Csa4G439070 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G439070
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 16675129 .. 16675494 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAACCGTGTGGAAGTTCACATCTGAGTCCGCTGGAGCGTAGACTCGCCAGAAGAGAGGAAGAAGAAGCCACACAGGCTACCATTCAAGGCAAACGCTGGAATTCGCCGGAAATTGAAGTTACCGATGCTCGTGAGTGCGGATACTGTCGTAACGCCGTCGAAGAAGACACGAACCTCTTTCGTGCGTGGGTTACGCGGGCGATGGTGGAGCAGCGGCATCCAGTTCATCGAAGGGCTCGCACCGCTGCCGAAACTGTTCCGCTTGGGTGTCGAATTGTAATTCGAACCTAAAACGGGCCAAAACATCACTGTGGCATTTTTGTAATTTCTCAAAAGTCCGGCATCGAAAAAGAAAAACTG

mRNA sequence

ATGTTGAAACCGTGTGGAAGTTCACATCTGAGTCCGCTGGAGCGTAGACTCGCCAGAAGAGAGGAAGAAGAAGCCACACAGGCTACCATTCAAGGCAAACGCTGGAATTCGCCGGAAATTGAAGTTACCGATGCTCGTGAGTGCGGATACTGTCGTAACGCCGTCGAAGAAGACACGAACCTCTTTCGTGCGTGGGTTACGCGGGCGATGGTGGAGCAGCGGCATCCAGTTCATCGAAGGGCTCGCACCGCTGCCGAAACTGTTCCGCTTGGGTGTCGAATTGTAATTCGAACCTAA

Coding sequence (CDS)

ATGTTGAAACCGTGTGGAAGTTCACATCTGAGTCCGCTGGAGCGTAGACTCGCCAGAAGAGAGGAAGAAGAAGCCACACAGGCTACCATTCAAGGCAAACGCTGGAATTCGCCGGAAATTGAAGTTACCGATGCTCGTGAGTGCGGATACTGTCGTAACGCCGTCGAAGAAGACACGAACCTCTTTCGTGCGTGGGTTACGCGGGCGATGGTGGAGCAGCGGCATCCAGTTCATCGAAGGGCTCGCACCGCTGCCGAAACTGTTCCGCTTGGGTGTCGAATTGTAATTCGAACCTAA

Protein sequence

MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTNLFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT*
Homology
[Close]
BLAST of Csa4G439070 vs. TrEMBL
Match: A0A0A0KYI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G439070 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 7.7e-50
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN 60
          MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN
Sbjct: 1  MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN 60

Query: 61 LFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT 99
          LFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT
Sbjct: 61 LFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT 98

[Close]
BLAST of Csa4G439070 vs. NCBI nr
Match: gi|700199582|gb|KGN54740.1| (hypothetical protein Csa_4G439070 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN 60
          MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN
Sbjct: 1  MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN 60

Query: 61 LFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT 99
          LFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT
Sbjct: 61 LFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT 98

The following BLAST results are available for this feature:
BLAST of Csa4G439070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYI6_CUCSA7.7e-50100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G439070 PE=4 SV=1[more]
BLAST of Csa4G439070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199582|gb|KGN54740.1|1.1e-49100.00hypothetical protein Csa_4G439070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU118598cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G439070.1Csa4G439070.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU118598CU118598transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G439070CSPI04G19520Wild cucumber (PI 183967)cpicuB181
Csa4G439070CsGy4G018410Cucumber (Gy14) v2cgybcuB167
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G439070Watermelon (97103) v2cuwmbB303
Csa4G439070Wax gourdcuwgoB398
Csa4G439070Cucumber (Gy14) v1cgycuB259
Csa4G439070Cucurbita maxima (Rimu)cmacuB665
Csa4G439070Cucurbita maxima (Rimu)cmacuB669
Csa4G439070Cucurbita maxima (Rimu)cmacuB870
Csa4G439070Cucurbita moschata (Rifu)cmocuB660
Csa4G439070Cucurbita moschata (Rifu)cmocuB859
Csa4G439070Melon (DHL92) v3.5.1cumeB328
Csa4G439070Watermelon (Charleston Gray)cuwcgB306
Csa4G439070Cucurbita pepo (Zucchini)cpecuB073
Csa4G439070Cucurbita pepo (Zucchini)cpecuB492
Csa4G439070Bottle gourd (USVL1VR-Ls)culsiB251
Csa4G439070Melon (DHL92) v3.6.1cumedB314
Csa4G439070Silver-seed gourdcarcuB0505
Csa4G439070Silver-seed gourdcarcuB0545