CSPI04G14160 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G14160
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 11979166 .. 11979866 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATATGGTTCTCTTTTTTCTCCTTTCCAAGTTTATATATAACAGGTAATCTAAGAGCATACCCATTGTCATAGTGTGGCCTTGTCAGAGCTTTGAATGTCAGATATGATTTACAATGGCTCCGACTCCATTGGGCTGCTCATGCTAAATGCAAACGGCTATGACATACCGGAGTTCGGTTTCATGAGCCAACACCAGTCTGATGGAGACCCAATTGGAGACAACCCTGAGAGTGAACAGACTTACCACAGTTGTTATGGATGGTCGTCGAATGAAGTCGACCCCACCGATCTCTTCTTCAATTGCGAATACCTTTATGGCAATCAAAATGGTTGCATAAACGAGAGTACAACAGAACTCATTCTTTACCAGAATGAGAATCAACTTGAGGATTATAATGGTGATTCTAGAAACTTGTACTATGAATTTTCTTGGGATTGCCTTCGGTTTTGGTTTGGAATTGGGGAAGATGAGCAAGGTCAGGAACGTAATGGGCAAGAATTGACACCTGAAAATGACTGCAGATCAGATGCTTTGGCACTCCTAGAAGCCATCCTTGGGTATTGACACTGCCATATCATTTTTTACTTTTCATCAAGAATGCAATGTAATCAGAGTTCTTTATTTCTTTTCAAATGTTCTTTTACCAGAAATAATAACAAGTTTTCCCGATTTTATTATATCAAAGTATACAAAATCCAG

mRNA sequence

ATGTCAGATATGATTTACAATGGCTCCGACTCCATTGGGCTGCTCATGCTAAATGCAAACGGCTATGACATACCGGAGTTCGGTTTCATGAGCCAACACCAGTCTGATGGAGACCCAATTGGAGACAACCCTGAGAGTGAACAGACTTACCACAGTTGTTATGGATGGTCGTCGAATGAAGTCGACCCCACCGATCTCTTCTTCAATTGCGAATACCTTTATGGCAATCAAAATGGTTGCATAAACGAGAGTACAACAGAACTCATTCTTTACCAGAATGAGAATCAACTTGAGGATTATAATGGTGATTCTAGAAACTTGTACTATGAATTTTCTTGGGATTGCCTTCGGTTTTGGTTTGGAATTGGGGAAGATGAGCAAGGTCAGGAACGTAATGGGCAAGAATTGACACCTGAAAATGACTGCAGATCAGATGCTTTGGCACTCCTAGAAGCCATCCTTGGGTATTGA

Coding sequence (CDS)

ATGTCAGATATGATTTACAATGGCTCCGACTCCATTGGGCTGCTCATGCTAAATGCAAACGGCTATGACATACCGGAGTTCGGTTTCATGAGCCAACACCAGTCTGATGGAGACCCAATTGGAGACAACCCTGAGAGTGAACAGACTTACCACAGTTGTTATGGATGGTCGTCGAATGAAGTCGACCCCACCGATCTCTTCTTCAATTGCGAATACCTTTATGGCAATCAAAATGGTTGCATAAACGAGAGTACAACAGAACTCATTCTTTACCAGAATGAGAATCAACTTGAGGATTATAATGGTGATTCTAGAAACTTGTACTATGAATTTTCTTGGGATTGCCTTCGGTTTTGGTTTGGAATTGGGGAAGATGAGCAAGGTCAGGAACGTAATGGGCAAGAATTGACACCTGAAAATGACTGCAGATCAGATGCTTTGGCACTCCTAGAAGCCATCCTTGGGTATTGA
Homology
[Close]
BLAST of CSPI04G14160 vs. TrEMBL
Match: A0A0A0KZF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G293140 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 3.0e-88
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 1 

Query: 1   MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQTYHSCYGWSSNE 60
           MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQ YHSCYGWSSNE
Sbjct: 1   MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSSNE 60

Query: 61  VDPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF 120
           V+PTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF
Sbjct: 61  VNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF 120

Query: 121 GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 157
           GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY
Sbjct: 121 GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 156

[Close]
BLAST of CSPI04G14160 vs. NCBI nr
Match: gi|700199046|gb|KGN54204.1| (hypothetical protein Csa_4G293140 [Cucumis sativus])

HSP 1 Score: 332.4 bits (851), Expect = 4.2e-88
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 1 

Query: 1   MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQTYHSCYGWSSNE 60
           MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQ YHSCYGWSSNE
Sbjct: 1   MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSSNE 60

Query: 61  VDPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF 120
           V+PTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF
Sbjct: 61  VNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF 120

Query: 121 GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 157
           GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY
Sbjct: 121 GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 156

The following BLAST results are available for this feature:
BLAST of CSPI04G14160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G14160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZF2_CUCSA3.0e-8898.72Uncharacterized protein OS=Cucumis sativus GN=Csa_4G293140 PE=4 SV=1[more]
BLAST of CSPI04G14160 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G14160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199046|gb|KGN54204.1|4.2e-8898.72hypothetical protein Csa_4G293140 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G14160.1CSPI04G14160.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G14160Cla018252Watermelon (97103) v1cpiwmB345
CSPI04G14160Csa4G293140Cucumber (Chinese Long) v2cpicuB181
CSPI04G14160MELO3C003084Melon (DHL92) v3.5.1cpimeB322
CSPI04G14160ClCG04G008640Watermelon (Charleston Gray)cpiwcgB316
CSPI04G14160Lsi01G013830Bottle gourd (USVL1VR-Ls)cpilsiB247
CSPI04G14160MELO3C003084.2Melon (DHL92) v3.6.1cpimedB313
CSPI04G14160CsaV3_4G024520Cucumber (Chinese Long) v3cpicucB212
CSPI04G14160Cla97C04G075310Watermelon (97103) v2cpiwmbB307
CSPI04G14160Bhi03G001264Wax gourdcpiwgoB410
CSPI04G14160CsGy4G013720Cucumber (Gy14) v2cgybcpiB170
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G14160Watermelon (97103) v2cpiwmbB280
CSPI04G14160Watermelon (97103) v2cpiwmbB295
CSPI04G14160Wax gourdcpiwgoB359
CSPI04G14160Wild cucumber (PI 183967)cpicpiB107
CSPI04G14160Wild cucumber (PI 183967)cpicpiB153
CSPI04G14160Wild cucumber (PI 183967)cpicpiB162
CSPI04G14160Cucumber (Gy14) v1cgycpiB055
CSPI04G14160Cucumber (Gy14) v1cgycpiB257
CSPI04G14160Cucumber (Gy14) v1cgycpiB460
CSPI04G14160Cucurbita maxima (Rimu)cmacpiB266
CSPI04G14160Cucurbita maxima (Rimu)cmacpiB677
CSPI04G14160Cucurbita maxima (Rimu)cmacpiB726
CSPI04G14160Cucurbita maxima (Rimu)cmacpiB852
CSPI04G14160Cucurbita maxima (Rimu)cmacpiB876
CSPI04G14160Cucurbita moschata (Rifu)cmocpiB254
CSPI04G14160Cucurbita moschata (Rifu)cmocpiB669
CSPI04G14160Cucurbita moschata (Rifu)cmocpiB721
CSPI04G14160Cucurbita moschata (Rifu)cmocpiB834
CSPI04G14160Cucurbita moschata (Rifu)cmocpiB856
CSPI04G14160Cucumber (Chinese Long) v2cpicuB178
CSPI04G14160Cucumber (Chinese Long) v2cpicuB191
CSPI04G14160Cucumber (Chinese Long) v2cpicuB200
CSPI04G14160Melon (DHL92) v3.5.1cpimeB264
CSPI04G14160Melon (DHL92) v3.5.1cpimeB288
CSPI04G14160Watermelon (Charleston Gray)cpiwcgB282
CSPI04G14160Watermelon (Charleston Gray)cpiwcgB304
CSPI04G14160Watermelon (Charleston Gray)cpiwcgB305
CSPI04G14160Watermelon (97103) v1cpiwmB292
CSPI04G14160Watermelon (97103) v1cpiwmB354
CSPI04G14160Watermelon (97103) v1cpiwmB355
CSPI04G14160Cucurbita pepo (Zucchini)cpecpiB065
CSPI04G14160Cucurbita pepo (Zucchini)cpecpiB413
CSPI04G14160Cucurbita pepo (Zucchini)cpecpiB497
CSPI04G14160Cucurbita pepo (Zucchini)cpecpiB621
CSPI04G14160Cucurbita pepo (Zucchini)cpecpiB873
CSPI04G14160Bottle gourd (USVL1VR-Ls)cpilsiB246
CSPI04G14160Bottle gourd (USVL1VR-Ls)cpilsiB276
CSPI04G14160Melon (DHL92) v3.6.1cpimedB260
CSPI04G14160Melon (DHL92) v3.6.1cpimedB282
CSPI04G14160Cucumber (Gy14) v2cgybcpiB124
CSPI04G14160Cucumber (Gy14) v2cgybcpiB220
CSPI04G14160Cucumber (Gy14) v2cgybcpiB278
CSPI04G14160Silver-seed gourdcarcpiB0184
CSPI04G14160Silver-seed gourdcarcpiB0511
CSPI04G14160Silver-seed gourdcarcpiB0970
CSPI04G14160Silver-seed gourdcarcpiB1037
CSPI04G14160Cucumber (Chinese Long) v3cpicucB209
CSPI04G14160Cucumber (Chinese Long) v3cpicucB232
CSPI04G14160Cucumber (Chinese Long) v3cpicucB241