Csa4G293140 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G293140
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 11602293 .. 11603001 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCACTACAAATATGGTTCTCTTTTTTCTCCTTTCCAAGTTTATATATAACAGGTAATCTAAGAGCATACCCATTGTCATAGTGTGGCCTTGTCAGAGCTTTGAATGTCAGATATGATTTACAATGGCTCCGACTCCATTGGGCTGCTCATGCTAAATGCAAACGGCTATGACATACCGGAGTTCGGTTTCATGAGCCAACACCAGTCTGATGGAGACCCAATTGGAGACAACCCTGAGAGTGAACAGGCTTACCACAGTTGTTATGGATGGTCGTCGAATGAAGTCAACCCCACCGATCTCTTCTTCAATTGCGAATACCTTTATGGCAATCAAAATGGTTGCATAAACGAGAGTACAACAGAACTCATTCTTTACCAGAATGAGAATCAACTTGAGGATTATAATGGTGATTCTAGAAACTTGTACTATGAATTTTCTTGGGATTGCCTTCGGTTTTGGTTTGGAATTGGGGAAGATGAGCAAGGTCAGGAACGTAATGGGCAAGAATTGACACCTGAAAATGACTGCAGATCAGATGCTTTGGCACTCCTAGAAGCCATCCTTGGGTATTGACACTGCCATATCATTTTTTACTTTTCATCAAGAATGCAATGTAATCAGAGTTCTTTATTTCTTTTCAAATGTTCTTTTACCAGAAATAATAACAAGTTTTCCCGATTTTATTATATCAAAGTATACAAAATCCA

mRNA sequence

ATGTCAGATATGATTTACAATGGCTCCGACTCCATTGGGCTGCTCATGCTAAATGCAAACGGCTATGACATACCGGAGTTCGGTTTCATGAGCCAACACCAGTCTGATGGAGACCCAATTGGAGACAACCCTGAGAGTGAACAGGCTTACCACAGTTGTTATGGATGGTCGTCGAATGAAGTCAACCCCACCGATCTCTTCTTCAATTGCGAATACCTTTATGGCAATCAAAATGGTTGCATAAACGAGAGTACAACAGAACTCATTCTTTACCAGAATGAGAATCAACTTGAGGATTATAATGGTGATTCTAGAAACTTGTACTATGAATTTTCTTGGGATTGCCTTCGGTTTTGGTTTGGAATTGGGGAAGATGAGCAAGGTCAGGAACGTAATGGGCAAGAATTGACACCTGAAAATGACTGCAGATCAGATGCTTTGGCACTCCTAGAAGCCATCCTTGGGTATTGA

Coding sequence (CDS)

ATGTCAGATATGATTTACAATGGCTCCGACTCCATTGGGCTGCTCATGCTAAATGCAAACGGCTATGACATACCGGAGTTCGGTTTCATGAGCCAACACCAGTCTGATGGAGACCCAATTGGAGACAACCCTGAGAGTGAACAGGCTTACCACAGTTGTTATGGATGGTCGTCGAATGAAGTCAACCCCACCGATCTCTTCTTCAATTGCGAATACCTTTATGGCAATCAAAATGGTTGCATAAACGAGAGTACAACAGAACTCATTCTTTACCAGAATGAGAATCAACTTGAGGATTATAATGGTGATTCTAGAAACTTGTACTATGAATTTTCTTGGGATTGCCTTCGGTTTTGGTTTGGAATTGGGGAAGATGAGCAAGGTCAGGAACGTAATGGGCAAGAATTGACACCTGAAAATGACTGCAGATCAGATGCTTTGGCACTCCTAGAAGCCATCCTTGGGTATTGA

Protein sequence

MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSSNEVNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWFGIGEDEQGQERNGQELTPENDCRSDALALLEAILGY*
Homology
[Close]
BLAST of Csa4G293140 vs. TrEMBL
Match: A0A0A0KZF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G293140 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 7.0e-90
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 

Query: 1   MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSSNE 60
           MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSSNE
Sbjct: 1   MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSSNE 60

Query: 61  VNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF 120
           VNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF
Sbjct: 61  VNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF 120

Query: 121 GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 157
           GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY
Sbjct: 121 GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 156

[Close]
BLAST of Csa4G293140 vs. NCBI nr
Match: gi|700199046|gb|KGN54204.1| (hypothetical protein Csa_4G293140 [Cucumis sativus])

HSP 1 Score: 337.8 bits (865), Expect = 1.0e-89
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 

Query: 1   MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSSNE 60
           MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSSNE
Sbjct: 1   MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSSNE 60

Query: 61  VNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF 120
           VNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF
Sbjct: 61  VNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF 120

Query: 121 GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 157
           GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY
Sbjct: 121 GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 156

The following BLAST results are available for this feature:
BLAST of Csa4G293140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZF2_CUCSA7.0e-90100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G293140 PE=4 SV=1[more]
BLAST of Csa4G293140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199046|gb|KGN54204.1|1.0e-89100.00hypothetical protein Csa_4G293140 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU112054cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G293140.1Csa4G293140.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU112054CU112054transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G293140Cla018252Watermelon (97103) v1cuwmB338
Csa4G293140MELO3C003084Melon (DHL92) v3.5.1cumeB323
Csa4G293140ClCG04G008640Watermelon (Charleston Gray)cuwcgB301
Csa4G293140Lsi01G013830Bottle gourd (USVL1VR-Ls)culsiB248
Csa4G293140MELO3C003084.2Melon (DHL92) v3.6.1cumedB310
Csa4G293140Cla97C04G075310Watermelon (97103) v2cuwmbB298
Csa4G293140Bhi03G001264Wax gourdcuwgoB407
Csa4G293140CSPI04G14160Wild cucumber (PI 183967)cpicuB181
Csa4G293140CsGy4G013720Cucumber (Gy14) v2cgybcuB167
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G293140Cucurbita maxima (Rimu)cmacuB264
Csa4G293140Cucurbita maxima (Rimu)cmacuB668
Csa4G293140Cucurbita maxima (Rimu)cmacuB719
Csa4G293140Cucurbita maxima (Rimu)cmacuB837
Csa4G293140Cucurbita maxima (Rimu)cmacuB859
Csa4G293140Cucurbita moschata (Rifu)cmocuB249
Csa4G293140Cucurbita moschata (Rifu)cmocuB657
Csa4G293140Cucurbita moschata (Rifu)cmocuB711
Csa4G293140Cucurbita moschata (Rifu)cmocuB825
Csa4G293140Cucurbita moschata (Rifu)cmocuB847
Csa4G293140Melon (DHL92) v3.5.1cumeB294
Csa4G293140Watermelon (Charleston Gray)cuwcgB274
Csa4G293140Watermelon (97103) v1cuwmB292
Csa4G293140Cucurbita pepo (Zucchini)cpecuB070
Csa4G293140Cucurbita pepo (Zucchini)cpecuB414
Csa4G293140Cucurbita pepo (Zucchini)cpecuB496
Csa4G293140Cucurbita pepo (Zucchini)cpecuB619
Csa4G293140Cucurbita pepo (Zucchini)cpecuB871
Csa4G293140Bottle gourd (USVL1VR-Ls)culsiB278
Csa4G293140Cucumber (Gy14) v2cgybcuB123
Csa4G293140Cucumber (Gy14) v2cgybcuB221
Csa4G293140Cucumber (Gy14) v2cgybcuB271
Csa4G293140Melon (DHL92) v3.6.1cumedB261
Csa4G293140Melon (DHL92) v3.6.1cumedB278
Csa4G293140Silver-seed gourdcarcuB0178
Csa4G293140Silver-seed gourdcarcuB0503
Csa4G293140Silver-seed gourdcarcuB0947
Csa4G293140Silver-seed gourdcarcuB1013
Csa4G293140Watermelon (97103) v2cuwmbB274
Csa4G293140Wax gourdcuwgoB357
Csa4G293140Cucumber (Chinese Long) v2cucuB092
Csa4G293140Cucumber (Chinese Long) v2cucuB137
Csa4G293140Cucumber (Chinese Long) v2cucuB138
Csa4G293140Cucumber (Chinese Long) v2cucuB145
Csa4G293140Cucumber (Gy14) v1cgycuB055
Csa4G293140Cucumber (Gy14) v1cgycuB250
Csa4G293140Cucumber (Gy14) v1cgycuB437