 120

Query: 121 LRAVQLHLEGTQPIEEP 138
           L+A+ LHLE TQP+EEP
Sbjct: 121 LKAIHLHLESTQPVEEP 129

[Close]

BLAST of CsGy4G018440 vs. NCBI nr
Match: XP_008458918.1 (PREDICTED: uncharacterized protein LOC103498180 [Cucumis melo])

HSP 1 Score: 201.4 bits (511), Expect = 2.3e-48
Identity = 102/108 (94.44%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 31  PPSAGVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELK 90
           P   GVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELK
Sbjct: 152 PCGNGVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELK 211

Query: 91  LNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIEEPK 139
           LNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQP EEPK
Sbjct: 212 LNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPTEEPK 259

[Close]

BLAST of CsGy4G018440 vs. NCBI nr
Match: XP_023515417.1 (putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo] >XP_023515418.1 putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.4 bits (503), Expect = 2.0e-47
Identity = 131/166 (78.92%), Postives = 139/166 (83.73%), Query Frame = 0


Query: 1   MGKPVSRSDVKSKAERKFEKKVQFYENLNWPPSAGVGETITTLNAQKSITKKKNHRRRKR 60
           MGKP SRSD KSKAERKFEKK+QFYE         VGETI TLNAQK+ITKKK  RRRKR
Sbjct: 1   MGKPTSRSDSKSKAERKFEKKIQFYER--------VGETIATLNAQKTITKKK-LRRRKR 60

Query: 61  DLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADP 120
           DLKAFDL+ LSEFLPGL+A KQK S  ELK+NCKSRLKF+LKE KQMGTVLNHP FQADP
Sbjct: 61  DLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGTVLNHPAFQADP 120

Query: 121 LRAVQLHLEGTQPIEEPKXXXXXXXXXXXXXXXXXXXXXXPSSMEM 167
           L A+ LHLE TQP+EE  XXXXXXXXXXXXXXXXXXXXX PSSMEM
Sbjct: 121 LGAIHLHLESTQPVEEXXXXXXXXXXXXXXXXXXXXXXXKPSSMEM 157

[Close]

BLAST of CsGy4G018440 vs. TAIR10
Match: AT2G01640.1 (unknown protein)

HSP 1 Score: 112.5 bits (280), Expect = 2.6e-25
Identity = 62/129 (48.06%), Postives = 85/129 (65.89%), Query Frame = 0


Query: 1   MGKPVSRSDVKSKAERKFEKKVQFYENLNWPPSAGVGETITTLNAQKSITKKKNHRRRKR 60
           MGKP   S+V +K+++KFEKK+QFY          V +T+T+L+ QK I KKK  R R++
Sbjct: 1   MGKPSKGSEVTTKSDKKFEKKLQFYTK--------VKDTVTSLSVQKEIGKKKKIRSRQK 60

Query: 61  DLKAFDLSTLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQAD 120
            LKA+DL+ LSEFLP   A  K    A ELK+NCK R K +L E +++  VL+HP FQAD
Sbjct: 61  KLKAYDLTNLSEFLPEFNALQKSALPAPELKMNCKRRQKLVLTEGERLNKVLDHPAFQAD 120

Query: 121 PLRAVQLHL 129
           P+ ++  HL
Sbjct: 121 PVGSIFQHL 121

[Close]

BLAST of CsGy4G018440 vs. TrEMBL
Match: tr|A0A0A0L113|A0A0A0L113_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G442590 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 8.4e-63
Identity = 157/166 (94.58%), Postives = 157/166 (94.58%), Query Frame = 0


Query: 1   MGKPVSRSDVKSKAERKFEKKVQFYENLNWPPSAGVGETITTLNAQKSITKKKNHRRRKR 60
           MGKPVSRSDVKSKAERKFEKKVQFYE         VGETITTLNAQKSITKKKNHRRRKR
Sbjct: 1   MGKPVSRSDVKSKAERKFEKKVQFYER--------VGETITTLNAQKSITKKKNHRRRKR 60

Query: 61  DLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADP 120
           DLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADP
Sbjct: 61  DLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADP 120

Query: 121 LRAVQLHLEGTQPIEEPKXXXXXXXXXXXXXXXXXXXXXXPSSMEM 167
           LRAVQLHLEGTQPIEEPKXXXXXXXXXXXXXXXXXXXXXXPSSMEM
Sbjct: 121 LRAVQLHLEGTQPIEEPKXXXXXXXXXXXXXXXXXXXXXXPSSMEM 158

[Close]

BLAST of CsGy4G018440 vs. TrEMBL
Match: tr|A0A1S4DWK8|A0A1S4DWK8_CUCME (putative ribosome biogenesis protein slx9-like OS=Cucumis melo OX=3656 GN=LOC103491493 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.1e-50
Identity = 116/133 (87.22%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 34  AGVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNC 93
           AGVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNC
Sbjct: 2   AGVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNC 61

Query: 94  KSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIEEPKXXXXXXXXXXXXXXX 153
           KSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIEEPK         XXXXXX
Sbjct: 62  KSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSXXXXXX 121

Query: 154 XXXXXXXPSSMEM 167
           X      PSSMEM
Sbjct: 122 XSKALARPSSMEM 134

[Close]

BLAST of CsGy4G018440 vs. TrEMBL
Match: tr|A0A1S3CA88|A0A1S3CA88_CUCME (uncharacterized protein LOC103498180 OS=Cucumis melo OX=3656 GN=LOC103498180 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.5e-48
Identity = 102/108 (94.44%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 31  PPSAGVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELK 90
           P   GVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELK
Sbjct: 152 PCGNGVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELK 211

Query: 91  LNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIEEPK 139
           LNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQP EEPK
Sbjct: 212 LNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPTEEPK 259

[Close]

BLAST of CsGy4G018440 vs. TrEMBL
Match: tr|A0A2C9V4C4|A0A2C9V4C4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G074300 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.6e-32
Identity = 83/141 (58.87%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 1   MGKPVSRSDVKSKAERKFEKKVQFYENLNWPPSAGVGETITTLNAQKSITKKKNHRRRKR 60
           MGK  SR D  +KA+RKFEKK+QFY          V +T+ +L AQKSITKKK  R R++
Sbjct: 1   MGK--SRQDSVTKADRKFEKKLQFYSK--------VRDTVASLTAQKSITKKKKLRSRQK 60

Query: 61  DLKAFDLSTLSEFLPGLEATKQKPS-AAELKLNCKSRLKFILKERKQMGTVLNHPVFQAD 120
            LKA+DLSTL+EFLP L++ KQ+ + AAE KLNCK+R K ILKE KQ+ TVLNHPVFQ+D
Sbjct: 61  KLKAYDLSTLTEFLPELDSQKQQSTPAAEFKLNCKTRQKLILKEGKQLNTVLNHPVFQSD 120

Query: 121 PLRAVQLHLEGTQPI--EEPK 139
           PL A+  HL+ TQP+  E+PK
Sbjct: 121 PLEAIHQHLQSTQPVMDEKPK 131

[Close]

BLAST of CsGy4G018440 vs. TrEMBL
Match: tr|A0A2P5ERL7|A0A2P5ERL7_9ROSA (Ribosome biogenesis protein OS=Trema orientalis OX=63057 GN=TorRG33x02_161510 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.4e-32
Identity = 81/140 (57.86%), Postives = 100/140 (71.43%), Query Frame = 0


Query: 1   MGKPVSRSDVKSKAERKFEKKVQFYENLNWPPSAGVGETITTLNAQKSITKKKNHRRRKR 60
           MGKP SRS+  +KA+RKFEKK++FY        A V +T+ TL AQK+I KKK  R R R
Sbjct: 1   MGKPSSRSESSTKADRKFEKKLEFY--------AKVRDTVATLTAQKTIAKKKKLRSRHR 60

Query: 61  DLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADP 120
            LKA+DLS+LSEFLP  + + Q+P  AE KLNCKSR K ILKE KQ+ TVL HP FQ+DP
Sbjct: 61  KLKAYDLSSLSEFLPEFKKS-QQPPPAEFKLNCKSRQKLILKEAKQLSTVLKHPSFQSDP 120

Query: 121 LRAVQLHLEGTQPI--EEPK 139
           L ++  HLE TQP+  E+PK
Sbjct: 121 LASIHQHLESTQPVIDEKPK 131

The following BLAST results are available for this feature:

BLAST of CsGy4G018440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144346.1	1.3e-62	94.58	PREDICTED: putative ribosome biogenesis protein slx9-like [Cucumis sativus] >KGN...	[more]
XP_016900348.1	3.2e-50	87.22	PREDICTED: putative ribosome biogenesis protein slx9-like, partial [Cucumis melo...	[more]
XP_022146723.1	3.6e-49	76.64	putative ribosome biogenesis protein slx9-like isoform X2 [Momordica charantia]	[more]
XP_008458918.1	2.3e-48	94.44	PREDICTED: uncharacterized protein LOC103498180 [Cucumis melo]	[more]
XP_023515417.1	2.0e-47	78.92	putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo] >XP_...	[more]

BLAST of CsGy4G018440 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01640.1	2.6e-25	48.06	unknown protein	[more]

BLAST of CsGy4G018440 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G018440 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L113\|A0A0A0L113_CUCSA	8.4e-63	94.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G442590 PE=4 SV=1	[more]
tr\|A0A1S4DWK8\|A0A1S4DWK8_CUCME	2.1e-50	87.22	putative ribosome biogenesis protein slx9-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A1S3CA88\|A0A1S3CA88_CUCME	1.5e-48	94.44	uncharacterized protein LOC103498180 OS=Cucumis melo OX=3656 GN=LOC103498180 PE=...	[more]
tr\|A0A2C9V4C4\|A0A2C9V4C4_MANES	2.6e-32	58.87	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G074300 PE=4 SV=...	[more]
tr\|A0A2P5ERL7\|A0A2P5ERL7_9ROSA	3.4e-32	57.86	Ribosome biogenesis protein OS=Trema orientalis OX=63057 GN=TorRG33x02_161510 PE...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G018440.1	CsGy4G018440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF15341	SLX9	coord: 11..131 e-value: 5.9E-8 score: 33.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..166
None	No IPR available	PANTHER	PTHR31109	FAMILY NOT NAMED	coord: 8..165

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G018440	Csa4G442590	Cucumber (Chinese Long) v2	cgybcuB167
CsGy4G018440	MELO3C003274	Melon (DHL92) v3.5.1	cgybmeB281
CsGy4G018440	CSPI04G19590	Wild cucumber (PI 183967)	cgybcpiB170
CsGy4G018440	MELO3C003274.2	Melon (DHL92) v3.6.1	cgybmedB282
CsGy4G018440	CsaV3_4G029930	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G018440	Cla97C04G070220	Watermelon (97103) v2	cgybwmbB283

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G018440	Cucurbita maxima (Rimu)	cgybcmaB534
CsGy4G018440	Cucurbita maxima (Rimu)	cgybcmaB530
CsGy4G018440	Cucurbita maxima (Rimu)	cgybcmaB570
CsGy4G018440	Cucurbita moschata (Rifu)	cgybcmoB511
CsGy4G018440	Cucurbita moschata (Rifu)	cgybcmoB544
CsGy4G018440	Cucurbita pepo (Zucchini)	cgybcpeB465
CsGy4G018440	Cucurbita pepo (Zucchini)	cgybcpeB466
CsGy4G018440	Cucurbita pepo (Zucchini)	cgybcpeB525
CsGy4G018440	Bottle gourd (USVL1VR-Ls)	cgyblsiB238
CsGy4G018440	Watermelon (Charleston Gray)	cgybwcgB283
CsGy4G018440	Silver-seed gourd	carcgybB0482
CsGy4G018440	Silver-seed gourd	carcgybB0521
CsGy4G018440	Watermelon (97103) v2	cgybwmbB288
CsGy4G018440	Wax gourd	cgybwgoB375