Csa4G439070.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa4G439070.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 16675129 .. 16675494 (+)
Sequence length297
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAACCGTGTGGAAGTTCACATCTGAGTCCGCTGGAGCGTAGACTCGCCAGAAGAGAGGAAGAAGAAGCCACACAGGCTACCATTCAAGGCAAACGCTGGAATTCGCCGGAAATTGAAGTTACCGATGCTCGTGAGTGCGGATACTGTCGTAACGCCGTCGAAGAAGACACGAACCTCTTTCGTGCGTGGGTTACGCGGGCGATGGTGGAGCAGCGGCATCCAGTTCATCGAAGGGCTCGCACCGCTGCCGAAACTGTTCCGCTTGGGTGTCGAATTGTAATTCGAACCTAAAACGGGCCAAAACATCACTGTGGCATTTTTGTAATTTCTCAAAAGTCCGGCATCGAAAAAGAAAAACTG

mRNA sequence

ATGTTGAAACCGTGTGGAAGTTCACATCTGAGTCCGCTGGAGCGTAGACTCGCCAGAAGAGAGGAAGAAGAAGCCACACAGGCTACCATTCAAGGCAAACGCTGGAATTCGCCGGAAATTGAAGTTACCGATGCTCGTGAGTGCGGATACTGTCGTAACGCCGTCGAAGAAGACACGAACCTCTTTCGTGCGTGGGTTACGCGGGCGATGGTGGAGCAGCGGCATCCAGTTCATCGAAGGGCTCGCACCGCTGCCGAAACTGTTCCGCTTGGGTGTCGAATTGTAATTCGAACCTAA

Coding sequence (CDS)

ATGTTGAAACCGTGTGGAAGTTCACATCTGAGTCCGCTGGAGCGTAGACTCGCCAGAAGAGAGGAAGAAGAAGCCACACAGGCTACCATTCAAGGCAAACGCTGGAATTCGCCGGAAATTGAAGTTACCGATGCTCGTGAGTGCGGATACTGTCGTAACGCCGTCGAAGAAGACACGAACCTCTTTCGTGCGTGGGTTACGCGGGCGATGGTGGAGCAGCGGCATCCAGTTCATCGAAGGGCTCGCACCGCTGCCGAAACTGTTCCGCTTGGGTGTCGAATTGTAATTCGAACCTAA

Protein sequence

MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTNLFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT*
Homology
[Close]
BLAST of Csa4G439070.1 vs. TrEMBL
Match: A0A0A0KYI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G439070 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 7.7e-50
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN 60
          MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN
Sbjct: 1  MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN 60

Query: 61 LFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT 99
          LFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT
Sbjct: 61 LFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT 98

[Close]
BLAST of Csa4G439070.1 vs. NCBI nr
Match: gi|700199582|gb|KGN54740.1| (hypothetical protein Csa_4G439070 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN 60
          MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN
Sbjct: 1  MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN 60

Query: 61 LFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT 99
          LFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT
Sbjct: 61 LFRAWVTRAMVEQRHPVHRRARTAAETVPLGCRIVIRT 98

The following BLAST results are available for this feature:
BLAST of Csa4G439070.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYI6_CUCSA7.7e-50100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G439070 PE=4 SV=1[more]
BLAST of Csa4G439070.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199582|gb|KGN54740.1|1.1e-49100.00hypothetical protein Csa_4G439070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa4G439070Csa4G439070gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa4G439070.1Csa4G439070.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G439070.1.cds1Csa4G439070.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G439070.1.utr3p1Csa4G439070.1.utr3p1three_prime_UTR